; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS024341 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS024341
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRibonuclease T(2)
Genome locationscaffold318:199983..200387
RNA-Seq ExpressionMS024341
SyntenyMS024341
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0016020 - membrane (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0033897 - ribonuclease T2 activity (molecular function)
InterPro domainsIPR001568 - Ribonuclease T2-like
IPR036430 - Ribonuclease T2-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN45018.2 hypothetical protein Csa_016393 [Cucumis sativus]1.1e-4465.67Show/hide
Query:  MGEYWQDLVSGDNTTAWQTKWAIHGTCLAAVFDEFKYFCLGLDTYGRHAVVSFLVHGGLVSSSAQLHDKTGFIKAIADVTSKKGGVICGADQRGRTQLQK
        M +YW+DL +G++  AW +KW +HGTC AA FD+FKYFCLGLDTYGRHA+ SFL   GL  SS++   K  FI AIA+ T KKGGVIC  DQ  R QLQK
Subjt:  MGEYWQDLVSGDNTTAWQTKWAIHGTCLAAVFDEFKYFCLGLDTYGRHAVVSFLVHGGLVSSSAQLHDKTGFIKAIADVTSKKGGVICGADQRGRTQLQK

Query:  VVLCYSKDGATMIDCLDNVSSSCPDKFFWLALGD
         VLCY KDG T+IDC DNVSSSCPD F WLALGD
Subjt:  VVLCYSKDGATMIDCLDNVSSSCPDKFFWLALGD

XP_004149779.2 ribonuclease MC [Cucumis sativus]1.1e-4465.67Show/hide
Query:  MGEYWQDLVSGDNTTAWQTKWAIHGTCLAAVFDEFKYFCLGLDTYGRHAVVSFLVHGGLVSSSAQLHDKTGFIKAIADVTSKKGGVICGADQRGRTQLQK
        M +YW+DL +G++  AW +KW +HGTC AA FD+FKYFCLGLDTYGRHA+ SFL   GL  SS++   K  FI AIA+ T KKGGVIC  DQ  R QLQK
Subjt:  MGEYWQDLVSGDNTTAWQTKWAIHGTCLAAVFDEFKYFCLGLDTYGRHAVVSFLVHGGLVSSSAQLHDKTGFIKAIADVTSKKGGVICGADQRGRTQLQK

Query:  VVLCYSKDGATMIDCLDNVSSSCPDKFFWLALGD
         VLCY KDG T+IDC DNVSSSCPD F WLALGD
Subjt:  VVLCYSKDGATMIDCLDNVSSSCPDKFFWLALGD

XP_022143591.1 ribonuclease 1-like [Momordica charantia]8.6e-6689.55Show/hide
Query:  MGEYWQDLVSGDNTTAWQTKWAIHGTCLAAVFDEFKYFCLGLDTYGRHAVVSFLVHGGLVSSSAQLHDKTGFIKAIADVTSKKGGVICGADQRGRTQLQK
        MGEYWQDLVSGDNT AWQTKWAIHGTC A VFDEFKYFC+GLDTYGRHA++SFLVHGGLV SSAQLH KT FIKAIADVTSKKGGVIC ADQRGRTQL+ 
Subjt:  MGEYWQDLVSGDNTTAWQTKWAIHGTCLAAVFDEFKYFCLGLDTYGRHAVVSFLVHGGLVSSSAQLHDKTGFIKAIADVTSKKGGVICGADQRGRTQLQK

Query:  VVLCYSKDGATMIDCLDNVSSSCPDKFFWLALGD
        VVLCYSKDGATMIDC DNVSSSCPDKF WLALGD
Subjt:  VVLCYSKDGATMIDCLDNVSSSCPDKFFWLALGD

XP_022934593.1 ribonuclease MC-like [Cucurbita moschata]1.2e-1432.33Show/hide
Query:  MGEYWQDLVSGDNTTAWQTKWAIHGTCLAAVFDEFKYFCLGLDTYGRHA--VVSFLVHGGLVSSSAQLHDKTGFIKAIADVTSKKGGVIC--GADQRGRT
        +  YW D++ G N   WQ +W  HG C    F++ +YF + L+    H+  +++ L   GL  S   + +      AI   T KK G+ C   A  + + 
Subjt:  MGEYWQDLVSGDNTTAWQTKWAIHGTCLAAVFDEFKYFCLGLDTYGRHA--VVSFLVHGGLVSSSAQLHDKTGFIKAIADVTSKKGGVIC--GADQRGRT

Query:  QLQKVVLCYSKDGATMIDCLDNVSSSCPDKFFW
        QL +++LC+ KDG T+IDC +    +CP +F W
Subjt:  QLQKVVLCYSKDGATMIDCLDNVSSSCPDKFFW

XP_038899255.1 ribonuclease MC-like [Benincasa hispida]3.6e-5676.87Show/hide
Query:  MGEYWQDLVSGDNTTAWQTKWAIHGTCLAAVFDEFKYFCLGLDTYGRHAVVSFLVHGGLVSSSAQLHDKTGFIKAIADVTSKKGGVICGADQRGRTQLQK
        M +YWQDL +G+   AW +KWAIHGTC A VFDEFKYFCLGLDTYGRHA++SFLVHGGLV SS++  DKT F+KAIAD+TSKKGGVIC  DQRGRTQLQK
Subjt:  MGEYWQDLVSGDNTTAWQTKWAIHGTCLAAVFDEFKYFCLGLDTYGRHAVVSFLVHGGLVSSSAQLHDKTGFIKAIADVTSKKGGVICGADQRGRTQLQK

Query:  VVLCYSKDGATMIDCLDNVSSSCPDKFFWLALGD
         VLCY+KDG T+IDC DNVSSSCPD F WLALGD
Subjt:  VVLCYSKDGATMIDCLDNVSSSCPDKFFWLALGD

TrEMBL top hitse value%identityAlignment
A0A0A0K4L1 Uncharacterized protein5.3e-4565.67Show/hide
Query:  MGEYWQDLVSGDNTTAWQTKWAIHGTCLAAVFDEFKYFCLGLDTYGRHAVVSFLVHGGLVSSSAQLHDKTGFIKAIADVTSKKGGVICGADQRGRTQLQK
        M +YW+DL +G++  AW +KW +HGTC AA FD+FKYFCLGLDTYGRHA+ SFL   GL  SS++   K  FI AIA+ T KKGGVIC  DQ  R QLQK
Subjt:  MGEYWQDLVSGDNTTAWQTKWAIHGTCLAAVFDEFKYFCLGLDTYGRHAVVSFLVHGGLVSSSAQLHDKTGFIKAIADVTSKKGGVICGADQRGRTQLQK

Query:  VVLCYSKDGATMIDCLDNVSSSCPDKFFWLALGD
         VLCY KDG T+IDC DNVSSSCPD F WLALGD
Subjt:  VVLCYSKDGATMIDCLDNVSSSCPDKFFWLALGD

A0A6J1CQQ9 ribonuclease 1-like4.2e-6689.55Show/hide
Query:  MGEYWQDLVSGDNTTAWQTKWAIHGTCLAAVFDEFKYFCLGLDTYGRHAVVSFLVHGGLVSSSAQLHDKTGFIKAIADVTSKKGGVICGADQRGRTQLQK
        MGEYWQDLVSGDNT AWQTKWAIHGTC A VFDEFKYFC+GLDTYGRHA++SFLVHGGLV SSAQLH KT FIKAIADVTSKKGGVIC ADQRGRTQL+ 
Subjt:  MGEYWQDLVSGDNTTAWQTKWAIHGTCLAAVFDEFKYFCLGLDTYGRHAVVSFLVHGGLVSSSAQLHDKTGFIKAIADVTSKKGGVICGADQRGRTQLQK

Query:  VVLCYSKDGATMIDCLDNVSSSCPDKFFWLALGD
        VVLCYSKDGATMIDC DNVSSSCPDKF WLALGD
Subjt:  VVLCYSKDGATMIDCLDNVSSSCPDKFFWLALGD

A0A6J1EXD5 Ribonuclease T(2)1.3e-1432.33Show/hide
Query:  MGEYWQDLVSGDNTTAWQTKWAIHGTCLAAVFDEFKYF--CLGLDTYGRHAVVSFLVHGGLVSSSAQLHDKTGFIKAIADVTSKKGGVICGAD-QRGRTQ
        +  YW D++SG+N   W+ +W  HGTC    F++ +YF   L + T   + +++ L   GL  ++           AI   T KK G+ C  + Q  + Q
Subjt:  MGEYWQDLVSGDNTTAWQTKWAIHGTCLAAVFDEFKYF--CLGLDTYGRHAVVSFLVHGGLVSSSAQLHDKTGFIKAIADVTSKKGGVICGAD-QRGRTQ

Query:  LQKVVLCYSKDGATMIDCLDNVSSSCPDKFFWL
        L +++LC+ K+G T+IDC      +CP +F WL
Subjt:  LQKVVLCYSKDGATMIDCLDNVSSSCPDKFFWL

A0A6J1F837 Ribonuclease T(2)5.7e-1532.33Show/hide
Query:  MGEYWQDLVSGDNTTAWQTKWAIHGTCLAAVFDEFKYFCLGLDTYGRHA--VVSFLVHGGLVSSSAQLHDKTGFIKAIADVTSKKGGVIC--GADQRGRT
        +  YW D++ G N   WQ +W  HG C    F++ +YF + L+    H+  +++ L   GL  S   + +      AI   T KK G+ C   A  + + 
Subjt:  MGEYWQDLVSGDNTTAWQTKWAIHGTCLAAVFDEFKYFCLGLDTYGRHA--VVSFLVHGGLVSSSAQLHDKTGFIKAIADVTSKKGGVIC--GADQRGRT

Query:  QLQKVVLCYSKDGATMIDCLDNVSSSCPDKFFW
        QL +++LC+ KDG T+IDC +    +CP +F W
Subjt:  QLQKVVLCYSKDGATMIDCLDNVSSSCPDKFFW

A0A6J1IAR7 Ribonuclease T(2)6.3e-1431.58Show/hide
Query:  MGEYWQDLVSGDNTTAWQTKWAIHGTCLAAVFDEFKYF--CLGLDTYGRHAVVSFLVHGGLVSSSAQLHDKTGFIKAIADVTSKKGGVICGAD-QRGRTQ
        +  YW D+++G+N   W+ +W  HGTC    F++ +YF   L + T   + +++ L   GL  ++           AI   T KK G+ C  + Q  R Q
Subjt:  MGEYWQDLVSGDNTTAWQTKWAIHGTCLAAVFDEFKYF--CLGLDTYGRHAVVSFLVHGGLVSSSAQLHDKTGFIKAIADVTSKKGGVICGAD-QRGRTQ

Query:  LQKVVLCYSKDGATMIDCLDNVSSSCPDKFFWL
        L +++LC+ K+G T+I+C      +CP +F WL
Subjt:  LQKVVLCYSKDGATMIDCLDNVSSSCPDKFFWL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCGAATACTGGCAAGACCTAGTTAGCGGGGACAACACCACGGCTTGGCAGACCAAATGGGCAATCCACGGGACTTGCTTGGCCGCGGTGTTCGATGAGTTCAAGTA
CTTTTGCTTGGGTTTGGATACGTACGGCCGCCATGCTGTCGTGTCATTTCTGGTGCACGGTGGCCTGGTCTCGAGCTCTGCTCAGCTGCATGACAAGACTGGCTTTATCA
AAGCCATCGCCGATGTGACCTCGAAAAAGGGCGGCGTCATCTGCGGGGCCGACCAGCGGGGCCGAACACAGCTGCAGAAGGTCGTTTTGTGTTATAGTAAAGATGGTGCA
ACAATGATCGACTGCCTTGATAATGTCAGTAGTTCTTGCCCTGATAAGTTCTTCTGGCTTGCCTTGGGTGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGCGAATACTGGCAAGACCTAGTTAGCGGGGACAACACCACGGCTTGGCAGACCAAATGGGCAATCCACGGGACTTGCTTGGCCGCGGTGTTCGATGAGTTCAAGTA
CTTTTGCTTGGGTTTGGATACGTACGGCCGCCATGCTGTCGTGTCATTTCTGGTGCACGGTGGCCTGGTCTCGAGCTCTGCTCAGCTGCATGACAAGACTGGCTTTATCA
AAGCCATCGCCGATGTGACCTCGAAAAAGGGCGGCGTCATCTGCGGGGCCGACCAGCGGGGCCGAACACAGCTGCAGAAGGTCGTTTTGTGTTATAGTAAAGATGGTGCA
ACAATGATCGACTGCCTTGATAATGTCAGTAGTTCTTGCCCTGATAAGTTCTTCTGGCTTGCCTTGGGTGATTGA
Protein sequenceShow/hide protein sequence
MGEYWQDLVSGDNTTAWQTKWAIHGTCLAAVFDEFKYFCLGLDTYGRHAVVSFLVHGGLVSSSAQLHDKTGFIKAIADVTSKKGGVICGADQRGRTQLQKVVLCYSKDGA
TMIDCLDNVSSSCPDKFFWLALGD