; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS024343 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS024343
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRibonuclease T(2)
Genome locationscaffold318:226435..226839
RNA-Seq ExpressionMS024343
SyntenyMS024343
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0016020 - membrane (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0033897 - ribonuclease T2 activity (molecular function)
InterPro domainsIPR001568 - Ribonuclease T2-like
IPR036430 - Ribonuclease T2-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN45018.2 hypothetical protein Csa_016393 [Cucumis sativus]1.8e-4767.91Show/hide
Query:  MGEYWQDLVSGDNTAAWQTKWAIHGTCSATVFDEFKYFCMGLDTYGRHAILSFLVHGGLVPSSAQLHHKTSFIKAIADVTSKKGGVICAADQGGRTQLQM
        M +YW+DL +G++  AW +KW +HGTCSA  FD+FKYFC+GLDTYGRHAI SFL   GL PSS++   K SFI AIA+ T KKGGVICA DQ  R QLQ 
Subjt:  MGEYWQDLVSGDNTAAWQTKWAIHGTCSATVFDEFKYFCMGLDTYGRHAILSFLVHGGLVPSSAQLHHKTSFIKAIADVTSKKGGVICAADQGGRTQLQM

Query:  VVLCYSKDGATMIDCPDNVSSSCPDKFLWLALGD
         VLCY KDG T+IDCPDNVSSSCPD F+WLALGD
Subjt:  VVLCYSKDGATMIDCPDNVSSSCPDKFLWLALGD
XP_004149779.2 ribonuclease MC [Cucumis sativus]1.8e-4767.91Show/hide
Query:  MGEYWQDLVSGDNTAAWQTKWAIHGTCSATVFDEFKYFCMGLDTYGRHAILSFLVHGGLVPSSAQLHHKTSFIKAIADVTSKKGGVICAADQGGRTQLQM
        M +YW+DL +G++  AW +KW +HGTCSA  FD+FKYFC+GLDTYGRHAI SFL   GL PSS++   K SFI AIA+ T KKGGVICA DQ  R QLQ 
Subjt:  MGEYWQDLVSGDNTAAWQTKWAIHGTCSATVFDEFKYFCMGLDTYGRHAILSFLVHGGLVPSSAQLHHKTSFIKAIADVTSKKGGVICAADQGGRTQLQM

Query:  VVLCYSKDGATMIDCPDNVSSSCPDKFLWLALGD
         VLCY KDG T+IDCPDNVSSSCPD F+WLALGD
Subjt:  VVLCYSKDGATMIDCPDNVSSSCPDKFLWLALGD
XP_022143591.1 ribonuclease 1-like [Momordica charantia]7.3e-7398.51Show/hide
Query:  MGEYWQDLVSGDNTAAWQTKWAIHGTCSATVFDEFKYFCMGLDTYGRHAILSFLVHGGLVPSSAQLHHKTSFIKAIADVTSKKGGVICAADQGGRTQLQM
        MGEYWQDLVSGDNTAAWQTKWAIHGTCSATVFDEFKYFCMGLDTYGRHAILSFLVHGGLVPSSAQLHHKTSFIKAIADVTSKKGGVICAADQ GRTQL+M
Subjt:  MGEYWQDLVSGDNTAAWQTKWAIHGTCSATVFDEFKYFCMGLDTYGRHAILSFLVHGGLVPSSAQLHHKTSFIKAIADVTSKKGGVICAADQGGRTQLQM

Query:  VVLCYSKDGATMIDCPDNVSSSCPDKFLWLALGD
        VVLCYSKDGATMIDCPDNVSSSCPDKFLWLALGD
Subjt:  VVLCYSKDGATMIDCPDNVSSSCPDKFLWLALGD
XP_022932791.1 ribonuclease MC-like [Cucurbita moschata]3.7e-1633.83Show/hide
Query:  MGEYWQDLVSGDNTAAWQTKWAIHGTCSATVFDEFKYF--CMGLDTYGRHAILSFLVHGGLVPSSAQLHHKTSFIKAIADVTSKKGGVICAAD-QGGRTQ
        +  YW D++SG+N   W+ +W  HGTCS   F++ +YF   + + T   + +L+ L   GL P++       +   AI   T KK G+ C  + Q  + Q
Subjt:  MGEYWQDLVSGDNTAAWQTKWAIHGTCSATVFDEFKYF--CMGLDTYGRHAILSFLVHGGLVPSSAQLHHKTSFIKAIADVTSKKGGVICAAD-QGGRTQ

Query:  LQMVVLCYSKDGATMIDCPDNVSSSCPDKFLWL
        L  ++LC+ K+G T+IDC      +CP +F+WL
Subjt:  LQMVVLCYSKDGATMIDCPDNVSSSCPDKFLWL
XP_038899255.1 ribonuclease MC-like [Benincasa hispida]7.8e-5979.85Show/hide
Query:  MGEYWQDLVSGDNTAAWQTKWAIHGTCSATVFDEFKYFCMGLDTYGRHAILSFLVHGGLVPSSAQLHHKTSFIKAIADVTSKKGGVICAADQGGRTQLQM
        M +YWQDL +G+   AW +KWAIHGTCSATVFDEFKYFC+GLDTYGRHA+LSFLVHGGLVPSS++   KTSF+KAIAD+TSKKGGVICA DQ GRTQLQ 
Subjt:  MGEYWQDLVSGDNTAAWQTKWAIHGTCSATVFDEFKYFCMGLDTYGRHAILSFLVHGGLVPSSAQLHHKTSFIKAIADVTSKKGGVICAADQGGRTQLQM

Query:  VVLCYSKDGATMIDCPDNVSSSCPDKFLWLALGD
         VLCY+KDG T+IDCPDNVSSSCPD FLWLALGD
Subjt:  VVLCYSKDGATMIDCPDNVSSSCPDKFLWLALGD
TrEMBL top hitse value%identityAlignment
A0A0A0K4L1 Uncharacterized protein8.8e-4867.91Show/hide
Query:  MGEYWQDLVSGDNTAAWQTKWAIHGTCSATVFDEFKYFCMGLDTYGRHAILSFLVHGGLVPSSAQLHHKTSFIKAIADVTSKKGGVICAADQGGRTQLQM
        M +YW+DL +G++  AW +KW +HGTCSA  FD+FKYFC+GLDTYGRHAI SFL   GL PSS++   K SFI AIA+ T KKGGVICA DQ  R QLQ 
Subjt:  MGEYWQDLVSGDNTAAWQTKWAIHGTCSATVFDEFKYFCMGLDTYGRHAILSFLVHGGLVPSSAQLHHKTSFIKAIADVTSKKGGVICAADQGGRTQLQM

Query:  VVLCYSKDGATMIDCPDNVSSSCPDKFLWLALGD
         VLCY KDG T+IDCPDNVSSSCPD F+WLALGD
Subjt:  VVLCYSKDGATMIDCPDNVSSSCPDKFLWLALGD
A0A0A0LAN6 Ribonuclease T(2)6.8e-1637.3Show/hide
Query:  WQDLVSGDNTAAWQTKWAIHGTCSATVFDEFKYFCMGLDTYGRHAILSFLVHGGLVPSSAQLHHKTSFIKAIADVTSKKGGVICAAD-QGGRTQLQMVVL
        W DL  G+N   W  +W  HG CS   F  F+YF + L+   +  +L+ L   GL P ++Q     + +  I   T K  G+ C  + + G++QL  +VL
Subjt:  WQDLVSGDNTAAWQTKWAIHGTCSATVFDEFKYFCMGLDTYGRHAILSFLVHGGLVPSSAQLHHKTSFIKAIADVTSKKGGVICAAD-QGGRTQLQMVVL

Query:  CYSKDGATMIDCPDNVSSSCPDKFLW
        C  KDGAT+IDCP  VS++C   F+W
Subjt:  CYSKDGATMIDCPDNVSSSCPDKFLW
A0A6J1CQQ9 ribonuclease 1-like3.5e-7398.51Show/hide
Query:  MGEYWQDLVSGDNTAAWQTKWAIHGTCSATVFDEFKYFCMGLDTYGRHAILSFLVHGGLVPSSAQLHHKTSFIKAIADVTSKKGGVICAADQGGRTQLQM
        MGEYWQDLVSGDNTAAWQTKWAIHGTCSATVFDEFKYFCMGLDTYGRHAILSFLVHGGLVPSSAQLHHKTSFIKAIADVTSKKGGVICAADQ GRTQL+M
Subjt:  MGEYWQDLVSGDNTAAWQTKWAIHGTCSATVFDEFKYFCMGLDTYGRHAILSFLVHGGLVPSSAQLHHKTSFIKAIADVTSKKGGVICAADQGGRTQLQM

Query:  VVLCYSKDGATMIDCPDNVSSSCPDKFLWLALGD
        VVLCYSKDGATMIDCPDNVSSSCPDKFLWLALGD
Subjt:  VVLCYSKDGATMIDCPDNVSSSCPDKFLWLALGD
A0A6J1EXD5 Ribonuclease T(2)1.8e-1633.83Show/hide
Query:  MGEYWQDLVSGDNTAAWQTKWAIHGTCSATVFDEFKYF--CMGLDTYGRHAILSFLVHGGLVPSSAQLHHKTSFIKAIADVTSKKGGVICAAD-QGGRTQ
        +  YW D++SG+N   W+ +W  HGTCS   F++ +YF   + + T   + +L+ L   GL P++       +   AI   T KK G+ C  + Q  + Q
Subjt:  MGEYWQDLVSGDNTAAWQTKWAIHGTCSATVFDEFKYF--CMGLDTYGRHAILSFLVHGGLVPSSAQLHHKTSFIKAIADVTSKKGGVICAAD-QGGRTQ

Query:  LQMVVLCYSKDGATMIDCPDNVSSSCPDKFLWL
        L  ++LC+ K+G T+IDC      +CP +F+WL
Subjt:  LQMVVLCYSKDGATMIDCPDNVSSSCPDKFLWL
A0A6J1F837 Ribonuclease T(2)4.0e-1634.59Show/hide
Query:  MGEYWQDLVSGDNTAAWQTKWAIHGTCSATVFDEFKYFCMGLDTYGRHA--ILSFLVHGGLVPSSAQLHHKTSFIKAIADVTSKKGGVIC--AADQGGRT
        +  YW D++ G N   WQ +W  HG CS   F++ +YF + L+    H+  +L+ L   GL PS   +        AI   T KK G+ C   A    + 
Subjt:  MGEYWQDLVSGDNTAAWQTKWAIHGTCSATVFDEFKYFCMGLDTYGRHA--ILSFLVHGGLVPSSAQLHHKTSFIKAIADVTSKKGGVIC--AADQGGRT

Query:  QLQMVVLCYSKDGATMIDCPDNVSSSCPDKFLW
        QL  ++LC+ KDG T+IDC +    +CP +F+W
Subjt:  QLQMVVLCYSKDGATMIDCPDNVSSSCPDKFLW
SwissProt top hitse value%identityAlignment
P23540 Ribonuclease MC2.0e-0931.03Show/hide
Query:  WQDLVSGDNTAAWQTKWAIHGTCSATVFDEFKYFCMGLDTYGRHAILSFLVHGGLVPSSAQLHHKTSFIKAIADVTSKK----GGVICAAD-QGGRTQLQ
        W +++  +N   W  +W  HGTCS + F++  YF + +D    + I+     G L P +A  + +T   +AI      K     G+ C  D Q   + L 
Subjt:  WQDLVSGDNTAAWQTKWAIHGTCSATVFDEFKYFCMGLDTYGRHAILSFLVHGGLVPSSAQLHHKTSFIKAIADVTSKK----GGVICAAD-QGGRTQLQ

Query:  MVVLCYSKDGATMIDC
         VV C+++DG+T+IDC
Subjt:  MVVLCYSKDGATMIDC
Q7M438 Ribonuclease DdI7.7e-0930.58Show/hide
Query:  WQDLVSGDNTAAWQTKWAIHGTCSAT--VFDEFKYFCMGLDTYGRHAILSFLVHGGLVPSSAQLHHKTSFIKAIADVTSKKGGVICAADQGGRTQLQMVV
        W  L +G NT  W  +++ HGTCS T  + D   YF  G+  Y    I + L    + PS +  +       AI      K G+ C++      QL  V 
Subjt:  WQDLVSGDNTAAWQTKWAIHGTCSAT--VFDEFKYFCMGLDTYGRHAILSFLVHGGLVPSSAQLHHKTSFIKAIADVTSKKGGVICAADQGGRTQLQMVV

Query:  LCYSKDGATMIDCPDNVSSSC
        +C  K+  +++DCPD    SC
Subjt:  LCYSKDGATMIDCPDNVSSSC
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCGAATACTGGCAAGACCTAGTCAGCGGAGACAACACCGCGGCTTGGCAGACCAAATGGGCAATCCACGGGACTTGCTCGGCCACGGTGTTCGACGAGTTCAAGTA
CTTCTGCATGGGTTTGGATACGTATGGCCGCCATGCTATCCTATCATTTCTGGTGCACGGCGGCCTGGTCCCGAGCTCTGCTCAACTGCACCACAAGACTAGCTTTATCA
AAGCCATTGCCGACGTGACCTCGAAAAAGGGCGGCGTCATCTGTGCGGCCGACCAGGGGGGCCGAACACAGCTGCAGATGGTGGTTTTGTGTTATAGTAAAGATGGTGCA
ACAATGATCGACTGCCCTGATAATGTCAGTAGTTCCTGCCCTGATAAGTTCTTGTGGCTTGCCTTGGGTGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGCGAATACTGGCAAGACCTAGTCAGCGGAGACAACACCGCGGCTTGGCAGACCAAATGGGCAATCCACGGGACTTGCTCGGCCACGGTGTTCGACGAGTTCAAGTA
CTTCTGCATGGGTTTGGATACGTATGGCCGCCATGCTATCCTATCATTTCTGGTGCACGGCGGCCTGGTCCCGAGCTCTGCTCAACTGCACCACAAGACTAGCTTTATCA
AAGCCATTGCCGACGTGACCTCGAAAAAGGGCGGCGTCATCTGTGCGGCCGACCAGGGGGGCCGAACACAGCTGCAGATGGTGGTTTTGTGTTATAGTAAAGATGGTGCA
ACAATGATCGACTGCCCTGATAATGTCAGTAGTTCCTGCCCTGATAAGTTCTTGTGGCTTGCCTTGGGTGATTGA
Protein sequenceShow/hide protein sequence
MGEYWQDLVSGDNTAAWQTKWAIHGTCSATVFDEFKYFCMGLDTYGRHAILSFLVHGGLVPSSAQLHHKTSFIKAIADVTSKKGGVICAADQGGRTQLQMVVLCYSKDGA
TMIDCPDNVSSSCPDKFLWLALGD