; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS024405 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS024405
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionProtein FAR1-RELATED SEQUENCE
Genome locationscaffold111:199503..201513
RNA-Seq ExpressionMS024405
SyntenyMS024405
Gene Ontology termsGO:0009585 - red, far-red light phototransduction (biological process)
GO:0010218 - response to far red light (biological process)
GO:0042753 - positive regulation of circadian rhythm (biological process)
GO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:1900056 - negative regulation of leaf senescence (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0001228 - DNA-binding transcription activator activity, RNA polymerase II-specific (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577094.1 Protein FAR-RED ELONGATED HYPOCOTYL 3, partial [Cucurbita argyrosperma subsp. sororia]5.8e-6590.58Show/hide
Query:  MGKTSKKKNPTKKRKVNAEPDVMTVGAQDSLQQMDKLASRAVTLDGYFGAQPSVQGMVQLNLMAPTRDNYYGNQQAIQGLGQLNSIAPSHDGYYAAQQSI
        +GKT+KKKNPTKKRKVN+EPDVMTVGA D+LQ MDKL+SRAVTLDGYFGAQPSVQGMVQLNLMAPTRDNYYGNQQAIQGLGQLNSIAPSHDGYY AQ SI
Subjt:  MGKTSKKKNPTKKRKVNAEPDVMTVGAQDSLQQMDKLASRAVTLDGYFGAQPSVQGMVQLNLMAPTRDNYYGNQQAIQGLGQLNSIAPSHDGYYAAQQSI

Query:  HGLGQMDFFRAPTGFTYSMRDDPNVRTTQLHDDASRHA
        HGLGQMDFFRAP GF Y +RDDPNVRTTQLHDDASRHA
Subjt:  HGLGQMDFFRAPTGFTYSMRDDPNVRTTQLHDDASRHA

XP_004147733.1 protein FAR-RED ELONGATED HYPOCOTYL 3 [Cucumis sativus]8.0e-6793.48Show/hide
Query:  MGKTSKKKNPTKKRKVNAEPDVMTVGAQDSLQQMDKLASRAVTLDGYFGAQPSVQGMVQLNLMAPTRDNYYGNQQAIQGLGQLNSIAPSHDGYYAAQQSI
        +GKT+KKKNPTKKRKVN EPDVMTVGAQDSLQQMDKL+SRAVTLDGYFGAQPSVQGMVQLNLMAPTRDNYYGNQQAIQGLGQLNSIAPSHDGYYAAQQSI
Subjt:  MGKTSKKKNPTKKRKVNAEPDVMTVGAQDSLQQMDKLASRAVTLDGYFGAQPSVQGMVQLNLMAPTRDNYYGNQQAIQGLGQLNSIAPSHDGYYAAQQSI

Query:  HGLGQMDFFRAPTGFTYSMRDDPNVRTTQLHDDASRHA
        HGLGQMDFFR   GFTY +RDDPNVRTTQLHDDASRHA
Subjt:  HGLGQMDFFRAPTGFTYSMRDDPNVRTTQLHDDASRHA

XP_016901159.1 PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3 [Cucumis melo]2.8e-6793.48Show/hide
Query:  MGKTSKKKNPTKKRKVNAEPDVMTVGAQDSLQQMDKLASRAVTLDGYFGAQPSVQGMVQLNLMAPTRDNYYGNQQAIQGLGQLNSIAPSHDGYYAAQQSI
        +GKT+KKKNPTKKRKVN EPDVMTVGAQDSLQQMDKL+SRAVTLDGYFGAQP VQGMVQLNLMAPTRDNYYGNQQAIQGLGQLNSIAPSHDGYYAAQQSI
Subjt:  MGKTSKKKNPTKKRKVNAEPDVMTVGAQDSLQQMDKLASRAVTLDGYFGAQPSVQGMVQLNLMAPTRDNYYGNQQAIQGLGQLNSIAPSHDGYYAAQQSI

Query:  HGLGQMDFFRAPTGFTYSMRDDPNVRTTQLHDDASRHA
        HGLGQMDFFR P GFTY +RDDPNVRTTQLHDDASRHA
Subjt:  HGLGQMDFFRAPTGFTYSMRDDPNVRTTQLHDDASRHA

XP_022136406.1 protein FAR-RED ELONGATED HYPOCOTYL 3 [Momordica charantia]7.0e-7199.28Show/hide
Query:  MGKTSKKKNPTKKRKVNAEPDVMTVGAQDSLQQMDKLASRAVTLDGYFGAQPSVQGMVQLNLMAPTRDNYYGNQQAIQGLGQLNSIAPSHDGYYAAQQSI
        MGKTSKKKNPTKKRKVNAEPDVMTVGAQDSLQQMDKLASRAVTLDGYFG QPSVQGMVQLNLMAPTRDNYYGNQQAIQGLGQLNSIAPSHDGYYAAQQSI
Subjt:  MGKTSKKKNPTKKRKVNAEPDVMTVGAQDSLQQMDKLASRAVTLDGYFGAQPSVQGMVQLNLMAPTRDNYYGNQQAIQGLGQLNSIAPSHDGYYAAQQSI

Query:  HGLGQMDFFRAPTGFTYSMRDDPNVRTTQLHDDASRHA
        HGLGQMDFFRAPTGFTYSMRDDPNVRTTQLHDDASRHA
Subjt:  HGLGQMDFFRAPTGFTYSMRDDPNVRTTQLHDDASRHA

XP_038883958.1 protein FAR-RED ELONGATED HYPOCOTYL 3 [Benincasa hispida]1.4e-6692.75Show/hide
Query:  MGKTSKKKNPTKKRKVNAEPDVMTVGAQDSLQQMDKLASRAVTLDGYFGAQPSVQGMVQLNLMAPTRDNYYGNQQAIQGLGQLNSIAPSHDGYYAAQQSI
        +GKT+KKKNPTKKRKVN EPDVMTVGAQDSLQQMDKL+SRAVTLDGYFG QPSVQGMVQLNLMAPTRDNYYGNQQAIQGLGQLNSIAPSHDGYYAAQ SI
Subjt:  MGKTSKKKNPTKKRKVNAEPDVMTVGAQDSLQQMDKLASRAVTLDGYFGAQPSVQGMVQLNLMAPTRDNYYGNQQAIQGLGQLNSIAPSHDGYYAAQQSI

Query:  HGLGQMDFFRAPTGFTYSMRDDPNVRTTQLHDDASRHA
        HGLGQMDFFR P GFTY +RDDPNVRTTQLHDDASRHA
Subjt:  HGLGQMDFFRAPTGFTYSMRDDPNVRTTQLHDDASRHA

TrEMBL top hitse value%identityAlignment
A0A0A0KV81 Protein FAR1-RELATED SEQUENCE3.9e-6793.48Show/hide
Query:  MGKTSKKKNPTKKRKVNAEPDVMTVGAQDSLQQMDKLASRAVTLDGYFGAQPSVQGMVQLNLMAPTRDNYYGNQQAIQGLGQLNSIAPSHDGYYAAQQSI
        +GKT+KKKNPTKKRKVN EPDVMTVGAQDSLQQMDKL+SRAVTLDGYFGAQPSVQGMVQLNLMAPTRDNYYGNQQAIQGLGQLNSIAPSHDGYYAAQQSI
Subjt:  MGKTSKKKNPTKKRKVNAEPDVMTVGAQDSLQQMDKLASRAVTLDGYFGAQPSVQGMVQLNLMAPTRDNYYGNQQAIQGLGQLNSIAPSHDGYYAAQQSI

Query:  HGLGQMDFFRAPTGFTYSMRDDPNVRTTQLHDDASRHA
        HGLGQMDFFR   GFTY +RDDPNVRTTQLHDDASRHA
Subjt:  HGLGQMDFFRAPTGFTYSMRDDPNVRTTQLHDDASRHA

A0A1S4DYW2 Protein FAR1-RELATED SEQUENCE1.3e-6793.48Show/hide
Query:  MGKTSKKKNPTKKRKVNAEPDVMTVGAQDSLQQMDKLASRAVTLDGYFGAQPSVQGMVQLNLMAPTRDNYYGNQQAIQGLGQLNSIAPSHDGYYAAQQSI
        +GKT+KKKNPTKKRKVN EPDVMTVGAQDSLQQMDKL+SRAVTLDGYFGAQP VQGMVQLNLMAPTRDNYYGNQQAIQGLGQLNSIAPSHDGYYAAQQSI
Subjt:  MGKTSKKKNPTKKRKVNAEPDVMTVGAQDSLQQMDKLASRAVTLDGYFGAQPSVQGMVQLNLMAPTRDNYYGNQQAIQGLGQLNSIAPSHDGYYAAQQSI

Query:  HGLGQMDFFRAPTGFTYSMRDDPNVRTTQLHDDASRHA
        HGLGQMDFFR P GFTY +RDDPNVRTTQLHDDASRHA
Subjt:  HGLGQMDFFRAPTGFTYSMRDDPNVRTTQLHDDASRHA

A0A5A7TPD3 Protein FAR1-RELATED SEQUENCE1.3e-6793.48Show/hide
Query:  MGKTSKKKNPTKKRKVNAEPDVMTVGAQDSLQQMDKLASRAVTLDGYFGAQPSVQGMVQLNLMAPTRDNYYGNQQAIQGLGQLNSIAPSHDGYYAAQQSI
        +GKT+KKKNPTKKRKVN EPDVMTVGAQDSLQQMDKL+SRAVTLDGYFGAQP VQGMVQLNLMAPTRDNYYGNQQAIQGLGQLNSIAPSHDGYYAAQQSI
Subjt:  MGKTSKKKNPTKKRKVNAEPDVMTVGAQDSLQQMDKLASRAVTLDGYFGAQPSVQGMVQLNLMAPTRDNYYGNQQAIQGLGQLNSIAPSHDGYYAAQQSI

Query:  HGLGQMDFFRAPTGFTYSMRDDPNVRTTQLHDDASRHA
        HGLGQMDFFR P GFTY +RDDPNVRTTQLHDDASRHA
Subjt:  HGLGQMDFFRAPTGFTYSMRDDPNVRTTQLHDDASRHA

A0A6J1C7I0 Protein FAR1-RELATED SEQUENCE3.4e-7199.28Show/hide
Query:  MGKTSKKKNPTKKRKVNAEPDVMTVGAQDSLQQMDKLASRAVTLDGYFGAQPSVQGMVQLNLMAPTRDNYYGNQQAIQGLGQLNSIAPSHDGYYAAQQSI
        MGKTSKKKNPTKKRKVNAEPDVMTVGAQDSLQQMDKLASRAVTLDGYFG QPSVQGMVQLNLMAPTRDNYYGNQQAIQGLGQLNSIAPSHDGYYAAQQSI
Subjt:  MGKTSKKKNPTKKRKVNAEPDVMTVGAQDSLQQMDKLASRAVTLDGYFGAQPSVQGMVQLNLMAPTRDNYYGNQQAIQGLGQLNSIAPSHDGYYAAQQSI

Query:  HGLGQMDFFRAPTGFTYSMRDDPNVRTTQLHDDASRHA
        HGLGQMDFFRAPTGFTYSMRDDPNVRTTQLHDDASRHA
Subjt:  HGLGQMDFFRAPTGFTYSMRDDPNVRTTQLHDDASRHA

A0A6J1JAD6 Protein FAR1-RELATED SEQUENCE2.8e-6590.58Show/hide
Query:  MGKTSKKKNPTKKRKVNAEPDVMTVGAQDSLQQMDKLASRAVTLDGYFGAQPSVQGMVQLNLMAPTRDNYYGNQQAIQGLGQLNSIAPSHDGYYAAQQSI
        +GKT+KKKNPTKKRKVN+EPDVMTVGA D+LQ MDKL+SRAVTLDGYFGAQPSVQGMVQLNLMAPTRDNYYGNQQAIQGLGQLNSIAPSHDGYY AQ SI
Subjt:  MGKTSKKKNPTKKRKVNAEPDVMTVGAQDSLQQMDKLASRAVTLDGYFGAQPSVQGMVQLNLMAPTRDNYYGNQQAIQGLGQLNSIAPSHDGYYAAQQSI

Query:  HGLGQMDFFRAPTGFTYSMRDDPNVRTTQLHDDASRHA
        HGLGQMDFFRAP GF Y +RDDPNVRTTQLHDDASRHA
Subjt:  HGLGQMDFFRAPTGFTYSMRDDPNVRTTQLHDDASRHA

SwissProt top hitse value%identityAlignment
Q9LIE5 Protein FAR-RED ELONGATED HYPOCOTYL 34.2e-5072.99Show/hide
Query:  GKTSKKKNPTKKRKVNAEPDVMTVGAQDSLQQMDKLASRAVTLDGYFGAQPSVQGMVQLNLMAPTRDNYYGNQQAIQGLGQLNSIAPSHDGYYAAQQSIH
        GKTSKKKNPTKKRKVN E DVM V A +SLQQMDKL+ R V ++ Y+G Q SVQGMVQLNLM PTRDN+YGNQQ +QGL QLNSIAPS+D YY  QQ IH
Subjt:  GKTSKKKNPTKKRKVNAEPDVMTVGAQDSLQQMDKLASRAVTLDGYFGAQPSVQGMVQLNLMAPTRDNYYGNQQAIQGLGQLNSIAPSHDGYYAAQQSIH

Query:  GLGQMDFFRAPTGFTYSMRDDPNVRTTQLHDDASRHA
        G G +DFFR P  F+Y +RDDPNVRTTQLH+DASRH+
Subjt:  GLGQMDFFRAPTGFTYSMRDDPNVRTTQLHDDASRHA

Q9SWG3 Protein FAR-RED IMPAIRED RESPONSE 11.4e-2144.44Show/hide
Query:  KTSKKKNPTKKRKVNAEPDVMTVGAQDSLQQMDKLASRAVTLDGYFGAQPSVQGMVQLNLMAPTRDNYYGNQQAIQGLGQLNSIAPSHDGYYAAQQSIHG
        K +KKK   +KRK   E   M + +Q SLQ M+ ++S A+ ++GY+G Q +VQG+  LNLM P  + YY +Q+ IQGLGQLNSIAP+ D ++  QQ++ G
Subjt:  KTSKKKNPTKKRKVNAEPDVMTVGAQDSLQQMDKLASRAVTLDGYFGAQPSVQGMVQLNLMAPTRDNYYGNQQAIQGLGQLNSIAPSHDGYYAAQQSIHG

Query:  L-GQMDFFRAPTGFTYSMRDDPNVRTTQLHDDASR
        + GQ+D FR P  FTY+++++ ++ + QL   +SR
Subjt:  L-GQMDFFRAPTGFTYSMRDDPNVRTTQLHDDASR

Arabidopsis top hitse value%identityAlignment
AT3G22170.1 far-red elongated hypocotyls 33.0e-5172.99Show/hide
Query:  GKTSKKKNPTKKRKVNAEPDVMTVGAQDSLQQMDKLASRAVTLDGYFGAQPSVQGMVQLNLMAPTRDNYYGNQQAIQGLGQLNSIAPSHDGYYAAQQSIH
        GKTSKKKNPTKKRKVN E DVM V A +SLQQMDKL+ R V ++ Y+G Q SVQGMVQLNLM PTRDN+YGNQQ +QGL QLNSIAPS+D YY  QQ IH
Subjt:  GKTSKKKNPTKKRKVNAEPDVMTVGAQDSLQQMDKLASRAVTLDGYFGAQPSVQGMVQLNLMAPTRDNYYGNQQAIQGLGQLNSIAPSHDGYYAAQQSIH

Query:  GLGQMDFFRAPTGFTYSMRDDPNVRTTQLHDDASRHA
        G G +DFFR P  F+Y +RDDPNVRTTQLH+DASRH+
Subjt:  GLGQMDFFRAPTGFTYSMRDDPNVRTTQLHDDASRHA

AT3G22170.2 far-red elongated hypocotyls 33.0e-5172.99Show/hide
Query:  GKTSKKKNPTKKRKVNAEPDVMTVGAQDSLQQMDKLASRAVTLDGYFGAQPSVQGMVQLNLMAPTRDNYYGNQQAIQGLGQLNSIAPSHDGYYAAQQSIH
        GKTSKKKNPTKKRKVN E DVM V A +SLQQMDKL+ R V ++ Y+G Q SVQGMVQLNLM PTRDN+YGNQQ +QGL QLNSIAPS+D YY  QQ IH
Subjt:  GKTSKKKNPTKKRKVNAEPDVMTVGAQDSLQQMDKLASRAVTLDGYFGAQPSVQGMVQLNLMAPTRDNYYGNQQAIQGLGQLNSIAPSHDGYYAAQQSIH

Query:  GLGQMDFFRAPTGFTYSMRDDPNVRTTQLHDDASRHA
        G G +DFFR P  F+Y +RDDPNVRTTQLH+DASRH+
Subjt:  GLGQMDFFRAPTGFTYSMRDDPNVRTTQLHDDASRHA

AT4G15090.1 FRS (FAR1 Related Sequences) transcription factor family9.9e-2344.44Show/hide
Query:  KTSKKKNPTKKRKVNAEPDVMTVGAQDSLQQMDKLASRAVTLDGYFGAQPSVQGMVQLNLMAPTRDNYYGNQQAIQGLGQLNSIAPSHDGYYAAQQSIHG
        K +KKK   +KRK   E   M + +Q SLQ M+ ++S A+ ++GY+G Q +VQG+  LNLM P  + YY +Q+ IQGLGQLNSIAP+ D ++  QQ++ G
Subjt:  KTSKKKNPTKKRKVNAEPDVMTVGAQDSLQQMDKLASRAVTLDGYFGAQPSVQGMVQLNLMAPTRDNYYGNQQAIQGLGQLNSIAPSHDGYYAAQQSIHG

Query:  L-GQMDFFRAPTGFTYSMRDDPNVRTTQLHDDASR
        + GQ+D FR P  FTY+++++ ++ + QL   +SR
Subjt:  L-GQMDFFRAPTGFTYSMRDDPNVRTTQLHDDASR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCAAGACAAGCAAGAAAAAGAATCCAACAAAGAAGAGGAAGGTGAATGCTGAGCCTGATGTCATGACTGTTGGAGCACAAGACAGCTTGCAGCAGATGGATAAATT
AGCCTCAAGAGCAGTAACCCTTGATGGCTATTTTGGCGCACAGCCAAGTGTGCAAGGAATGGTACAGCTTAACTTAATGGCACCAACCCGTGATAATTATTATGGAAACC
AACAGGCCATTCAGGGGCTGGGGCAATTAAACTCAATAGCACCTAGCCATGATGGTTACTACGCTGCTCAACAGAGTATTCACGGACTGGGACAAATGGATTTTTTCCGA
GCGCCAACTGGTTTCACCTATAGCATGCGGGATGATCCAAATGTACGAACTACTCAGTTGCATGATGATGCATCAAGACATGCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGCAAGACAAGCAAGAAAAAGAATCCAACAAAGAAGAGGAAGGTGAATGCTGAGCCTGATGTCATGACTGTTGGAGCACAAGACAGCTTGCAGCAGATGGATAAATT
AGCCTCAAGAGCAGTAACCCTTGATGGCTATTTTGGCGCACAGCCAAGTGTGCAAGGAATGGTACAGCTTAACTTAATGGCACCAACCCGTGATAATTATTATGGAAACC
AACAGGCCATTCAGGGGCTGGGGCAATTAAACTCAATAGCACCTAGCCATGATGGTTACTACGCTGCTCAACAGAGTATTCACGGACTGGGACAAATGGATTTTTTCCGA
GCGCCAACTGGTTTCACCTATAGCATGCGGGATGATCCAAATGTACGAACTACTCAGTTGCATGATGATGCATCAAGACATGCATGA
Protein sequenceShow/hide protein sequence
MGKTSKKKNPTKKRKVNAEPDVMTVGAQDSLQQMDKLASRAVTLDGYFGAQPSVQGMVQLNLMAPTRDNYYGNQQAIQGLGQLNSIAPSHDGYYAAQQSIHGLGQMDFFR
APTGFTYSMRDDPNVRTTQLHDDASRHA