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MS024526 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS024526
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Genome locationscaffold234:2628201..2628671
RNA-Seq ExpressionMS024526
SyntenyMS024526
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAA3024443.1 Hypothetical predicted protein [Olea europaea subsp. europaea]2.4e-1466.67Show/hide
Query:  MMRGDRPPLSLPISSSISLASKQRPLLLTLISELALLLVARGESETLTVLLRDGPDRTLYIEEAGIFVINGRRLPGMLRLISCS
        M+ GDR  LSL  SSS SL S QR LLLTL SELA LLVA  ES+ L VLL   PD TLY+E+AGI VI+GRRLPGM RLI C+
Subjt:  MMRGDRPPLSLPISSSISLASKQRPLLLTLISELALLLVARGESETLTVLLRDGPDRTLYIEEAGIFVINGRRLPGMLRLISCS

KAE7996624.1 hypothetical protein FH972_001332 [Carpinus fangiana]2.2e-2051.88Show/hide
Query:  PLLLTLISELALLLVARGESETLTVLLRDGPDRTLYIEEAGIFVINGRRLPGMLRLISCSRIVCIVLNKNVKFIPKLRCQKGKIEIPFHQKDPLKKDWMH
        PLL TLISELALLLVARGESETL  LLR GPD TLYIE+AGIFVING                                                   +H
Subjt:  PLLLTLISELALLLVARGESETLTVLLRDGPDRTLYIEEAGIFVINGRRLPGMLRLISCSRIVCIVLNKNVKFIPKLRCQKGKIEIPFHQKDPLKKDWMH

Query:  TMCLIAISRDFLDSVLPKPELSGDE-DFPDRFP
        T+CLIAISRDF +SVLPKPELSGDE DFP+R P
Subjt:  TMCLIAISRDFLDSVLPKPELSGDE-DFPDRFP

KAF2581772.1 hypothetical protein F2Q68_00001724 [Brassica cretica]5.6e-1648.06Show/hide
Query:  LTLISELALLLVARGESETLTVLLRDGPDRTLYIEEAGIFVINGRRLPGMLRLISCSRIVCIVLNKNVKFIPKLRCQKGKIEIPFHQKDPLKKDWMHTMC
        LTLISELALLLVA GESET   L R  PD TLYI++AG+FVI+G R P   R                          G+               + T+C
Subjt:  LTLISELALLLVARGESETLTVLLRDGPDRTLYIEEAGIFVINGRRLPGMLRLISCSRIVCIVLNKNVKFIPKLRCQKGKIEIPFHQKDPLKKDWMHTMC

Query:  LIAISRDFLDSVLPKPELSGDEDFPDRFP
        LIAISRDFL+SVLPKP LSGDEDF D+ P
Subjt:  LIAISRDFLDSVLPKPELSGDEDFPDRFP

KAG6383321.1 hypothetical protein SASPL_156931 [Salvia splendens]4.7e-1545.75Show/hide
Query:  MRGDRPPLSLPISSSISLASKQRPLLLTLISELALLLVARGESETLTVLLRDGPDRTLYIEEAGIFVINGRRLPGMLRLISCSRIVCIVLNKNVKFIPKL
        +RG+R  LSL  SSS S  S  RP LLTL SEL LLLVA GESE L VLL  GPD TLY E+AG+ VI GRRLPG++RLISC                  
Subjt:  MRGDRPPLSLPISSSISLASKQRPLLLTLISELALLLVARGESETLTVLLRDGPDRTLYIEEAGIFVINGRRLPGMLRLISCSRIVCIVLNKNVKFIPKL

Query:  RCQKGKIEIPFHQKDPLKKDWMHTMCLIAISRDFLDSVLPKPELSGDEDFPDR
           KG+                  +C+         +VLP P LSGD+DFPD+
Subjt:  RCQKGKIEIPFHQKDPLKKDWMHTMCLIAISRDFLDSVLPKPELSGDEDFPDR

KAG6393548.1 hypothetical protein SASPL_147791 [Salvia splendens]3.6e-2351.95Show/hide
Query:  MRGDRPPLSLPISSSISLASKQRPLLLTLISELALLLVARGESETLTVLLRDGPDRTLYIEEAGIFVINGRRLPGMLRLISC-SRIVCIVLNKNVKFIPK
        +RG+R  LSL  SSS S  S  RP LLTL SEL LLLVA GESE L VLL  GPD TLY E+AG+ VI GRRLPG++RLISC  + + I   KNV  +  
Subjt:  MRGDRPPLSLPISSSISLASKQRPLLLTLISELALLLVARGESETLTVLLRDGPDRTLYIEEAGIFVINGRRLPGMLRLISC-SRIVCIVLNKNVKFIPK

Query:  LRCQKGKIEIPFHQKDPLKKDWMHTMCLIAISRDFLDSVLPKPELSGDEDFPDR
                         +  +++ T+C +AIS+DF +SVLPKP LSGD+DFPD+
Subjt:  LRCQKGKIEIPFHQKDPLKKDWMHTMCLIAISRDFLDSVLPKPELSGDEDFPDR

TrEMBL top hitse value%identityAlignment
A0A0D3EJF7 Uncharacterized protein2.1e-0860.87Show/hide
Query:  LASKQRPLLLTLISELALLLVARGESETLTVLLRDGPDRTLYIEEAGIFVINGRRLPGMLRLISCSRIV
        + SK   LLLTL SELALLLVARGESETL  LL   PDR L  E+AG+ VI GR+L GMLR ++ S ++
Subjt:  LASKQRPLLLTLISELALLLVARGESETLTVLLRDGPDRTLYIEEAGIFVINGRRLPGMLRLISCSRIV

A0A3Q7FMH8 Reverse transcriptase Ty1/copia-type domain-containing protein4.8e-2150.32Show/hide
Query:  MRGDRPPLSLPISSSISLASKQRPLLLTLISELALLLVARGESETLTVL----LRDGPDRTLYIEEAGIFVINGRRLPGMLRLISCSRIVCIVLNKNVKF
        + GDR PLSL +SSSISL S    LLLTL SELALLLVA GES TL  L    L  GPD TLYIE+AGI VI GRRLP  L LISC R +          
Subjt:  MRGDRPPLSLPISSSISLASKQRPLLLTLISELALLLVARGESETLTVL----LRDGPDRTLYIEEAGIFVINGRRLPGMLRLISCSRIVCIVLNKNVKF

Query:  IPKLRCQKGKIEIPFHQKDPLKKDWMHTMCLIAISRDFLDSVLPKPELSGDEDFPDR
                                  HT     IS+DF D+ LPKPELSGDEDF D+
Subjt:  IPKLRCQKGKIEIPFHQKDPLKKDWMHTMCLIAISRDFLDSVLPKPELSGDEDFPDR

A0A5N6QE22 Uncharacterized protein1.1e-2051.88Show/hide
Query:  PLLLTLISELALLLVARGESETLTVLLRDGPDRTLYIEEAGIFVINGRRLPGMLRLISCSRIVCIVLNKNVKFIPKLRCQKGKIEIPFHQKDPLKKDWMH
        PLL TLISELALLLVARGESETL  LLR GPD TLYIE+AGIFVING                                                   +H
Subjt:  PLLLTLISELALLLVARGESETLTVLLRDGPDRTLYIEEAGIFVINGRRLPGMLRLISCSRIVCIVLNKNVKFIPKLRCQKGKIEIPFHQKDPLKKDWMH

Query:  TMCLIAISRDFLDSVLPKPELSGDE-DFPDRFP
        T+CLIAISRDF +SVLPKPELSGDE DFP+R P
Subjt:  TMCLIAISRDFLDSVLPKPELSGDE-DFPDRFP

A0A7J0EDN2 Proline-rich family protein2.9e-1075.93Show/hide
Query:  SELALLLVARGESETLTVLLRDGPDRTLYIEEAGIFVINGRRLPGMLRLISCSR
        SELALLLVARGESE L V+L   PD TLY EEAG FVI G RLPGML LISCS+
Subjt:  SELALLLVARGESETLTVLLRDGPDRTLYIEEAGIFVINGRRLPGMLRLISCSR

A0A7N0RGQ2 Uncharacterized protein4.0e-2050Show/hide
Query:  MMRGDRPPLSLPISSSISLASKQRPLLLTLISELALLLVARGESETLTVLLRDG-----PDRTLYIEEAGIFVINGRRLPGMLRLISCSRIVCIVLNKNV
        M+ G R P SLP+SSSISL S+ R LLLTL SEL LLLVARGESETL VL R G     PDRTLYIE+AG+F                            
Subjt:  MMRGDRPPLSLPISSSISLASKQRPLLLTLISELALLLVARGESETLTVLLRDG-----PDRTLYIEEAGIFVINGRRLPGMLRLISCSRIVCIVLNKNV

Query:  KFIPKLRCQKGKIEIPFHQKDPLKKDWMHTMCLIAISRDFLDSVLPKPELSGDE-DFPDR
            KLR                      TMC IAISRDFLD VLPKPELSGDE DFP+R
Subjt:  KFIPKLRCQKGKIEIPFHQKDPLKKDWMHTMCLIAISRDFLDSVLPKPELSGDE-DFPDR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGCGGGGAGATCGACCTCCTCTCTCACTGCCAATTTCATCATCCATTTCACTTGCATCCAAACAGAGACCATTATTGTTGACACTCATTTCGGAACTAGCATTGCT
GCTCGTAGCAAGAGGTGAATCTGAAACACTAACAGTTCTGCTTCGGGATGGCCCAGATCGTACACTATACATTGAAGAAGCTGGAATATTTGTCATCAATGGGCGTAGAT
TACCTGGAATGCTTCGCCTTATATCCTGTTCAAGAATAGTTTGCATAGTGTTAAACAAGAATGTGAAGTTTATTCCAAAATTACGTTGTCAGAAAGGAAAGATAGAAATT
CCCTTCCACCAAAAAGATCCCCTGAAAAAAGATTGGATGCATACCATGTGTCTTATTGCCATATCAAGAGACTTCTTAGATAGTGTTCTCCCAAAGCCCGAGCTATCTGG
CGATGAAGACTTCCCAGACAGATTTCCATGA
mRNA sequenceShow/hide mRNA sequence
ATGATGCGGGGAGATCGACCTCCTCTCTCACTGCCAATTTCATCATCCATTTCACTTGCATCCAAACAGAGACCATTATTGTTGACACTCATTTCGGAACTAGCATTGCT
GCTCGTAGCAAGAGGTGAATCTGAAACACTAACAGTTCTGCTTCGGGATGGCCCAGATCGTACACTATACATTGAAGAAGCTGGAATATTTGTCATCAATGGGCGTAGAT
TACCTGGAATGCTTCGCCTTATATCCTGTTCAAGAATAGTTTGCATAGTGTTAAACAAGAATGTGAAGTTTATTCCAAAATTACGTTGTCAGAAAGGAAAGATAGAAATT
CCCTTCCACCAAAAAGATCCCCTGAAAAAAGATTGGATGCATACCATGTGTCTTATTGCCATATCAAGAGACTTCTTAGATAGTGTTCTCCCAAAGCCCGAGCTATCTGG
CGATGAAGACTTCCCAGACAGATTTCCATGA
Protein sequenceShow/hide protein sequence
MMRGDRPPLSLPISSSISLASKQRPLLLTLISELALLLVARGESETLTVLLRDGPDRTLYIEEAGIFVINGRRLPGMLRLISCSRIVCIVLNKNVKFIPKLRCQKGKIEI
PFHQKDPLKKDWMHTMCLIAISRDFLDSVLPKPELSGDEDFPDRFP