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MS024597 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS024597
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold185:641466..641946
RNA-Seq ExpressionMS024597
SyntenyMS024597
Gene Ontology termsGO:0044237 - cellular metabolic process (biological process)
GO:0016772 - transferase activity, transferring phosphorus-containing groups (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0057642.1 reverse transcriptase [Cucumis melo var. makuwa]2.5e-2342.66Show/hide
Query:  MFSVSLNGAFEGYFPGRRGLRQGEPLPPYVFVMAMEVLSRMLNRSSSGFQFHHKCDWVGISVLYPLLRIGLFWRVDGSCCEYSEELVFRTGLPNIEVEWL
        MFS+ +NG+ EG+F GR+G+RQG+PL  ++FVM MEVLSRMLN+    FQFHH+C+               F  + G      +  +F  G+ N     L
Subjt:  MFSVSLNGAFEGYFPGRRGLRQGEPLPPYVFVMAMEVLSRMLNRSSSGFQFHHKCDWVGISVLYPLLRIGLFWRVDGSCCEYSEELVFRTGLPNIEVEWL

Query:  VAFLDFLVGSLHMRYLGVSLLLHRLSHRDCQYLLERIVSRVRS
         A + F+ G+L +RYLG+ LL  RL   DC  L++RI SR+RS
Subjt:  VAFLDFLVGSLHMRYLGVSLLLHRLSHRDCQYLLERIVSRVRS

KAA0065355.1 F17F8.5 [Cucumis melo var. makuwa]1.1e-2339.13Show/hide
Query:  MFSVSLNGAFEGYFPGRRGLRQGEPLPPYVFVMAMEVLSRMLNRSSSGFQFHHKCDWVGISVLYPLLRIGLFWRVDGSCCEYSEEL--------------
        MFS+ +NG+FEG+F GR+G+RQG+PL P++FVM MEVLSRMLN+    FQFH +C+ V ++ L     + +F   D     +  E               
Subjt:  MFSVSLNGAFEGYFPGRRGLRQGEPLPPYVFVMAMEVLSRMLNRSSSGFQFHHKCDWVGISVLYPLLRIGLFWRVDGSCCEYSEEL--------------

Query:  ----VFRTGLPNIEVEWLVAFLDFLVGSLHMRYLGVSLLLHRLSHRDCQYLLERIVSRVRS
            +F   + N     L A + F+ G+L +RYLG+ LL+ RL   DC  L++R+ SR+RS
Subjt:  ----VFRTGLPNIEVEWLVAFLDFLVGSLHMRYLGVSLLLHRLSHRDCQYLLERIVSRVRS

TYK12108.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]2.5e-2339.75Show/hide
Query:  MFSVSLNGAFEGYFPGRRGLRQGEPLPPYVFVMAMEVLSRMLNRSSSGFQFHHKCDWVGISVL-------------YPLLR-----IGLFWRVDGSCCEY
        MFS+ +NG+ EG F GR+ +RQG PL P++FVM MEVLSRMLN+    FQFHH+C+ V ++ L              P +R     +  F  + G     
Subjt:  MFSVSLNGAFEGYFPGRRGLRQGEPLPPYVFVMAMEVLSRMLNRSSSGFQFHHKCDWVGISVL-------------YPLLR-----IGLFWRVDGSCCEY

Query:  SEELVFRTGLPNIEVEWLVAFLDFLVGSLHMRYLGVSLLLHRLSHRDCQYLLERIVSRVRS
         +  +F  G+ N     L A + F+ G+L +RYLG+ LL  RL   DC  +++RI SR+RS
Subjt:  SEELVFRTGLPNIEVEWLVAFLDFLVGSLHMRYLGVSLLLHRLSHRDCQYLLERIVSRVRS

XP_022157393.1 uncharacterized protein LOC111024102 [Momordica charantia]8.1e-3856.44Show/hide
Query:  MFSVSLNGAFEGYFPGRRGLRQGEPLPPYVFVMAMEVLSRMLNRSSSGFQFHHKCDWVGISVLYPLLRIGLFWR--------------------VDGSCC
        MF VSLNGA EGYFPG  GLRQG+PL PY+FVM ME+LSRMLNR  S F+FH KC+ VG++ L     + +F                      V G CC
Subjt:  MFSVSLNGAFEGYFPGRRGLRQGEPLPPYVFVMAMEVLSRMLNRSSSGFQFHHKCDWVGISVLYPLLRIGLFWR--------------------VDGSCC

Query:  EYSEELVFRTGLPNIEVEWLVAFLDFLVGSLHMRYLGVSLLLHRLSHRDCQYLLERIVSRVRS
        EYSE+  F  GLPN+EVE LVAFL F VG + +  LGV LL HRLSHRDCQ LL RIVSRV S
Subjt:  EYSEELVFRTGLPNIEVEWLVAFLDFLVGSLHMRYLGVSLLLHRLSHRDCQYLLERIVSRVRS

XP_038888122.1 uncharacterized protein LOC120078021 [Benincasa hispida]2.3e-2439.75Show/hide
Query:  MFSVSLNGAFEGYFPGRRGLRQGEPLPPYVFVMAMEVLSRMLNRSSSGFQFHHKCDWVGISVLYPLLRIGLFWRVDGSCCEYSEEL--------------
        MFS+ +NG+FEG+FPGR+GLRQG+PL  ++FVM +E+LSR+LN     F+FH +C+ VG++ L  +  + +F        E+  ++              
Subjt:  MFSVSLNGAFEGYFPGRRGLRQGEPLPPYVFVMAMEVLSRMLNRSSSGFQFHHKCDWVGISVLYPLLRIGLFWRVDGSCCEYSEEL--------------

Query:  ----VFRTGLPNIEVEWLVAFLDFLVGSLHMRYLGVSLLLHRLSHRDCQYLLERIVSRVRS
            +F  G+ + + E L AF+ F +GSL +RYLG+ LL  RL  RDC  L++RI +R+RS
Subjt:  ----VFRTGLPNIEVEWLVAFLDFLVGSLHMRYLGVSLLLHRLSHRDCQYLLERIVSRVRS

TrEMBL top hitse value%identityAlignment
A0A5A7U8G1 Non-LTR retroelement reverse transcriptase-like protein1.2e-2339.75Show/hide
Query:  MFSVSLNGAFEGYFPGRRGLRQGEPLPPYVFVMAMEVLSRMLNRSSSGFQFHHKCDWVGISVL-------------YPLLR-----IGLFWRVDGSCCEY
        MFS+ +NG+ EG F GR+ +RQG PL P++FVM MEVLSRMLN+    FQFHH+C+ V ++ L              P +R     +  F  + G     
Subjt:  MFSVSLNGAFEGYFPGRRGLRQGEPLPPYVFVMAMEVLSRMLNRSSSGFQFHHKCDWVGISVL-------------YPLLR-----IGLFWRVDGSCCEY

Query:  SEELVFRTGLPNIEVEWLVAFLDFLVGSLHMRYLGVSLLLHRLSHRDCQYLLERIVSRVRS
         +  +F  G+ N     L A + F+ G+L +RYLG+ LL  RL   DC  +++RI SR+RS
Subjt:  SEELVFRTGLPNIEVEWLVAFLDFLVGSLHMRYLGVSLLLHRLSHRDCQYLLERIVSRVRS

A0A5A7UP65 Reverse transcriptase1.2e-2342.66Show/hide
Query:  MFSVSLNGAFEGYFPGRRGLRQGEPLPPYVFVMAMEVLSRMLNRSSSGFQFHHKCDWVGISVLYPLLRIGLFWRVDGSCCEYSEELVFRTGLPNIEVEWL
        MFS+ +NG+ EG+F GR+G+RQG+PL  ++FVM MEVLSRMLN+    FQFHH+C+               F  + G      +  +F  G+ N     L
Subjt:  MFSVSLNGAFEGYFPGRRGLRQGEPLPPYVFVMAMEVLSRMLNRSSSGFQFHHKCDWVGISVLYPLLRIGLFWRVDGSCCEYSEELVFRTGLPNIEVEWL

Query:  VAFLDFLVGSLHMRYLGVSLLLHRLSHRDCQYLLERIVSRVRS
         A + F+ G+L +RYLG+ LL  RL   DC  L++RI SR+RS
Subjt:  VAFLDFLVGSLHMRYLGVSLLLHRLSHRDCQYLLERIVSRVRS

A0A5A7VHU9 F17F8.55.5e-2439.13Show/hide
Query:  MFSVSLNGAFEGYFPGRRGLRQGEPLPPYVFVMAMEVLSRMLNRSSSGFQFHHKCDWVGISVLYPLLRIGLFWRVDGSCCEYSEEL--------------
        MFS+ +NG+FEG+F GR+G+RQG+PL P++FVM MEVLSRMLN+    FQFH +C+ V ++ L     + +F   D     +  E               
Subjt:  MFSVSLNGAFEGYFPGRRGLRQGEPLPPYVFVMAMEVLSRMLNRSSSGFQFHHKCDWVGISVLYPLLRIGLFWRVDGSCCEYSEEL--------------

Query:  ----VFRTGLPNIEVEWLVAFLDFLVGSLHMRYLGVSLLLHRLSHRDCQYLLERIVSRVRS
            +F   + N     L A + F+ G+L +RYLG+ LL+ RL   DC  L++R+ SR+RS
Subjt:  ----VFRTGLPNIEVEWLVAFLDFLVGSLHMRYLGVSLLLHRLSHRDCQYLLERIVSRVRS

A0A5D3CLU1 Non-LTR retroelement reverse transcriptase-like protein1.2e-2339.75Show/hide
Query:  MFSVSLNGAFEGYFPGRRGLRQGEPLPPYVFVMAMEVLSRMLNRSSSGFQFHHKCDWVGISVL-------------YPLLR-----IGLFWRVDGSCCEY
        MFS+ +NG+ EG F GR+ +RQG PL P++FVM MEVLSRMLN+    FQFHH+C+ V ++ L              P +R     +  F  + G     
Subjt:  MFSVSLNGAFEGYFPGRRGLRQGEPLPPYVFVMAMEVLSRMLNRSSSGFQFHHKCDWVGISVL-------------YPLLR-----IGLFWRVDGSCCEY

Query:  SEELVFRTGLPNIEVEWLVAFLDFLVGSLHMRYLGVSLLLHRLSHRDCQYLLERIVSRVRS
         +  +F  G+ N     L A + F+ G+L +RYLG+ LL  RL   DC  +++RI SR+RS
Subjt:  SEELVFRTGLPNIEVEWLVAFLDFLVGSLHMRYLGVSLLLHRLSHRDCQYLLERIVSRVRS

A0A6J1DT89 uncharacterized protein LOC1110241023.9e-3856.44Show/hide
Query:  MFSVSLNGAFEGYFPGRRGLRQGEPLPPYVFVMAMEVLSRMLNRSSSGFQFHHKCDWVGISVLYPLLRIGLFWR--------------------VDGSCC
        MF VSLNGA EGYFPG  GLRQG+PL PY+FVM ME+LSRMLNR  S F+FH KC+ VG++ L     + +F                      V G CC
Subjt:  MFSVSLNGAFEGYFPGRRGLRQGEPLPPYVFVMAMEVLSRMLNRSSSGFQFHHKCDWVGISVLYPLLRIGLFWR--------------------VDGSCC

Query:  EYSEELVFRTGLPNIEVEWLVAFLDFLVGSLHMRYLGVSLLLHRLSHRDCQYLLERIVSRVRS
        EYSE+  F  GLPN+EVE LVAFL F VG + +  LGV LL HRLSHRDCQ LL RIVSRV S
Subjt:  EYSEELVFRTGLPNIEVEWLVAFLDFLVGSLHMRYLGVSLLLHRLSHRDCQYLLERIVSRVRS

SwissProt top hitse value%identityAlignment
P92555 Uncharacterized mitochondrial protein AtMg012501.6e-0450Show/hide
Query:  LNGAFEGYFPGRRGLRQGEPLPPYVFVMAMEVLSRMLNRS
        +NGA +G     RGLRQG+PL PY+F++  EVLS +  R+
Subjt:  LNGAFEGYFPGRRGLRQGEPLPPYVFVMAMEVLSRMLNRS

Arabidopsis top hitse value%identityAlignment
ATMG01250.1 RNA-directed DNA polymerase (reverse transcriptase)1.1e-0550Show/hide
Query:  LNGAFEGYFPGRRGLRQGEPLPPYVFVMAMEVLSRMLNRS
        +NGA +G     RGLRQG+PL PY+F++  EVLS +  R+
Subjt:  LNGAFEGYFPGRRGLRQGEPLPPYVFVMAMEVLSRMLNRS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCTCGGTTTCTTTGAATGGTGCGTTCGAGGGGTACTTTCCTGGACGTCGTGGATTACGTCAAGGGGAACCTCTGCCCCCATATGTTTTTGTTATGGCCATG
GAGGTGTTGTCTCGGATGCTGAATAGGTCGTCGTCGGGTTTCCAGTTTCATCACAAGTGTGATTGGGTTGGGATCTCGGTTCTTTATCCTTTATTAAGGATTGGC
CTCTTTTGGAGAGTTGACGGGTCTTGTTGTGAATACTCGGAAGAGCTCGTTTTTCGGACGGGTCTTCCTAATATTGAGGTGGAGTGGTTGGTGGCTTTCTTGGAC
TTTTTGGTGGGGTCGCTTCATATGCGTTATCTCGGGGTTTCGCTTCTTCTGCATCGGCTTTCTCATCGCGATTGTCAGTATTTGCTTGAGAGGATTGTCTCTCGT
GTTCGGAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTCTCGGTTTCTTTGAATGGTGCGTTCGAGGGGTACTTTCCTGGACGTCGTGGATTACGTCAAGGGGAACCTCTGCCCCCATATGTTTTTGTTATGGCCATG
GAGGTGTTGTCTCGGATGCTGAATAGGTCGTCGTCGGGTTTCCAGTTTCATCACAAGTGTGATTGGGTTGGGATCTCGGTTCTTTATCCTTTATTAAGGATTGGC
CTCTTTTGGAGAGTTGACGGGTCTTGTTGTGAATACTCGGAAGAGCTCGTTTTTCGGACGGGTCTTCCTAATATTGAGGTGGAGTGGTTGGTGGCTTTCTTGGAC
TTTTTGGTGGGGTCGCTTCATATGCGTTATCTCGGGGTTTCGCTTCTTCTGCATCGGCTTTCTCATCGCGATTGTCAGTATTTGCTTGAGAGGATTGTCTCTCGT
GTTCGGAGTTGA
Protein sequenceShow/hide protein sequence
MFSVSLNGAFEGYFPGRRGLRQGEPLPPYVFVMAMEVLSRMLNRSSSGFQFHHKCDWVGISVLYPLLRIGLFWRVDGSCCEYSEELVFRTGLPNIEVEWLVAFLD
FLVGSLHMRYLGVSLLLHRLSHRDCQYLLERIVSRVRS