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MS024600 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS024600
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionprotein PAF1 homolog
Genome locationscaffold185:707751..708422
RNA-Seq ExpressionMS024600
SyntenyMS024600
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022152366.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111020110 [Momordica charantia]9.5e-10289.52Show/hide
Query:  PSQAPTQPPMMGPHGYVNFQPLPTLNIPQNSEFRAANPQQLPPMINPGMYQPFMFNPVPSYHFPLSQMQIPASVHPYGMPNPSTLFPSLPPYYGMGHWVP
        PSQAPTQ P+M PHGYVNFQ LPT NIPQ+SEFRA NPQQLPPMINPGMYQPFMFN VPSYHFPLSQMQIPASVHPYGMPNPSTLFPSL PYYGMGHWVP
Subjt:  PSQAPTQPPMMGPHGYVNFQPLPTLNIPQNSEFRAANPQQLPPMINPGMYQPFMFNPVPSYHFPLSQMQIPASVHPYGMPNPSTLFPSLPPYYGMGHWVP

Query:  PQNYGMISPRVPPPPQLPFLERGPQAPQLNPNILSTFNMGQLKPLEPPMMPIPTNMPMDTGAEHGGEQEKSYSQRLEARVSIGQKRKGKEVMTDLEIEED
        P NYGMISPRVPPPPQL FLERGPQAPQLNPNILSTFNMGQLKPLEPP MP PTNMPMD G EHGGEQEKS+S RLE  V IGQKRKGKEVM D EIEED
Subjt:  PQNYGMISPRVPPPPQLPFLERGPQAPQLNPNILSTFNMGQLKPLEPPMMPIPTNMPMDTGAEHGGEQEKSYSQRLEARVSIGQKRKGKEVMTDLEIEED

Query:  GSSRRLTPKD
        GSSRRLTPKD
Subjt:  GSSRRLTPKD

XP_022156936.1 uncharacterized protein LOC111023763 [Momordica charantia]2.2e-9889.5Show/hide
Query:  MGPHGYVNFQPLPTLNIPQNSEFRAANPQQLPPMINPGMYQPFMFNPVPSYHFPLSQMQIPASVHPYGMPNPSTLFPSLPPYYGMGHWVPPQNYGMISPR
        M PHGYVNFQ LPTLNIPQNSEFRA NPQQLPPMINPGMYQPFMFN VPSYHFPLSQMQI ASVHPYGMPNPSTLFPS PPYYGMGHWVPP NYGMISPR
Subjt:  MGPHGYVNFQPLPTLNIPQNSEFRAANPQQLPPMINPGMYQPFMFNPVPSYHFPLSQMQIPASVHPYGMPNPSTLFPSLPPYYGMGHWVPPQNYGMISPR

Query:  VPPPPQLPFLERGPQAPQLNPNILSTFNMGQLKPLEPPMMPIPTNMPMDTGAEHGGEQEKSYSQRLEARVSIGQKRKGKEVMTDLEIEEDGSSRRLTPKD
        VPPPPQLPFLERGPQ PQLNPN LSTFNMG LKPLEPP MPIPTNMPMD G EHGGEQEKS+ QRLE  +SIGQKRKGKEVMTD EI EDGSSRRL PKD
Subjt:  VPPPPQLPFLERGPQAPQLNPNILSTFNMGQLKPLEPPMMPIPTNMPMDTGAEHGGEQEKSYSQRLEARVSIGQKRKGKEVMTDLEIEEDGSSRRLTPKD

XP_022157800.1 protein PAF1 homolog [Momordica charantia]4.6e-10489.52Show/hide
Query:  PSQAPTQPPMMGPHGYVNFQPLPTLNIPQNSEFRAANPQQLPPMINPGMYQPFMFNPVPSYHFPLSQMQIPASVHPYGMPNPSTLFPSLPPYYGMGHWVP
        PSQAPTQ PMM PHGYVNFQ LP LNIPQNSEFRA +PQQ PPMINPGMYQPF+FNPVP YHFPLSQMQIPASVHPYGMPNPSTLFPSLPPYY MG+WVP
Subjt:  PSQAPTQPPMMGPHGYVNFQPLPTLNIPQNSEFRAANPQQLPPMINPGMYQPFMFNPVPSYHFPLSQMQIPASVHPYGMPNPSTLFPSLPPYYGMGHWVP

Query:  PQNYGMISPRVPPPPQLPFLERGPQAPQLNPNILSTFNMGQLKPLEPPMMPIPTNMPMDTGAEHGGEQEKSYSQRLEARVSIGQKRKGKEVMTDLEIEED
        PQNYGMISPRVPPPPQLPFLERGPQAPQLNPNILSTFNMGQLKPLEPPMMPIP N+PMDTG EHGGEQEKS++QRLE  VSIGQKRKGKEV+TD E E+D
Subjt:  PQNYGMISPRVPPPPQLPFLERGPQAPQLNPNILSTFNMGQLKPLEPPMMPIPTNMPMDTGAEHGGEQEKSYSQRLEARVSIGQKRKGKEVMTDLEIEED

Query:  GSSRRLTPKD
        GSSRRLTPKD
Subjt:  GSSRRLTPKD

XP_022158357.1 uncharacterized protein LOC111024860 [Momordica charantia]1.7e-10676.69Show/hide
Query:  MASSSQHTSLPTS-------------------------------------------PSQAPTQPPMMGPHGYVNFQPLPTLNIPQNSEFRAANPQQLPPM
        MASSSQHTSLPTS                                           PSQAPTQ P+M PHGYVNFQ LPTLNIPQNSEFRA NPQQLPPM
Subjt:  MASSSQHTSLPTS-------------------------------------------PSQAPTQPPMMGPHGYVNFQPLPTLNIPQNSEFRAANPQQLPPM

Query:  INPGMYQPFMFNPVPSYHFPLSQMQIPASVHPYGMPNPSTLFPSLPPYYGMGHWVPPQNYGMISPRVPPPPQLPFLERGPQAPQLNPNILSTFNMGQLKP
        INPGMYQPFMFNPVPSYHFPLSQMQIPASVHPYGMPNPSTLFPSLPPYYGMGHW+PPQNYGMISP+VPPPPQLPFLERGPQAPQL+PNILST+NMGQLKP
Subjt:  INPGMYQPFMFNPVPSYHFPLSQMQIPASVHPYGMPNPSTLFPSLPPYYGMGHWVPPQNYGMISPRVPPPPQLPFLERGPQAPQLNPNILSTFNMGQLKP

Query:  LEPPMMPIPTNMPMDTGAEHGGEQEKSYSQRLEARVSIGQKRKGKEVMTDLEIEEDGSSRRLTPKD
        LEPP MP PTNMPMD G EHGGEQEK +S RLE  VSIGQKRKGKEVMTD EIEEDGSSRRLTPKD
Subjt:  LEPPMMPIPTNMPMDTGAEHGGEQEKSYSQRLEARVSIGQKRKGKEVMTDLEIEEDGSSRRLTPKD

XP_022158852.1 uncharacterized protein LOC111025316 [Momordica charantia]3.3e-10293Show/hide
Query:  MGPHGYVNFQPLPTLNIPQNSEFRAANPQQLPPMINPGMYQPFMFNPVPSYHFPLSQMQIPASVHPYGMPNPSTLFPSLPPYYGMGHWVPPQNYGMISPR
        M PHGYVNFQPLPTLNIPQNSEFRA +PQQLPPMINPGMYQPFMFNPVPSYHFPLSQMQIPASVHPYGMPNPSTLFPSLPPYYGMGHWVPP NYGMISPR
Subjt:  MGPHGYVNFQPLPTLNIPQNSEFRAANPQQLPPMINPGMYQPFMFNPVPSYHFPLSQMQIPASVHPYGMPNPSTLFPSLPPYYGMGHWVPPQNYGMISPR

Query:  VPPPPQLPFLERGPQAPQLNPNILSTFNMGQLKPLEPPMMPIPTNMPMDTGAEHGGEQEKSYSQRLEARVSIGQKRKGKEVMTDLEIEEDGSSRRLTPKD
        VPPPPQLPFLERGPQAPQLNPNILSTFNMG LKPLEP  M IPTNMPMDTG EHGGEQEKS+SQRLE  VSIGQKRKGKEVM+D EIEEDGSSRRLTPKD
Subjt:  VPPPPQLPFLERGPQAPQLNPNILSTFNMGQLKPLEPPMMPIPTNMPMDTGAEHGGEQEKSYSQRLEARVSIGQKRKGKEVMTDLEIEEDGSSRRLTPKD

TrEMBL top hitse value%identityAlignment
A0A6J1DHH9 LOW QUALITY PROTEIN: uncharacterized protein LOC1110201104.6e-10289.52Show/hide
Query:  PSQAPTQPPMMGPHGYVNFQPLPTLNIPQNSEFRAANPQQLPPMINPGMYQPFMFNPVPSYHFPLSQMQIPASVHPYGMPNPSTLFPSLPPYYGMGHWVP
        PSQAPTQ P+M PHGYVNFQ LPT NIPQ+SEFRA NPQQLPPMINPGMYQPFMFN VPSYHFPLSQMQIPASVHPYGMPNPSTLFPSL PYYGMGHWVP
Subjt:  PSQAPTQPPMMGPHGYVNFQPLPTLNIPQNSEFRAANPQQLPPMINPGMYQPFMFNPVPSYHFPLSQMQIPASVHPYGMPNPSTLFPSLPPYYGMGHWVP

Query:  PQNYGMISPRVPPPPQLPFLERGPQAPQLNPNILSTFNMGQLKPLEPPMMPIPTNMPMDTGAEHGGEQEKSYSQRLEARVSIGQKRKGKEVMTDLEIEED
        P NYGMISPRVPPPPQL FLERGPQAPQLNPNILSTFNMGQLKPLEPP MP PTNMPMD G EHGGEQEKS+S RLE  V IGQKRKGKEVM D EIEED
Subjt:  PQNYGMISPRVPPPPQLPFLERGPQAPQLNPNILSTFNMGQLKPLEPPMMPIPTNMPMDTGAEHGGEQEKSYSQRLEARVSIGQKRKGKEVMTDLEIEED

Query:  GSSRRLTPKD
        GSSRRLTPKD
Subjt:  GSSRRLTPKD

A0A6J1DU32 protein PAF1 homolog2.2e-10489.52Show/hide
Query:  PSQAPTQPPMMGPHGYVNFQPLPTLNIPQNSEFRAANPQQLPPMINPGMYQPFMFNPVPSYHFPLSQMQIPASVHPYGMPNPSTLFPSLPPYYGMGHWVP
        PSQAPTQ PMM PHGYVNFQ LP LNIPQNSEFRA +PQQ PPMINPGMYQPF+FNPVP YHFPLSQMQIPASVHPYGMPNPSTLFPSLPPYY MG+WVP
Subjt:  PSQAPTQPPMMGPHGYVNFQPLPTLNIPQNSEFRAANPQQLPPMINPGMYQPFMFNPVPSYHFPLSQMQIPASVHPYGMPNPSTLFPSLPPYYGMGHWVP

Query:  PQNYGMISPRVPPPPQLPFLERGPQAPQLNPNILSTFNMGQLKPLEPPMMPIPTNMPMDTGAEHGGEQEKSYSQRLEARVSIGQKRKGKEVMTDLEIEED
        PQNYGMISPRVPPPPQLPFLERGPQAPQLNPNILSTFNMGQLKPLEPPMMPIP N+PMDTG EHGGEQEKS++QRLE  VSIGQKRKGKEV+TD E E+D
Subjt:  PQNYGMISPRVPPPPQLPFLERGPQAPQLNPNILSTFNMGQLKPLEPPMMPIPTNMPMDTGAEHGGEQEKSYSQRLEARVSIGQKRKGKEVMTDLEIEED

Query:  GSSRRLTPKD
        GSSRRLTPKD
Subjt:  GSSRRLTPKD

A0A6J1DWG3 uncharacterized protein LOC1110237631.1e-9889.5Show/hide
Query:  MGPHGYVNFQPLPTLNIPQNSEFRAANPQQLPPMINPGMYQPFMFNPVPSYHFPLSQMQIPASVHPYGMPNPSTLFPSLPPYYGMGHWVPPQNYGMISPR
        M PHGYVNFQ LPTLNIPQNSEFRA NPQQLPPMINPGMYQPFMFN VPSYHFPLSQMQI ASVHPYGMPNPSTLFPS PPYYGMGHWVPP NYGMISPR
Subjt:  MGPHGYVNFQPLPTLNIPQNSEFRAANPQQLPPMINPGMYQPFMFNPVPSYHFPLSQMQIPASVHPYGMPNPSTLFPSLPPYYGMGHWVPPQNYGMISPR

Query:  VPPPPQLPFLERGPQAPQLNPNILSTFNMGQLKPLEPPMMPIPTNMPMDTGAEHGGEQEKSYSQRLEARVSIGQKRKGKEVMTDLEIEEDGSSRRLTPKD
        VPPPPQLPFLERGPQ PQLNPN LSTFNMG LKPLEPP MPIPTNMPMD G EHGGEQEKS+ QRLE  +SIGQKRKGKEVMTD EI EDGSSRRL PKD
Subjt:  VPPPPQLPFLERGPQAPQLNPNILSTFNMGQLKPLEPPMMPIPTNMPMDTGAEHGGEQEKSYSQRLEARVSIGQKRKGKEVMTDLEIEEDGSSRRLTPKD

A0A6J1DX11 uncharacterized protein LOC1110248608.1e-10776.69Show/hide
Query:  MASSSQHTSLPTS-------------------------------------------PSQAPTQPPMMGPHGYVNFQPLPTLNIPQNSEFRAANPQQLPPM
        MASSSQHTSLPTS                                           PSQAPTQ P+M PHGYVNFQ LPTLNIPQNSEFRA NPQQLPPM
Subjt:  MASSSQHTSLPTS-------------------------------------------PSQAPTQPPMMGPHGYVNFQPLPTLNIPQNSEFRAANPQQLPPM

Query:  INPGMYQPFMFNPVPSYHFPLSQMQIPASVHPYGMPNPSTLFPSLPPYYGMGHWVPPQNYGMISPRVPPPPQLPFLERGPQAPQLNPNILSTFNMGQLKP
        INPGMYQPFMFNPVPSYHFPLSQMQIPASVHPYGMPNPSTLFPSLPPYYGMGHW+PPQNYGMISP+VPPPPQLPFLERGPQAPQL+PNILST+NMGQLKP
Subjt:  INPGMYQPFMFNPVPSYHFPLSQMQIPASVHPYGMPNPSTLFPSLPPYYGMGHWVPPQNYGMISPRVPPPPQLPFLERGPQAPQLNPNILSTFNMGQLKP

Query:  LEPPMMPIPTNMPMDTGAEHGGEQEKSYSQRLEARVSIGQKRKGKEVMTDLEIEEDGSSRRLTPKD
        LEPP MP PTNMPMD G EHGGEQEK +S RLE  VSIGQKRKGKEVMTD EIEEDGSSRRLTPKD
Subjt:  LEPPMMPIPTNMPMDTGAEHGGEQEKSYSQRLEARVSIGQKRKGKEVMTDLEIEEDGSSRRLTPKD

A0A6J1DY94 uncharacterized protein LOC1110253161.6e-10293Show/hide
Query:  MGPHGYVNFQPLPTLNIPQNSEFRAANPQQLPPMINPGMYQPFMFNPVPSYHFPLSQMQIPASVHPYGMPNPSTLFPSLPPYYGMGHWVPPQNYGMISPR
        M PHGYVNFQPLPTLNIPQNSEFRA +PQQLPPMINPGMYQPFMFNPVPSYHFPLSQMQIPASVHPYGMPNPSTLFPSLPPYYGMGHWVPP NYGMISPR
Subjt:  MGPHGYVNFQPLPTLNIPQNSEFRAANPQQLPPMINPGMYQPFMFNPVPSYHFPLSQMQIPASVHPYGMPNPSTLFPSLPPYYGMGHWVPPQNYGMISPR

Query:  VPPPPQLPFLERGPQAPQLNPNILSTFNMGQLKPLEPPMMPIPTNMPMDTGAEHGGEQEKSYSQRLEARVSIGQKRKGKEVMTDLEIEEDGSSRRLTPKD
        VPPPPQLPFLERGPQAPQLNPNILSTFNMG LKPLEP  M IPTNMPMDTG EHGGEQEKS+SQRLE  VSIGQKRKGKEVM+D EIEEDGSSRRLTPKD
Subjt:  VPPPPQLPFLERGPQAPQLNPNILSTFNMGQLKPLEPPMMPIPTNMPMDTGAEHGGEQEKSYSQRLEARVSIGQKRKGKEVMTDLEIEEDGSSRRLTPKD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCTTCTTCTCAACACACTTCACTCCCTACTTCTCCTTCCCAAGCTCCTACACAACCTCCTATGATGGGTCCACATGGTTATGTAAATTTTCAGCCGCTA
CCCACCCTTAATATACCTCAAAACAGTGAATTTAGGGCTGCAAATCCTCAACAACTTCCTCCAATGATCAATCCGGGTATGTACCAACCGTTTATGTTTAACCCG
GTTCCTTCCTATCATTTTCCCTTGTCCCAAATGCAAATTCCAGCTAGTGTTCATCCTTATGGAATGCCCAACCCATCTACTCTATTTCCTAGCCTTCCACCTTAT
TATGGAATGGGTCATTGGGTACCTCCACAAAATTATGGGATGATTTCACCTAGGGTTCCCCCACCACCTCAACTTCCATTCCTAGAAAGAGGACCTCAAGCACCC
CAATTGAACCCTAACATATTGAGTACCTTCAACATGGGACAACTAAAACCCTTAGAGCCTCCTATGATGCCAATCCCAACCAATATGCCAATGGATACAGGAGCT
GAGCATGGAGGAGAGCAAGAGAAGAGCTATAGCCAAAGGCTAGAGGCCAGGGTCTCGATCGGGCAAAAGAGGAAGGGCAAGGAGGTGATGACGGACCTAGAAATT
GAGGAAGATGGGAGTAGTAGGCGTCTGACGCCTAAGGATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCTTCTTCTCAACACACTTCACTCCCTACTTCTCCTTCCCAAGCTCCTACACAACCTCCTATGATGGGTCCACATGGTTATGTAAATTTTCAGCCGCTA
CCCACCCTTAATATACCTCAAAACAGTGAATTTAGGGCTGCAAATCCTCAACAACTTCCTCCAATGATCAATCCGGGTATGTACCAACCGTTTATGTTTAACCCG
GTTCCTTCCTATCATTTTCCCTTGTCCCAAATGCAAATTCCAGCTAGTGTTCATCCTTATGGAATGCCCAACCCATCTACTCTATTTCCTAGCCTTCCACCTTAT
TATGGAATGGGTCATTGGGTACCTCCACAAAATTATGGGATGATTTCACCTAGGGTTCCCCCACCACCTCAACTTCCATTCCTAGAAAGAGGACCTCAAGCACCC
CAATTGAACCCTAACATATTGAGTACCTTCAACATGGGACAACTAAAACCCTTAGAGCCTCCTATGATGCCAATCCCAACCAATATGCCAATGGATACAGGAGCT
GAGCATGGAGGAGAGCAAGAGAAGAGCTATAGCCAAAGGCTAGAGGCCAGGGTCTCGATCGGGCAAAAGAGGAAGGGCAAGGAGGTGATGACGGACCTAGAAATT
GAGGAAGATGGGAGTAGTAGGCGTCTGACGCCTAAGGATTAA
Protein sequenceShow/hide protein sequence
MASSSQHTSLPTSPSQAPTQPPMMGPHGYVNFQPLPTLNIPQNSEFRAANPQQLPPMINPGMYQPFMFNPVPSYHFPLSQMQIPASVHPYGMPNPSTLFPSLPPY
YGMGHWVPPQNYGMISPRVPPPPQLPFLERGPQAPQLNPNILSTFNMGQLKPLEPPMMPIPTNMPMDTGAEHGGEQEKSYSQRLEARVSIGQKRKGKEVMTDLEI
EEDGSSRRLTPKD