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MS024628 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS024628
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionAuxin-responsive protein
Genome locationscaffold127:536389..536643
RNA-Seq ExpressionMS024628
SyntenyMS024628
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0009734 - auxin-activated signaling pathway (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6587938.1 Auxin-induced protein AUX22, partial [Cucurbita argyrosperma subsp. sororia]7.2e-1867.69Show/hide
Query:  SETAPQSPESDLTHVNFDETELTLGLPGAEFRPAEGNKVYHRPNAAKRGFHDTIDSSVGSSTSEQ
        +ET P+SPESDLTH+NFDETELTLGLPGAEFRP + NKVYH+PNA +R FH+  D+  G+ST ++
Subjt:  SETAPQSPESDLTHVNFDETELTLGLPGAEFRPAEGNKVYHRPNAAKRGFHDTIDSSVGSSTSEQ

XP_022145003.1 auxin-responsive protein IAA16-like isoform X1 [Momordica charantia]1.8e-3797.59Show/hide
Query:  MPSETAPQSPESDLTHVNFDETELTLGLPGAEFRPAEGNKVYHRPNAAKRGFHDTIDSSVGSSTSEQCGSCDKAKLISSADGK
        MPSETAPQSPESDLTHVNFDETELTLGLPGAEFRPAEGNKVYHRPNAAKRGFHDTIDSSVGSS SEQCGSCDKAKLISSADG+
Subjt:  MPSETAPQSPESDLTHVNFDETELTLGLPGAEFRPAEGNKVYHRPNAAKRGFHDTIDSSVGSSTSEQCGSCDKAKLISSADGK

XP_022145004.1 auxin-responsive protein IAA4-like isoform X2 [Momordica charantia]1.8e-3797.59Show/hide
Query:  MPSETAPQSPESDLTHVNFDETELTLGLPGAEFRPAEGNKVYHRPNAAKRGFHDTIDSSVGSSTSEQCGSCDKAKLISSADGK
        MPSETAPQSPESDLTHVNFDETELTLGLPGAEFRPAEGNKVYHRPNAAKRGFHDTIDSSVGSS SEQCGSCDKAKLISSADG+
Subjt:  MPSETAPQSPESDLTHVNFDETELTLGLPGAEFRPAEGNKVYHRPNAAKRGFHDTIDSSVGSSTSEQCGSCDKAKLISSADGK

XP_022932835.1 auxin-responsive protein IAA1-like isoform X1 [Cucurbita moschata]7.2e-1867.69Show/hide
Query:  SETAPQSPESDLTHVNFDETELTLGLPGAEFRPAEGNKVYHRPNAAKRGFHDTIDSSVGSSTSEQ
        +ET P+SPESDLTH+NFDETELTLGLPGAEFRP + NKVYH+PNA +R FH+  D+  G+ST ++
Subjt:  SETAPQSPESDLTHVNFDETELTLGLPGAEFRPAEGNKVYHRPNAAKRGFHDTIDSSVGSSTSEQ

XP_022932838.1 auxin-responsive protein IAA1-like isoform X2 [Cucurbita moschata]7.2e-1867.69Show/hide
Query:  SETAPQSPESDLTHVNFDETELTLGLPGAEFRPAEGNKVYHRPNAAKRGFHDTIDSSVGSSTSEQ
        +ET P+SPESDLTH+NFDETELTLGLPGAEFRP + NKVYH+PNA +R FH+  D+  G+ST ++
Subjt:  SETAPQSPESDLTHVNFDETELTLGLPGAEFRPAEGNKVYHRPNAAKRGFHDTIDSSVGSSTSEQ

TrEMBL top hitse value%identityAlignment
A0A6J1CTX7 Auxin-responsive protein8.8e-3897.59Show/hide
Query:  MPSETAPQSPESDLTHVNFDETELTLGLPGAEFRPAEGNKVYHRPNAAKRGFHDTIDSSVGSSTSEQCGSCDKAKLISSADGK
        MPSETAPQSPESDLTHVNFDETELTLGLPGAEFRPAEGNKVYHRPNAAKRGFHDTIDSSVGSS SEQCGSCDKAKLISSADG+
Subjt:  MPSETAPQSPESDLTHVNFDETELTLGLPGAEFRPAEGNKVYHRPNAAKRGFHDTIDSSVGSSTSEQCGSCDKAKLISSADGK

A0A6J1CUS1 Auxin-responsive protein8.8e-3897.59Show/hide
Query:  MPSETAPQSPESDLTHVNFDETELTLGLPGAEFRPAEGNKVYHRPNAAKRGFHDTIDSSVGSSTSEQCGSCDKAKLISSADGK
        MPSETAPQSPESDLTHVNFDETELTLGLPGAEFRPAEGNKVYHRPNAAKRGFHDTIDSSVGSS SEQCGSCDKAKLISSADG+
Subjt:  MPSETAPQSPESDLTHVNFDETELTLGLPGAEFRPAEGNKVYHRPNAAKRGFHDTIDSSVGSSTSEQCGSCDKAKLISSADGK

A0A6J1F2V8 Auxin-responsive protein3.5e-1867.69Show/hide
Query:  SETAPQSPESDLTHVNFDETELTLGLPGAEFRPAEGNKVYHRPNAAKRGFHDTIDSSVGSSTSEQ
        +ET P+SPESDLTH+NFDETELTLGLPGAEFRP + NKVYH+PNA +R FH+  D+  G+ST ++
Subjt:  SETAPQSPESDLTHVNFDETELTLGLPGAEFRPAEGNKVYHRPNAAKRGFHDTIDSSVGSSTSEQ

A0A6J1F375 Auxin-responsive protein3.5e-1867.69Show/hide
Query:  SETAPQSPESDLTHVNFDETELTLGLPGAEFRPAEGNKVYHRPNAAKRGFHDTIDSSVGSSTSEQ
        +ET P+SPESDLTH+NFDETELTLGLPGAEFRP + NKVYH+PNA +R FH+  D+  G+ST ++
Subjt:  SETAPQSPESDLTHVNFDETELTLGLPGAEFRPAEGNKVYHRPNAAKRGFHDTIDSSVGSSTSEQ

A0A6J1KGU6 Auxin-responsive protein3.5e-1867.69Show/hide
Query:  SETAPQSPESDLTHVNFDETELTLGLPGAEFRPAEGNKVYHRPNAAKRGFHDTIDSSVGSSTSEQ
        +ET  +SPESDLTH+NFDETELTLGLPGAEFRP + NKVYH+PNA +R FHD +D+  G+ST ++
Subjt:  SETAPQSPESDLTHVNFDETELTLGLPGAEFRPAEGNKVYHRPNAAKRGFHDTIDSSVGSSTSEQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCGTCGGAAACCGCCCCACAGTCACCGGAATCTGATTTGACCCACGTCAATTTCGATGAAACAGAGCTCACCTTGGGCCTTCCGGGCGCCGAGTTCCGGCCAGCGGA
GGGGAACAAAGTATATCACAGACCCAACGCAGCCAAACGTGGCTTCCATGACACCATTGATTCCAGCGTCGGGAGCTCGACAAGTGAGCAGTGTGGCAGTTGCGACAAGG
CGAAACTCATCTCCTCCGCCGATGGTAAAGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCGTCGGAAACCGCCCCACAGTCACCGGAATCTGATTTGACCCACGTCAATTTCGATGAAACAGAGCTCACCTTGGGCCTTCCGGGCGCCGAGTTCCGGCCAGCGGA
GGGGAACAAAGTATATCACAGACCCAACGCAGCCAAACGTGGCTTCCATGACACCATTGATTCCAGCGTCGGGAGCTCGACAAGTGAGCAGTGTGGCAGTTGCGACAAGG
CGAAACTCATCTCCTCCGCCGATGGTAAAGTTTAA
Protein sequenceShow/hide protein sequence
MPSETAPQSPESDLTHVNFDETELTLGLPGAEFRPAEGNKVYHRPNAAKRGFHDTIDSSVGSSTSEQCGSCDKAKLISSADGKV