; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS024652 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS024652
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionprotein PAF1 homolog
Genome locationscaffold543:349552..350426
RNA-Seq ExpressionMS024652
SyntenyMS024652
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022152366.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111020110 [Momordica charantia]9.3e-11791.42Show/hide
Query:  PSHAPTQPPMMRPHGYVNFQQLPTLNIPQNSEFRATNPQQLPPMINPGMYQPFMFYPVPSYHFPLSQMQIPASVHPYGMPNPSTLFPSLPPYYGMGHWVP
        PS APTQ P+M PHGYVNFQQLPT NIPQ+SEFRA NPQQLPPMINPGMYQPFMF  VPSYHFPLSQMQIPASVHPYGMPNPSTLFPSL PYYGMGHWVP
Subjt:  PSHAPTQPPMMRPHGYVNFQQLPTLNIPQNSEFRATNPQQLPPMINPGMYQPFMFYPVPSYHFPLSQMQIPASVHPYGMPNPSTLFPSLPPYYGMGHWVP

Query:  PQNYGMISPRVPPPPQLPFLERGPQAPQLNPNILSTFNMGQLKPLEPPRMPIPTNMPMDTGVEHGGEQEKSHSQRLEPGVSIGQKRKGKEVMTDPEIEED
        P NYGMISPRVPPPPQL FLERGPQAPQLNPNILSTFNMGQLKPLEPPRMP PTNMPMD G EHGGEQEKSHS RLEPGV IGQKRKGKEVM DPEIEED
Subjt:  PQNYGMISPRVPPPPQLPFLERGPQAPQLNPNILSTFNMGQLKPLEPPRMPIPTNMPMDTGVEHGGEQEKSHSQRLEPGVSIGQKRKGKEVMTDPEIEED

Query:  GSSRRLTPKDSSMENRDEEQFYSSPLIITPGDG
        GSSRRLTPKDSSMENRDEEQFYSSPLIIT  DG
Subjt:  GSSRRLTPKDSSMENRDEEQFYSSPLIITPGDG

XP_022156936.1 uncharacterized protein LOC111023763 [Momordica charantia]1.5e-11492.38Show/hide
Query:  MRPHGYVNFQQLPTLNIPQNSEFRATNPQQLPPMINPGMYQPFMFYPVPSYHFPLSQMQIPASVHPYGMPNPSTLFPSLPPYYGMGHWVPPQNYGMISPR
        M PHGYVNFQQLPTLNIPQNSEFRA NPQQLPPMINPGMYQPFMF  VPSYHFPLSQMQI ASVHPYGMPNPSTLFPS PPYYGMGHWVPP NYGMISPR
Subjt:  MRPHGYVNFQQLPTLNIPQNSEFRATNPQQLPPMINPGMYQPFMFYPVPSYHFPLSQMQIPASVHPYGMPNPSTLFPSLPPYYGMGHWVPPQNYGMISPR

Query:  VPPPPQLPFLERGPQAPQLNPNILSTFNMGQLKPLEPPRMPIPTNMPMDTGVEHGGEQEKSHSQRLEPGVSIGQKRKGKEVMTDPEIEEDGSSRRLTPKD
        VPPPPQLPFLERGPQ PQLNPN LSTFNMG LKPLEPPRMPIPTNMPMD GVEHGGEQEKSH QRLEP +SIGQKRKGKEVMTDPEI EDGSSRRL PKD
Subjt:  VPPPPQLPFLERGPQAPQLNPNILSTFNMGQLKPLEPPRMPIPTNMPMDTGVEHGGEQEKSHSQRLEPGVSIGQKRKGKEVMTDPEIEEDGSSRRLTPKD

Query:  SSMENRDEEQFYSSPLIITPGDG
        SSME RDEEQFYSSPLIITPGDG
Subjt:  SSMENRDEEQFYSSPLIITPGDG

XP_022157800.1 protein PAF1 homolog [Momordica charantia]1.3e-11890.99Show/hide
Query:  PSHAPTQPPMMRPHGYVNFQQLPTLNIPQNSEFRATNPQQLPPMINPGMYQPFMFYPVPSYHFPLSQMQIPASVHPYGMPNPSTLFPSLPPYYGMGHWVP
        PS APTQ PMM PHGYVNFQQLP LNIPQNSEFRA +PQQ PPMINPGMYQPF+F PVP YHFPLSQMQIPASVHPYGMPNPSTLFPSLPPYY MG+WVP
Subjt:  PSHAPTQPPMMRPHGYVNFQQLPTLNIPQNSEFRATNPQQLPPMINPGMYQPFMFYPVPSYHFPLSQMQIPASVHPYGMPNPSTLFPSLPPYYGMGHWVP

Query:  PQNYGMISPRVPPPPQLPFLERGPQAPQLNPNILSTFNMGQLKPLEPPRMPIPTNMPMDTGVEHGGEQEKSHSQRLEPGVSIGQKRKGKEVMTDPEIEED
        PQNYGMISPRVPPPPQLPFLERGPQAPQLNPNILSTFNMGQLKPLEPP MPIP N+PMDTGVEHGGEQEKSH+QRLEP VSIGQKRKGKEV+TDPE E+D
Subjt:  PQNYGMISPRVPPPPQLPFLERGPQAPQLNPNILSTFNMGQLKPLEPPRMPIPTNMPMDTGVEHGGEQEKSHSQRLEPGVSIGQKRKGKEVMTDPEIEED

Query:  GSSRRLTPKDSSMENRDEEQFYSSPLIITPGDG
        GSSRRLTPKDS+MENRDEEQFYSSPLIITPGDG
Subjt:  GSSRRLTPKDSSMENRDEEQFYSSPLIITPGDG

XP_022158357.1 uncharacterized protein LOC111024860 [Momordica charantia]8.2e-12178.55Show/hide
Query:  MASSSQHTSLPTS-------------------------------------------PSHAPTQPPMMRPHGYVNFQQLPTLNIPQNSEFRATNPQQLPPM
        MASSSQHTSLPTS                                           PS APTQ P+M PHGYVNFQQLPTLNIPQNSEFRA NPQQLPPM
Subjt:  MASSSQHTSLPTS-------------------------------------------PSHAPTQPPMMRPHGYVNFQQLPTLNIPQNSEFRATNPQQLPPM

Query:  INPGMYQPFMFYPVPSYHFPLSQMQIPASVHPYGMPNPSTLFPSLPPYYGMGHWVPPQNYGMISPRVPPPPQLPFLERGPQAPQLNPNILSTFNMGQLKP
        INPGMYQPFMF PVPSYHFPLSQMQIPASVHPYGMPNPSTLFPSLPPYYGMGHW+PPQNYGMISP+VPPPPQLPFLERGPQAPQL+PNILST+NMGQLKP
Subjt:  INPGMYQPFMFYPVPSYHFPLSQMQIPASVHPYGMPNPSTLFPSLPPYYGMGHWVPPQNYGMISPRVPPPPQLPFLERGPQAPQLNPNILSTFNMGQLKP

Query:  LEPPRMPIPTNMPMDTGVEHGGEQEKSHSQRLEPGVSIGQKRKGKEVMTDPEIEEDGSSRRLTPKDSSMENRDEEQFYSSPLIITPGDG
        LEPPRMP PTNMPMD G EHGGEQEK HS RLEPGVSIGQKRKGKEVMTDPEIEEDGSSRRLTPKDS+MENRDEEQFYSS  IITP DG
Subjt:  LEPPRMPIPTNMPMDTGVEHGGEQEKSHSQRLEPGVSIGQKRKGKEVMTDPEIEEDGSSRRLTPKDSSMENRDEEQFYSSPLIITPGDG

XP_022158852.1 uncharacterized protein LOC111025316 [Momordica charantia]4.9e-11895.07Show/hide
Query:  MRPHGYVNFQQLPTLNIPQNSEFRATNPQQLPPMINPGMYQPFMFYPVPSYHFPLSQMQIPASVHPYGMPNPSTLFPSLPPYYGMGHWVPPQNYGMISPR
        M PHGYVNFQ LPTLNIPQNSEFRA +PQQLPPMINPGMYQPFMF PVPSYHFPLSQMQIPASVHPYGMPNPSTLFPSLPPYYGMGHWVPP NYGMISPR
Subjt:  MRPHGYVNFQQLPTLNIPQNSEFRATNPQQLPPMINPGMYQPFMFYPVPSYHFPLSQMQIPASVHPYGMPNPSTLFPSLPPYYGMGHWVPPQNYGMISPR

Query:  VPPPPQLPFLERGPQAPQLNPNILSTFNMGQLKPLEPPRMPIPTNMPMDTGVEHGGEQEKSHSQRLEPGVSIGQKRKGKEVMTDPEIEEDGSSRRLTPKD
        VPPPPQLPFLERGPQAPQLNPNILSTFNMG LKPLEP RM IPTNMPMDTG EHGGEQEKSHSQRLEPGVSIGQKRKGKEVM+DPEIEEDGSSRRLTPKD
Subjt:  VPPPPQLPFLERGPQAPQLNPNILSTFNMGQLKPLEPPRMPIPTNMPMDTGVEHGGEQEKSHSQRLEPGVSIGQKRKGKEVMTDPEIEEDGSSRRLTPKD

Query:  SSMENRDEEQFYSSPLIITPGDG
        SSMENRDEEQFYSSPLIITPGDG
Subjt:  SSMENRDEEQFYSSPLIITPGDG

TrEMBL top hitse value%identityAlignment
A0A6J1DHH9 LOW QUALITY PROTEIN: uncharacterized protein LOC1110201104.5e-11791.42Show/hide
Query:  PSHAPTQPPMMRPHGYVNFQQLPTLNIPQNSEFRATNPQQLPPMINPGMYQPFMFYPVPSYHFPLSQMQIPASVHPYGMPNPSTLFPSLPPYYGMGHWVP
        PS APTQ P+M PHGYVNFQQLPT NIPQ+SEFRA NPQQLPPMINPGMYQPFMF  VPSYHFPLSQMQIPASVHPYGMPNPSTLFPSL PYYGMGHWVP
Subjt:  PSHAPTQPPMMRPHGYVNFQQLPTLNIPQNSEFRATNPQQLPPMINPGMYQPFMFYPVPSYHFPLSQMQIPASVHPYGMPNPSTLFPSLPPYYGMGHWVP

Query:  PQNYGMISPRVPPPPQLPFLERGPQAPQLNPNILSTFNMGQLKPLEPPRMPIPTNMPMDTGVEHGGEQEKSHSQRLEPGVSIGQKRKGKEVMTDPEIEED
        P NYGMISPRVPPPPQL FLERGPQAPQLNPNILSTFNMGQLKPLEPPRMP PTNMPMD G EHGGEQEKSHS RLEPGV IGQKRKGKEVM DPEIEED
Subjt:  PQNYGMISPRVPPPPQLPFLERGPQAPQLNPNILSTFNMGQLKPLEPPRMPIPTNMPMDTGVEHGGEQEKSHSQRLEPGVSIGQKRKGKEVMTDPEIEED

Query:  GSSRRLTPKDSSMENRDEEQFYSSPLIITPGDG
        GSSRRLTPKDSSMENRDEEQFYSSPLIIT  DG
Subjt:  GSSRRLTPKDSSMENRDEEQFYSSPLIITPGDG

A0A6J1DU32 protein PAF1 homolog6.3e-11990.99Show/hide
Query:  PSHAPTQPPMMRPHGYVNFQQLPTLNIPQNSEFRATNPQQLPPMINPGMYQPFMFYPVPSYHFPLSQMQIPASVHPYGMPNPSTLFPSLPPYYGMGHWVP
        PS APTQ PMM PHGYVNFQQLP LNIPQNSEFRA +PQQ PPMINPGMYQPF+F PVP YHFPLSQMQIPASVHPYGMPNPSTLFPSLPPYY MG+WVP
Subjt:  PSHAPTQPPMMRPHGYVNFQQLPTLNIPQNSEFRATNPQQLPPMINPGMYQPFMFYPVPSYHFPLSQMQIPASVHPYGMPNPSTLFPSLPPYYGMGHWVP

Query:  PQNYGMISPRVPPPPQLPFLERGPQAPQLNPNILSTFNMGQLKPLEPPRMPIPTNMPMDTGVEHGGEQEKSHSQRLEPGVSIGQKRKGKEVMTDPEIEED
        PQNYGMISPRVPPPPQLPFLERGPQAPQLNPNILSTFNMGQLKPLEPP MPIP N+PMDTGVEHGGEQEKSH+QRLEP VSIGQKRKGKEV+TDPE E+D
Subjt:  PQNYGMISPRVPPPPQLPFLERGPQAPQLNPNILSTFNMGQLKPLEPPRMPIPTNMPMDTGVEHGGEQEKSHSQRLEPGVSIGQKRKGKEVMTDPEIEED

Query:  GSSRRLTPKDSSMENRDEEQFYSSPLIITPGDG
        GSSRRLTPKDS+MENRDEEQFYSSPLIITPGDG
Subjt:  GSSRRLTPKDSSMENRDEEQFYSSPLIITPGDG

A0A6J1DWG3 uncharacterized protein LOC1110237637.2e-11592.38Show/hide
Query:  MRPHGYVNFQQLPTLNIPQNSEFRATNPQQLPPMINPGMYQPFMFYPVPSYHFPLSQMQIPASVHPYGMPNPSTLFPSLPPYYGMGHWVPPQNYGMISPR
        M PHGYVNFQQLPTLNIPQNSEFRA NPQQLPPMINPGMYQPFMF  VPSYHFPLSQMQI ASVHPYGMPNPSTLFPS PPYYGMGHWVPP NYGMISPR
Subjt:  MRPHGYVNFQQLPTLNIPQNSEFRATNPQQLPPMINPGMYQPFMFYPVPSYHFPLSQMQIPASVHPYGMPNPSTLFPSLPPYYGMGHWVPPQNYGMISPR

Query:  VPPPPQLPFLERGPQAPQLNPNILSTFNMGQLKPLEPPRMPIPTNMPMDTGVEHGGEQEKSHSQRLEPGVSIGQKRKGKEVMTDPEIEEDGSSRRLTPKD
        VPPPPQLPFLERGPQ PQLNPN LSTFNMG LKPLEPPRMPIPTNMPMD GVEHGGEQEKSH QRLEP +SIGQKRKGKEVMTDPEI EDGSSRRL PKD
Subjt:  VPPPPQLPFLERGPQAPQLNPNILSTFNMGQLKPLEPPRMPIPTNMPMDTGVEHGGEQEKSHSQRLEPGVSIGQKRKGKEVMTDPEIEEDGSSRRLTPKD

Query:  SSMENRDEEQFYSSPLIITPGDG
        SSME RDEEQFYSSPLIITPGDG
Subjt:  SSMENRDEEQFYSSPLIITPGDG

A0A6J1DX11 uncharacterized protein LOC1110248603.9e-12178.55Show/hide
Query:  MASSSQHTSLPTS-------------------------------------------PSHAPTQPPMMRPHGYVNFQQLPTLNIPQNSEFRATNPQQLPPM
        MASSSQHTSLPTS                                           PS APTQ P+M PHGYVNFQQLPTLNIPQNSEFRA NPQQLPPM
Subjt:  MASSSQHTSLPTS-------------------------------------------PSHAPTQPPMMRPHGYVNFQQLPTLNIPQNSEFRATNPQQLPPM

Query:  INPGMYQPFMFYPVPSYHFPLSQMQIPASVHPYGMPNPSTLFPSLPPYYGMGHWVPPQNYGMISPRVPPPPQLPFLERGPQAPQLNPNILSTFNMGQLKP
        INPGMYQPFMF PVPSYHFPLSQMQIPASVHPYGMPNPSTLFPSLPPYYGMGHW+PPQNYGMISP+VPPPPQLPFLERGPQAPQL+PNILST+NMGQLKP
Subjt:  INPGMYQPFMFYPVPSYHFPLSQMQIPASVHPYGMPNPSTLFPSLPPYYGMGHWVPPQNYGMISPRVPPPPQLPFLERGPQAPQLNPNILSTFNMGQLKP

Query:  LEPPRMPIPTNMPMDTGVEHGGEQEKSHSQRLEPGVSIGQKRKGKEVMTDPEIEEDGSSRRLTPKDSSMENRDEEQFYSSPLIITPGDG
        LEPPRMP PTNMPMD G EHGGEQEK HS RLEPGVSIGQKRKGKEVMTDPEIEEDGSSRRLTPKDS+MENRDEEQFYSS  IITP DG
Subjt:  LEPPRMPIPTNMPMDTGVEHGGEQEKSHSQRLEPGVSIGQKRKGKEVMTDPEIEEDGSSRRLTPKDSSMENRDEEQFYSSPLIITPGDG

A0A6J1DY94 uncharacterized protein LOC1110253162.4e-11895.07Show/hide
Query:  MRPHGYVNFQQLPTLNIPQNSEFRATNPQQLPPMINPGMYQPFMFYPVPSYHFPLSQMQIPASVHPYGMPNPSTLFPSLPPYYGMGHWVPPQNYGMISPR
        M PHGYVNFQ LPTLNIPQNSEFRA +PQQLPPMINPGMYQPFMF PVPSYHFPLSQMQIPASVHPYGMPNPSTLFPSLPPYYGMGHWVPP NYGMISPR
Subjt:  MRPHGYVNFQQLPTLNIPQNSEFRATNPQQLPPMINPGMYQPFMFYPVPSYHFPLSQMQIPASVHPYGMPNPSTLFPSLPPYYGMGHWVPPQNYGMISPR

Query:  VPPPPQLPFLERGPQAPQLNPNILSTFNMGQLKPLEPPRMPIPTNMPMDTGVEHGGEQEKSHSQRLEPGVSIGQKRKGKEVMTDPEIEEDGSSRRLTPKD
        VPPPPQLPFLERGPQAPQLNPNILSTFNMG LKPLEP RM IPTNMPMDTG EHGGEQEKSHSQRLEPGVSIGQKRKGKEVM+DPEIEEDGSSRRLTPKD
Subjt:  VPPPPQLPFLERGPQAPQLNPNILSTFNMGQLKPLEPPRMPIPTNMPMDTGVEHGGEQEKSHSQRLEPGVSIGQKRKGKEVMTDPEIEEDGSSRRLTPKD

Query:  SSMENRDEEQFYSSPLIITPGDG
        SSMENRDEEQFYSSPLIITPGDG
Subjt:  SSMENRDEEQFYSSPLIITPGDG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCTTCTTCTCAACACACTTCACTCCCTACTTCTCCTTCCCACGCTCCTACACAACCTCCTATGATGAGACCACATGGTTATGTAAATTTTCAGCAGCTA
CCCACCCTTAATATACCTCAAAACAGTGAGTTTAGGGCTACAAATCCTCAACAACTTCCTCCAATGATCAATCCGGGTATGTACCAACCGTTTATGTTTTACCCG
GTTCCTTCCTATCATTTTCCCTTGTCCCAAATGCAAATTCCAGCTAGTGTTCATCCTTATGGAATGCCCAACCCATCTACTCTATTTCCTAGCCTTCCACCTTAT
TATGGAATGGGTCATTGGGTACCTCCACAAAATTATGGGATGATTTCACCTAGGGTTCCCCCACCACCTCAACTTCCATTCCTAGAAAGAGGACCTCAAGCACCC
CAATTGAACCCTAACATATTGAGTACCTTCAACATGGGACAACTAAAACCCTTAGAGCCTCCTAGGATGCCAATCCCAACCAATATGCCAATGGATACAGGAGTT
GAGCATGGAGGAGAGCAAGAGAAGAGCCATAGCCAGAGGCTAGAGCCCGGGGTTTCGATAGGGCAAAAGAGGAAGGGCAAGGAGGTGATGACAGACCCAGAAATT
GAGGAAGATGGGAGTAGTAGGCGTCTGACGCCTAAGGATTCATCTATGGAGAACAGGGATGAGGAGCAGTTTTATTCATCTCCATTGATTATTACACCGGGAGAT
GGAACCTTCCCCATTGGATACACCTACAGAAGGAGCATTTTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCTTCTTCTCAACACACTTCACTCCCTACTTCTCCTTCCCACGCTCCTACACAACCTCCTATGATGAGACCACATGGTTATGTAAATTTTCAGCAGCTA
CCCACCCTTAATATACCTCAAAACAGTGAGTTTAGGGCTACAAATCCTCAACAACTTCCTCCAATGATCAATCCGGGTATGTACCAACCGTTTATGTTTTACCCG
GTTCCTTCCTATCATTTTCCCTTGTCCCAAATGCAAATTCCAGCTAGTGTTCATCCTTATGGAATGCCCAACCCATCTACTCTATTTCCTAGCCTTCCACCTTAT
TATGGAATGGGTCATTGGGTACCTCCACAAAATTATGGGATGATTTCACCTAGGGTTCCCCCACCACCTCAACTTCCATTCCTAGAAAGAGGACCTCAAGCACCC
CAATTGAACCCTAACATATTGAGTACCTTCAACATGGGACAACTAAAACCCTTAGAGCCTCCTAGGATGCCAATCCCAACCAATATGCCAATGGATACAGGAGTT
GAGCATGGAGGAGAGCAAGAGAAGAGCCATAGCCAGAGGCTAGAGCCCGGGGTTTCGATAGGGCAAAAGAGGAAGGGCAAGGAGGTGATGACAGACCCAGAAATT
GAGGAAGATGGGAGTAGTAGGCGTCTGACGCCTAAGGATTCATCTATGGAGAACAGGGATGAGGAGCAGTTTTATTCATCTCCATTGATTATTACACCGGGAGAT
GGAACCTTCCCCATTGGATACACCTACAGAAGGAGCATTTTGTAG
Protein sequenceShow/hide protein sequence
MASSSQHTSLPTSPSHAPTQPPMMRPHGYVNFQQLPTLNIPQNSEFRATNPQQLPPMINPGMYQPFMFYPVPSYHFPLSQMQIPASVHPYGMPNPSTLFPSLPPY
YGMGHWVPPQNYGMISPRVPPPPQLPFLERGPQAPQLNPNILSTFNMGQLKPLEPPRMPIPTNMPMDTGVEHGGEQEKSHSQRLEPGVSIGQKRKGKEVMTDPEI
EEDGSSRRLTPKDSSMENRDEEQFYSSPLIITPGDGTFPIGYTYRRSIL