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MS024708 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS024708
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRetrotransposon protein, putative, Ty3-gypsy subclass, expressed
Genome locationscaffold262:276384..278234
RNA-Seq ExpressionMS024708
SyntenyMS024708
Gene Ontology termsGO:0009987 - cellular process (biological process)
GO:0015031 - protein transport (biological process)
GO:0005743 - mitochondrial inner membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AAL67581.1 putative gag-pol protein [Oryza sativa Japonica Group]1.1e-0825.63Show/hide
Query:  RAQPHQEPLQTWPDGPSSGFR--DKHETSSRPSGSRTGLVRKDLDRVKE---EIFNRVKNELGA-GGIDSTTQYEPSKIAQEPFTASMLAMDMPKGFKGQ
        R   HQ  L     G S   R  D+    S P   R   V +     ++   ++ + +     A G   S  +Y+        FT  +  +D P GFK  
Subjt:  RAQPHQEPLQTWPDGPSSGFR--DKHETSSRPSGSRTGLVRKDLDRVKE---EIFNRVKNELGA-GGIDSTTQYEPSKIAQEPFTASMLAMDMPKGFKGQ

Query:  RLDKYDGSINPVDHTTSYHDAIRQANG--------IPFLLDQ-----------TEAGKNLKAYVARFSNERLRVSNCNESVAPWALSQGIRERKLVRSLG
         ++KYDG+ NP    T Y  AIR A G        +P   ++            ++G++L+ Y+ RFS +R ++S+  + V   A ++GIR   LV   G
Subjt:  RLDKYDGSINPVDHTTSYHDAIRQANG--------IPFLLDQ-----------TEAGKNLKAYVARFSNERLRVSNCNESVAPWALSQGIRERKLVRSLG

Query:  EYPARSMTELTARINRHIVREEMLAAQSLDK---KPRN
          P R++ ++  + N +   E+ + A        KP+N
Subjt:  EYPARSMTELTARINRHIVREEMLAAQSLDK---KPRN

AAT01348.1 putative polyprotein [Oryza sativa Japonica Group]3.0e-0929.79Show/hide
Query:  STTQYEPSKIAQEPFTASMLAMDMPKGFKGQRLDKYDGSINPVDHTTSYHDAIRQANGIPFLLDQ---TEAGKNLKAYVARFSNERLRVSNCNESVAPWA
        S  +Y+        FT  +  +D P GFK   ++KYDG+ NP    T Y  AIR A G    +      ++G++L+ Y+ RFS +R ++S+  + V   A
Subjt:  STTQYEPSKIAQEPFTASMLAMDMPKGFKGQRLDKYDGSINPVDHTTSYHDAIRQANGIPFLLDQ---TEAGKNLKAYVARFSNERLRVSNCNESVAPWA

Query:  LSQGIRERKLVRSLGEYPARSMTELTARINRHIVREEMLAA
         ++GIR   LV      P R++ ++  + N +   E+ + A
Subjt:  LSQGIRERKLVRSLGEYPARSMTELTARINRHIVREEMLAA

XP_022157396.1 mitochondrial import inner membrane translocase subunit Tim16-like isoform X1 [Momordica charantia]4.4e-1359.7Show/hide
Query:  NRVKNELGAGGIDSTTQYEPSKIAQEPFTASMLAMDMPKGFKGQRLDKYDGSINPVDHTTSYHDAIR
        N+  N  G G   ST  YEP +IAQE FT ++L M + KGFKG R+DKYDGS +PVDH TSYHDA+R
Subjt:  NRVKNELGAGGIDSTTQYEPSKIAQEPFTASMLAMDMPKGFKGQRLDKYDGSINPVDHTTSYHDAIR

XP_022157397.1 mitochondrial import inner membrane translocase subunit PAM16 like 2-like isoform X2 [Momordica charantia]9.9e-1351.25Show/hide
Query:  VRKDLDRVKEEIFNRVKNELGAGGIDSTTQYEPSKIAQEPFTASMLAMDMPKGFKGQRLDKYDGSINPVDHTTSYHDAIR
        V +  +R++    ++  N  G G   ST  YEP +IAQE FT ++L M + KGFKG R+DKYDGS +PVDH TSYHDA+R
Subjt:  VRKDLDRVKEEIFNRVKNELGAGGIDSTTQYEPSKIAQEPFTASMLAMDMPKGFKGQRLDKYDGSINPVDHTTSYHDAIR

XP_022891996.1 uncharacterized protein LOC111406861 [Olea europaea var. sylvestris]1.1e-0826.32Show/hide
Query:  DLDRVKEEIFNRVKNELGAGGIDSTTQYEPSKIAQEPFTASMLAMDMPKGFKGQRLDKYDGSINPVDHTTSYHDAIR------------QANGIPFLLDQ
        DL+R  EEI ++  ++  +   D   Q     + ++PFT  ++A+ +PKGFK   ++ YDG  +P+DH  ++ D +R            +   I  +   
Subjt:  DLDRVKEEIFNRVKNELGAGGIDSTTQYEPSKIAQEPFTASMLAMDMPKGFKGQRLDKYDGSINPVDHTTSYHDAIR------------QANGIPFLLDQ

Query:  TEAGKNLKAYVARFSNERLRVSNCNESVAPWALSQGIRERKLVRSLGEYPARSMTELTARINRHIVREEMLAAQSLDKKPRNKGKLMEKSATKRESSGSQ
         +  ++L+ Y+ARFS   L + +   S    AL  G R R    SL + P  SM +L  + ++++  EE       +K P+N     E  A K+++   Q
Subjt:  TEAGKNLKAYVARFSNERLRVSNCNESVAPWALSQGIRERKLVRSLGEYPARSMTELTARINRHIVREEMLAAQSLDKKPRNKGKLMEKSATKRESSGSQ

Query:  SDSRTDQPQ
          +  ++P+
Subjt:  SDSRTDQPQ

TrEMBL top hitse value%identityAlignment
A0A6J1DUD6 mitochondrial import inner membrane translocase subunit PAM16 like 2-like isoform X24.8e-1351.25Show/hide
Query:  VRKDLDRVKEEIFNRVKNELGAGGIDSTTQYEPSKIAQEPFTASMLAMDMPKGFKGQRLDKYDGSINPVDHTTSYHDAIR
        V +  +R++    ++  N  G G   ST  YEP +IAQE FT ++L M + KGFKG R+DKYDGS +PVDH TSYHDA+R
Subjt:  VRKDLDRVKEEIFNRVKNELGAGGIDSTTQYEPSKIAQEPFTASMLAMDMPKGFKGQRLDKYDGSINPVDHTTSYHDAIR

A0A6J1DXY4 mitochondrial import inner membrane translocase subunit Tim16-like isoform X12.1e-1359.7Show/hide
Query:  NRVKNELGAGGIDSTTQYEPSKIAQEPFTASMLAMDMPKGFKGQRLDKYDGSINPVDHTTSYHDAIR
        N+  N  G G   ST  YEP +IAQE FT ++L M + KGFKG R+DKYDGS +PVDH TSYHDA+R
Subjt:  NRVKNELGAGGIDSTTQYEPSKIAQEPFTASMLAMDMPKGFKGQRLDKYDGSINPVDHTTSYHDAIR

Q75H51 Ribonuclease H1.4e-0929.79Show/hide
Query:  STTQYEPSKIAQEPFTASMLAMDMPKGFKGQRLDKYDGSINPVDHTTSYHDAIRQANGIPFLLDQ---TEAGKNLKAYVARFSNERLRVSNCNESVAPWA
        S  +Y+        FT  +  +D P GFK   ++KYDG+ NP    T Y  AIR A G    +      ++G++L+ Y+ RFS +R ++S+  + V   A
Subjt:  STTQYEPSKIAQEPFTASMLAMDMPKGFKGQRLDKYDGSINPVDHTTSYHDAIRQANGIPFLLDQ---TEAGKNLKAYVARFSNERLRVSNCNESVAPWA

Query:  LSQGIRERKLVRSLGEYPARSMTELTARINRHIVREEMLAA
         ++GIR   LV      P R++ ++  + N +   E+ + A
Subjt:  LSQGIRERKLVRSLGEYPARSMTELTARINRHIVREEMLAA

Q7XBW9 Retrotransposon protein, putative, Ty3-gypsy subclass, expressed5.5e-0925.63Show/hide
Query:  RAQPHQEPLQTWPDGPSSGFR--DKHETSSRPSGSRTGLVRKDLDRVKE---EIFNRVKNELGA-GGIDSTTQYEPSKIAQEPFTASMLAMDMPKGFKGQ
        R   HQ  L     G S   R  D+    S P   R   V +     ++   ++ + +     A G   S  +Y+        FT  +  +D P GFK  
Subjt:  RAQPHQEPLQTWPDGPSSGFR--DKHETSSRPSGSRTGLVRKDLDRVKE---EIFNRVKNELGA-GGIDSTTQYEPSKIAQEPFTASMLAMDMPKGFKGQ

Query:  RLDKYDGSINPVDHTTSYHDAIRQANG--------IPFLLDQ-----------TEAGKNLKAYVARFSNERLRVSNCNESVAPWALSQGIRERKLVRSLG
         ++KYDG+ NP    T Y  AIR A G        +P   ++            ++G++L+ Y+ RFS +R ++S+  + V   A ++GIR   LV   G
Subjt:  RLDKYDGSINPVDHTTSYHDAIRQANG--------IPFLLDQ-----------TEAGKNLKAYVARFSNERLRVSNCNESVAPWALSQGIRERKLVRSLG

Query:  EYPARSMTELTARINRHIVREEMLAAQSLDK---KPRN
          P R++ ++  + N +   E+ + A        KP+N
Subjt:  EYPARSMTELTARINRHIVREEMLAAQSLDK---KPRN

Q8W3I6 Putative gag-pol protein5.5e-0925.63Show/hide
Query:  RAQPHQEPLQTWPDGPSSGFR--DKHETSSRPSGSRTGLVRKDLDRVKE---EIFNRVKNELGA-GGIDSTTQYEPSKIAQEPFTASMLAMDMPKGFKGQ
        R   HQ  L     G S   R  D+    S P   R   V +     ++   ++ + +     A G   S  +Y+        FT  +  +D P GFK  
Subjt:  RAQPHQEPLQTWPDGPSSGFR--DKHETSSRPSGSRTGLVRKDLDRVKE---EIFNRVKNELGA-GGIDSTTQYEPSKIAQEPFTASMLAMDMPKGFKGQ

Query:  RLDKYDGSINPVDHTTSYHDAIRQANG--------IPFLLDQ-----------TEAGKNLKAYVARFSNERLRVSNCNESVAPWALSQGIRERKLVRSLG
         ++KYDG+ NP    T Y  AIR A G        +P   ++            ++G++L+ Y+ RFS +R ++S+  + V   A ++GIR   LV   G
Subjt:  RLDKYDGSINPVDHTTSYHDAIRQANG--------IPFLLDQ-----------TEAGKNLKAYVARFSNERLRVSNCNESVAPWALSQGIRERKLVRSLG

Query:  EYPARSMTELTARINRHIVREEMLAAQSLDK---KPRN
          P R++ ++  + N +   E+ + A        KP+N
Subjt:  EYPARSMTELTARINRHIVREEMLAAQSLDK---KPRN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGTCGAACAAAGAAAGTGCCTGCTCAGGGGGCACGAAAGACTGTAAACAGCTACACCCCGTACGAGACCACAGCTGGCGGTGCGTGCTAGCGGTACGACAGACGCA
TCTTGCGGCCCTGGGCGACATGTCCAGAAGGTGCAGGCAGTGGGACTATCCTGCTGCTGTTGGGAATGTGCCCCCTTCTGTCCAATCGTACAATGTGCGACGTCCTTGCC
ACCTCCAACCATCGTCCTTCCTGGTCGGCCCGTCAGTGGATTACGTAGGACACCGCACCAGCGTCGAGTTCTTTGGTTTCAGGTCCAGTGGATTCAAAGCCGGACTGCTC
GTCCGAGCACAACCTCACCAAGAGCCGCTCCAGACGTGGCCCGACGGTCCCTCATCTGGATTCAGAGACAAGCATGAGACGTCAAGCAGGCCTAGCGGGTCCCGAACCGG
GCTCGTCCGAAAAGATTTGGATCGGGTCAAGGAGGAGATCTTCAACCGGGTAAAGAATGAACTCGGAGCTGGGGGCATCGACTCCACCACACAATATGAACCCTCCAAGA
TCGCCCAAGAGCCCTTCACAGCTAGCATGTTAGCCATGGATATGCCTAAAGGCTTCAAAGGGCAACGCCTGGACAAATACGACGGATCGATAAACCCCGTGGACCACACC
ACATCGTATCACGATGCGATACGACAGGCGAACGGAATTCCATTTCTCCTCGATCAAACAGAAGCCGGCAAGAACCTGAAAGCATATGTCGCTCGTTTCTCGAACGAGAG
GCTCCGAGTATCCAACTGCAACGAGAGCGTGGCCCCGTGGGCACTCTCCCAGGGTATCAGAGAAAGAAAGCTTGTGCGTTCACTCGGCGAGTACCCCGCTAGGTCCATGA
CTGAGCTCACGGCTAGGATTAACAGGCACATAGTGAGGGAGGAAATGCTCGCGGCCCAATCCTTAGACAAAAAGCCGCGCAACAAAGGGAAATTGATGGAAAAGTCGGCT
ACGAAAAGAGAGTCCAGCGGGTCTCAGTCGGACTCTAGAACCGACCAACCACAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGTCGAACAAAGAAAGTGCCTGCTCAGGGGGCACGAAAGACTGTAAACAGCTACACCCCGTACGAGACCACAGCTGGCGGTGCGTGCTAGCGGTACGACAGACGCA
TCTTGCGGCCCTGGGCGACATGTCCAGAAGGTGCAGGCAGTGGGACTATCCTGCTGCTGTTGGGAATGTGCCCCCTTCTGTCCAATCGTACAATGTGCGACGTCCTTGCC
ACCTCCAACCATCGTCCTTCCTGGTCGGCCCGTCAGTGGATTACGTAGGACACCGCACCAGCGTCGAGTTCTTTGGTTTCAGGTCCAGTGGATTCAAAGCCGGACTGCTC
GTCCGAGCACAACCTCACCAAGAGCCGCTCCAGACGTGGCCCGACGGTCCCTCATCTGGATTCAGAGACAAGCATGAGACGTCAAGCAGGCCTAGCGGGTCCCGAACCGG
GCTCGTCCGAAAAGATTTGGATCGGGTCAAGGAGGAGATCTTCAACCGGGTAAAGAATGAACTCGGAGCTGGGGGCATCGACTCCACCACACAATATGAACCCTCCAAGA
TCGCCCAAGAGCCCTTCACAGCTAGCATGTTAGCCATGGATATGCCTAAAGGCTTCAAAGGGCAACGCCTGGACAAATACGACGGATCGATAAACCCCGTGGACCACACC
ACATCGTATCACGATGCGATACGACAGGCGAACGGAATTCCATTTCTCCTCGATCAAACAGAAGCCGGCAAGAACCTGAAAGCATATGTCGCTCGTTTCTCGAACGAGAG
GCTCCGAGTATCCAACTGCAACGAGAGCGTGGCCCCGTGGGCACTCTCCCAGGGTATCAGAGAAAGAAAGCTTGTGCGTTCACTCGGCGAGTACCCCGCTAGGTCCATGA
CTGAGCTCACGGCTAGGATTAACAGGCACATAGTGAGGGAGGAAATGCTCGCGGCCCAATCCTTAGACAAAAAGCCGCGCAACAAAGGGAAATTGATGGAAAAGTCGGCT
ACGAAAAGAGAGTCCAGCGGGTCTCAGTCGGACTCTAGAACCGACCAACCACAGTGA
Protein sequenceShow/hide protein sequence
MSSNKESACSGGTKDCKQLHPVRDHSWRCVLAVRQTHLAALGDMSRRCRQWDYPAAVGNVPPSVQSYNVRRPCHLQPSSFLVGPSVDYVGHRTSVEFFGFRSSGFKAGLL
VRAQPHQEPLQTWPDGPSSGFRDKHETSSRPSGSRTGLVRKDLDRVKEEIFNRVKNELGAGGIDSTTQYEPSKIAQEPFTASMLAMDMPKGFKGQRLDKYDGSINPVDHT
TSYHDAIRQANGIPFLLDQTEAGKNLKAYVARFSNERLRVSNCNESVAPWALSQGIRERKLVRSLGEYPARSMTELTARINRHIVREEMLAAQSLDKKPRNKGKLMEKSA
TKRESSGSQSDSRTDQPQ