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MS024839 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS024839
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold176:490811..494808
RNA-Seq ExpressionMS024839
SyntenyMS024839
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_012845387.1 PREDICTED: uncharacterized protein LOC105965392 [Erythranthe guttata]4.4e-1546.15Show/hide
Query:  GLWTEDGFEINQCFISYFEGLFKSSQSSSEEIENAIGCIVPRVTPEMNSWLLSTYTREEVERAVKEMVPTKALGPDDFPALFYQKFWKTVG
        G+W E  FE+      YF  +F S   S   +E  +G I P V   MN  LL  YT+EEV+RA+ EM P K+ GPD FPA+F+Q+FW  VG
Subjt:  GLWTEDGFEINQCFISYFEGLFKSSQSSSEEIENAIGCIVPRVTPEMNSWLLSTYTREEVERAVKEMVPTKALGPDDFPALFYQKFWKTVG

XP_012845389.1 PREDICTED: uncharacterized protein LOC105965394 [Erythranthe guttata]5.7e-1546.15Show/hide
Query:  GLWTEDGFEINQCFISYFEGLFKSSQSSSEEIENAIGCIVPRVTPEMNSWLLSTYTREEVERAVKEMVPTKALGPDDFPALFYQKFWKTVG
        G+W E  FE+      YF  +F S   S   +E  +G I P V   MN  LL  YT+EEV+RA+ EM P K+ GPD FPA+F+Q+FW  VG
Subjt:  GLWTEDGFEINQCFISYFEGLFKSSQSSSEEIENAIGCIVPRVTPEMNSWLLSTYTREEVERAVKEMVPTKALGPDDFPALFYQKFWKTVG

XP_012852582.1 PREDICTED: uncharacterized protein LOC105972190 [Erythranthe guttata]5.7e-1546.15Show/hide
Query:  GLWTEDGFEINQCFISYFEGLFKSSQSSSEEIENAIGCIVPRVTPEMNSWLLSTYTREEVERAVKEMVPTKALGPDDFPALFYQKFWKTVG
        G+W E  FE+      YF  +F S   S   +E  +G I P V   MN  LL  YT+EEV+RA+ EM P K+ GPD FPA+F+Q+FW  VG
Subjt:  GLWTEDGFEINQCFISYFEGLFKSSQSSSEEIENAIGCIVPRVTPEMNSWLLSTYTREEVERAVKEMVPTKALGPDDFPALFYQKFWKTVG

XP_024033484.1 uncharacterized protein LOC112095607 [Citrus clementina]2.2e-1443.88Show/hide
Query:  GLWTEDGFEINQCFISYFEGLFKSSQSSSEEIENAIGCIVPRVTPEMNSWLLSTYTREEVERAVKEMVPTKALGPDDFPALFYQKFWKTVGPQTVGEC
        G WT+   E+   F  YF  LF +SQ S EEI  A+  I PRV+  MN  L   +T E++  A+ +M PTKA GPD  PA FYQK W  V  + +  C
Subjt:  GLWTEDGFEINQCFISYFEGLFKSSQSSSEEIENAIGCIVPRVTPEMNSWLLSTYTREEVERAVKEMVPTKALGPDDFPALFYQKFWKTVGPQTVGEC

XP_024037590.1 uncharacterized protein LOC112097210 [Citrus clementina]2.2e-1443.3Show/hide
Query:  LWTEDGFEINQCFISYFEGLFKSSQSSSEEIENAIGCIVPRVTPEMNSWLLSTYTREEVERAVKEMVPTKALGPDDFPALFYQKFWKTVGPQTVGEC
        +W +D   + + F  YF  LF +S  S ++IE A+  + PRVT EMN+ L S +T EEV  A+ +M PTKA GPD  PA F+QK W +V    +  C
Subjt:  LWTEDGFEINQCFISYFEGLFKSSQSSSEEIENAIGCIVPRVTPEMNSWLLSTYTREEVERAVKEMVPTKALGPDDFPALFYQKFWKTVGPQTVGEC

TrEMBL top hitse value%identityAlignment
A0A2N9ES30 Reverse transcriptase domain-containing protein2.3e-1441.49Show/hide
Query:  RGLWTEDGFEINQCFISYFEGLFKSSQSSSEEIENAIGCIVPRVTPEMNSWLLSTYTREEVERAVKEMVPTKALGPDDFPALFYQKFWKTVGPQ
        +G+W E+  E     + +FE +F++  S  E IE A+  +   ++ E+N++L+S +T +EVE A+K+M P KA GPD  P LF+QK+WK VGP+
Subjt:  RGLWTEDGFEINQCFISYFEGLFKSSQSSSEEIENAIGCIVPRVTPEMNSWLLSTYTREEVERAVKEMVPTKALGPDDFPALFYQKFWKTVGPQ

A0A6J1DX30 uncharacterized protein LOC1110248741.8e-1455.88Show/hide
Query:  EIENAIGCIVPRVTPEMNSWLLSTYTREEVERAVKEMVPTKALGPDDFPALFYQKFWKTVGPQTVGEC
        +IE  I  I  R+T E+N  LL+ YT+EE+E A+++M PTKALGPD FPALFYQ +W  VGP+T+  C
Subjt:  EIENAIGCIVPRVTPEMNSWLLSTYTREEVERAVKEMVPTKALGPDDFPALFYQKFWKTVGPQTVGEC

A0A803P3X4 Uncharacterized protein1.5e-1340.82Show/hide
Query:  GLWTEDGFEINQCFISYFEGLFKSSQSSSEEIENAIGCIVPRVTPEMNSWLLSTYTREEVERAVKEMVPTKALGPDDFPALFYQKFWKTVGPQTVGEC
        G+W +D   + +    Y+  LF SS+++    E  +  + P+VT +MN  L+   T E+V RAVK+M PTKA GPD  PALFYQKFW  +    +  C
Subjt:  GLWTEDGFEINQCFISYFEGLFKSSQSSSEEIENAIGCIVPRVTPEMNSWLLSTYTREEVERAVKEMVPTKALGPDDFPALFYQKFWKTVGPQTVGEC

A0A803PI64 Uncharacterized protein6.8e-1440.82Show/hide
Query:  GLWTEDGFEINQCFISYFEGLFKSSQSSSEEIENAIGCIVPRVTPEMNSWLLSTYTREEVERAVKEMVPTKALGPDDFPALFYQKFWKTVGPQTVGEC
        G+W  +   + +   +YF  +F SS    +  E  I  I P+VT +MN  LL  +T EE+ +AVK+M PTKA G D  PALFY KFW  +    +G C
Subjt:  GLWTEDGFEINQCFISYFEGLFKSSQSSSEEIENAIGCIVPRVTPEMNSWLLSTYTREEVERAVKEMVPTKALGPDDFPALFYQKFWKTVGPQTVGEC

A0A803PYI0 Uncharacterized protein2.3e-1439.8Show/hide
Query:  GLWTEDGFEINQCFISYFEGLFKSSQSSSEEIENAIGCIVPRVTPEMNSWLLSTYTREEVERAVKEMVPTKALGPDDFPALFYQKFWKTVGPQTVGEC
        G+W  +   + +   +YF  +F+SS    +  E  I  I P+VT +MN  LL  +T +E+ +AVK+M PTKA G +  PALFYQKFW  +    +G C
Subjt:  GLWTEDGFEINQCFISYFEGLFKSSQSSSEEIENAIGCIVPRVTPEMNSWLLSTYTREEVERAVKEMVPTKALGPDDFPALFYQKFWKTVGPQTVGEC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGCAGCACACGGGCGAGGCAGAATGCACGCAAGGCAGGGCGTACATTTGGAGGGTGCACTGGTGGCGTGCGATAGGAGATGCACAAGGCTGGAATATGGGCGCAGT
GGCATGCGCGCAAGACGTCTGCTTGCGAGGGCTTTGGACCGAGGATGGGTTTGAAATCAACCAATGCTTTATCTCTTATTTTGAAGGGCTTTTTAAGTCTTCTCAGTCGT
CTAGCGAGGAGATTGAAAATGCCATTGGATGTATTGTTCCCCGAGTTACTCCAGAGATGAACAGTTGGCTTCTTTCTACTTACACTCGAGAAGAAGTGGAGCGGGCTGTC
AAAGAGATGGTCCCCACTAAAGCTCTTGGGCCAGATGACTTTCCAGCACTGTTCTATCAGAAATTTTGGAAGACTGTGGGGCCTCAAACAGTTGGTGAATGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTGCAGCACACGGGCGAGGCAGAATGCACGCAAGGCAGGGCGTACATTTGGAGGGTGCACTGGTGGCGTGCGATAGGAGATGCACAAGGCTGGAATATGGGCGCAGT
GGCATGCGCGCAAGACGTCTGCTTGCGAGGGCTTTGGACCGAGGATGGGTTTGAAATCAACCAATGCTTTATCTCTTATTTTGAAGGGCTTTTTAAGTCTTCTCAGTCGT
CTAGCGAGGAGATTGAAAATGCCATTGGATGTATTGTTCCCCGAGTTACTCCAGAGATGAACAGTTGGCTTCTTTCTACTTACACTCGAGAAGAAGTGGAGCGGGCTGTC
AAAGAGATGGTCCCCACTAAAGCTCTTGGGCCAGATGACTTTCCAGCACTGTTCTATCAGAAATTTTGGAAGACTGTGGGGCCTCAAACAGTTGGTGAATGCTAG
Protein sequenceShow/hide protein sequence
MVQHTGEAECTQGRAYIWRVHWWRAIGDAQGWNMGAVACAQDVCLRGLWTEDGFEINQCFISYFEGLFKSSQSSSEEIENAIGCIVPRVTPEMNSWLLSTYTREEVERAV
KEMVPTKALGPDDFPALFYQKFWKTVGPQTVGEC