; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS024852 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS024852
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionMYB domain class transcription factor
Genome locationscaffold176:964088..965074
RNA-Seq ExpressionMS024852
SyntenyMS024852
Gene Ontology termsNA
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017930 - Myb domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3975164.1 hypothetical protein CMV_001563 [Castanea mollissima]1.2e-2541.29Show/hide
Query:  MNYLRSDIKRGNFQKEEDETILQLHETLGNRWSAIAAHLPGRTDNEIKNRWNTNLKKLSNQ------------------------KPSNNSNLGTATASS
        MNYLR +IKRGN+ KEE+ETI++LHE+LGNRWS IA+ LPGRTDNEIKN W+TNLKK   Q                        K +NNS+L   T   
Subjt:  MNYLRSDIKRGNFQKEEDETILQLHETLGNRWSAIAAHLPGRTDNEIKNRWNTNLKKLSNQ------------------------KPSNNSNLGTATASS

Query:  STLIICSQQKSPQEDHSDQTLLVLDSAADEVTNLGEAEAEAEGFGFSTQLSMELGGNLWTDPFISEDTFSSSNNYNPTDVSMDLFEDYEKLPPLFDDFLW
           II S   SPQ+  S+ + +  D+A   +TN+       +    S +   E   N WT+PF+++      N+Y P+D    L  D E L PLFD+F  
Subjt:  STLIICSQQKSPQEDHSDQTLLVLDSAADEVTNLGEAEAEAEGFGFSTQLSMELGGNLWTDPFISEDTFSSSNNYNPTDVSMDLFEDYEKLPPLFDDFLW

Query:  P
        P
Subjt:  P

KAG7010707.1 Transcription factor MYB80, partial [Cucurbita argyrosperma subsp. argyrosperma]4.0e-2645.51Show/hide
Query:  KRGNFQKEEDETILQLHETLGN-------RWSAIAAHLPGRTDNEIKNRWNTNLKKLSNQKPSNNSNLGTATASSSTLIICSQQKSPQ-EDHSDQTLLVL
        ++G + KEEDE +       G+       +WSAIAAHLPGRTDN+IKN W+TNLKKL +Q PSN      A +S S L I  +++  + E+  D+TL VL
Subjt:  KRGNFQKEEDETILQLHETLGN-------RWSAIAAHLPGRTDNEIKNRWNTNLKKLSNQKPSNNSNLGTATASSSTLIICSQQKSPQ-EDHSDQTLLVL

Query:  DS--------AADEVTNLGEAEAEAEGFGFSTQLSMELGGNLWTDPFISEDTFSSSNNYNPTDVSMDLFEDYEKLPPL
        +S        A  +  N GE E      G + + SMELGGNLWTDPF+ ED  S  N  NPT V MDL + YE  PP+
Subjt:  DS--------AADEVTNLGEAEAEAEGFGFSTQLSMELGGNLWTDPFISEDTFSSSNNYNPTDVSMDLFEDYEKLPPL

XP_022944071.1 transcription factor MYB13-like [Cucurbita moschata]3.5e-3855.93Show/hide
Query:  MNYLRSDIKRGNFQKEEDETILQLHETLGNRWSAIAAHLPGRTDNEIKNRWNTNLKKLSNQKPSNNSNLGTATASSSTLIICSQQKSPQEDHSDQTLLVL
        MNYL  DIKRGNFQKEED+TIL+L  TLGNRWSAIAAHLPGRTDN+IKN W+TNLKKL +Q PSN      A +S S L I  +++    +  D+TL VL
Subjt:  MNYLRSDIKRGNFQKEEDETILQLHETLGNRWSAIAAHLPGRTDNEIKNRWNTNLKKLSNQKPSNNSNLGTATASSSTLIICSQQKSPQEDHSDQTLLVL

Query:  DS--------AADEVTNLGEAEAEAEGFGFSTQLSMELGGNLWTDPFISEDTFSSSNNYNPTDVSMDLFEDYEKLPP
        +S        A  E  N GE E      G + + SMELGGNLWTDPF+ ED  S  N  NPT V MDL + YE  PP
Subjt:  DS--------AADEVTNLGEAEAEAEGFGFSTQLSMELGGNLWTDPFISEDTFSSSNNYNPTDVSMDLFEDYEKLPP

XP_022986201.1 transcription factor MYB13-like [Cucurbita maxima]2.4e-3957.06Show/hide
Query:  MNYLRSDIKRGNFQKEEDETILQLHETLGNRWSAIAAHLPGRTDNEIKNRWNTNLKKLSNQKPSNNSNLGTATASSSTLIICSQQKSPQEDHSDQTLLVL
        MNYLR DIKRGNFQKEED+TIL+L  TLGNRWSAIA +LPGRTDNEIKN W+TNLKKL +Q PSN      A +S S L I       +E+  D+TL+VL
Subjt:  MNYLRSDIKRGNFQKEEDETILQLHETLGNRWSAIAAHLPGRTDNEIKNRWNTNLKKLSNQKPSNNSNLGTATASSSTLIICSQQKSPQEDHSDQTLLVL

Query:  DS--------AADEVTNLGEAEAEAEGFGFSTQLSMELGGNLWTDPFISEDTFSSSNNYNPTDVSMDLFEDYEKLPP
        +S        A  E  N GE E      G + + SME+GGNLWTDPF+ ED  S  N  NPT V MDLFE YE  PP
Subjt:  DS--------AADEVTNLGEAEAEAEGFGFSTQLSMELGGNLWTDPFISEDTFSSSNNYNPTDVSMDLFEDYEKLPP

XP_023512256.1 transcription factor WER-like [Cucurbita pepo subsp. pepo]4.5e-3857.63Show/hide
Query:  MNYLRSDIKRGNFQKEEDETILQLHETLGNRWSAIAAHLPGRTDNEIKNRWNTNLKKLSNQKPSNNSNLGTATASSSTLIICSQQKSPQEDHSDQTLLVL
        MNYL  +IKRGNFQKEED+TIL+L  TLGNRWSAIAAHLPGRTDNEIKN W+TNLKKL +Q PS N+ +  A ASS     CS+ +  +E   D+TL VL
Subjt:  MNYLRSDIKRGNFQKEEDETILQLHETLGNRWSAIAAHLPGRTDNEIKNRWNTNLKKLSNQKPSNNSNLGTATASSSTLIICSQQKSPQEDHSDQTLLVL

Query:  DS--------AADEVTNLGEAEAEAEGFGFSTQLSMELGGNLWTDPFISEDTFSSSNNYNPTDVSMDLFEDYEKLPP
        +S        A  E  N GE E      G + + SMELGGNLWTDPF+ ED  S  N  NPT V MDLF+ YE  PP
Subjt:  DS--------AADEVTNLGEAEAEAEGFGFSTQLSMELGGNLWTDPFISEDTFSSSNNYNPTDVSMDLFEDYEKLPP

TrEMBL top hitse value%identityAlignment
A0A2N9J0C4 Uncharacterized protein7.3e-2641.06Show/hide
Query:  MNYLRSDIKRGNFQKEEDETILQLHETLGNRWSAIAAHLPGRTDNEIKNRWNTNLKK-------LSNQKPSNNSNLGTATASSSTL-------------I
        MNYLR +IKRGN+ KEE++TI++LH++LGNRWSAIA+HLPGRTDNEIKN W+TNLKK        + + PS+N++         T              I
Subjt:  MNYLRSDIKRGNFQKEEDETILQLHETLGNRWSAIAAHLPGRTDNEIKNRWNTNLKK-------LSNQKPSNNSNLGTATASSSTL-------------I

Query:  ICSQQKSPQEDHSDQTLLVLDSAA----------DEVTNLGEAEAEAEGFGFSTQLSMELGGNLWTDPFISEDTFSSSNNYNPTDVSMDLFEDYEKLPPL
        I S   SPQ+  S+ +    D+ A          D VT+  EA    E +G +T       GN WT+PF+S++++  S+   P       F D E L PL
Subjt:  ICSQQKSPQEDHSDQTLLVLDSAA----------DEVTNLGEAEAEAEGFGFSTQLSMELGGNLWTDPFISEDTFSSSNNYNPTDVSMDLFEDYEKLPPL

Query:  FDDFLWP
        FD+FL P
Subjt:  FDDFLWP

A0A5N6RBT4 Uncharacterized protein1.3e-2239.36Show/hide
Query:  MNYLRSDIKRGNFQKEEDETILQLHETLGNRWSAIAAHLPGRTDNEIKNRWNTNLKK-------LSNQKPSNNSNLGTATASSSTLIICSQQKSPQEDHS
        MNYLR +IKRGN+ +EE++TI++LHE++GNRWS IAA LPGRTDNEIKN W+TNLKK       +SN++  + +NL         L      K P    +
Subjt:  MNYLRSDIKRGNFQKEEDETILQLHETLGNRWSAIAAHLPGRTDNEIKNRWNTNLKK-------LSNQKPSNNSNLGTATASSSTLIICSQQKSPQEDHS

Query:  DQ-TLLVLDS--AADEVTNLGEAEAEAE-GFGFSTQLSMELGGNLWTDPFISEDTFSSSNNYNPTDVSMDLFEDYEKLPPLFDDFLWP
        +Q T  ++DS  ++ +  + G +    +     ST+   E  GN WT+PF+ + +F SS      D     F + E + P+FD+F  P
Subjt:  DQ-TLLVLDS--AADEVTNLGEAEAEAE-GFGFSTQLSMELGGNLWTDPFISEDTFSSSNNYNPTDVSMDLFEDYEKLPPLFDDFLWP

A0A6J1FTF2 transcription factor MYB13-like1.7e-3855.93Show/hide
Query:  MNYLRSDIKRGNFQKEEDETILQLHETLGNRWSAIAAHLPGRTDNEIKNRWNTNLKKLSNQKPSNNSNLGTATASSSTLIICSQQKSPQEDHSDQTLLVL
        MNYL  DIKRGNFQKEED+TIL+L  TLGNRWSAIAAHLPGRTDN+IKN W+TNLKKL +Q PSN      A +S S L I  +++    +  D+TL VL
Subjt:  MNYLRSDIKRGNFQKEEDETILQLHETLGNRWSAIAAHLPGRTDNEIKNRWNTNLKKLSNQKPSNNSNLGTATASSSTLIICSQQKSPQEDHSDQTLLVL

Query:  DS--------AADEVTNLGEAEAEAEGFGFSTQLSMELGGNLWTDPFISEDTFSSSNNYNPTDVSMDLFEDYEKLPP
        +S        A  E  N GE E      G + + SMELGGNLWTDPF+ ED  S  N  NPT V MDL + YE  PP
Subjt:  DS--------AADEVTNLGEAEAEAEGFGFSTQLSMELGGNLWTDPFISEDTFSSSNNYNPTDVSMDLFEDYEKLPP

A0A6J1JAG0 transcription factor MYB13-like1.2e-3957.06Show/hide
Query:  MNYLRSDIKRGNFQKEEDETILQLHETLGNRWSAIAAHLPGRTDNEIKNRWNTNLKKLSNQKPSNNSNLGTATASSSTLIICSQQKSPQEDHSDQTLLVL
        MNYLR DIKRGNFQKEED+TIL+L  TLGNRWSAIA +LPGRTDNEIKN W+TNLKKL +Q PSN      A +S S L I       +E+  D+TL+VL
Subjt:  MNYLRSDIKRGNFQKEEDETILQLHETLGNRWSAIAAHLPGRTDNEIKNRWNTNLKKLSNQKPSNNSNLGTATASSSTLIICSQQKSPQEDHSDQTLLVL

Query:  DS--------AADEVTNLGEAEAEAEGFGFSTQLSMELGGNLWTDPFISEDTFSSSNNYNPTDVSMDLFEDYEKLPP
        +S        A  E  N GE E      G + + SME+GGNLWTDPF+ ED  S  N  NPT V MDLFE YE  PP
Subjt:  DS--------AADEVTNLGEAEAEAEGFGFSTQLSMELGGNLWTDPFISEDTFSSSNNYNPTDVSMDLFEDYEKLPP

A0A7N2MBE8 Uncharacterized protein1.2e-2541.79Show/hide
Query:  MNYLRSDIKRGNFQKEEDETILQLHETLGNRWSAIAAHLPGRTDNEIKNRWNTNLKKLSNQ------------------------KPSNNSNLGTATASS
        MNYLR +IKRGN+ KEE+ETI++LHE+LGNRWS IA+ LPGRTDNEIKN W+TNLKK   Q                        K +NNS+L   T   
Subjt:  MNYLRSDIKRGNFQKEEDETILQLHETLGNRWSAIAAHLPGRTDNEIKNRWNTNLKKLSNQ------------------------KPSNNSNLGTATASS

Query:  STLIICSQQKSPQEDHSDQTLLVLDSAADEVTNLGEAEAEAEGFGFSTQLSMELGGNLWTDPFISEDTFSSSNNYNPTDVSMDLFEDYEKLPPLFDDFLW
           II S   SPQ+  S+ + +  D+A    TN+       +    S +   E   N WT PF+++      N+Y P+D    L  D E L PLFD+FL 
Subjt:  STLIICSQQKSPQEDHSDQTLLVLDSAADEVTNLGEAEAEAEGFGFSTQLSMELGGNLWTDPFISEDTFSSSNNYNPTDVSMDLFEDYEKLPPLFDDFLW

Query:  P
        P
Subjt:  P

SwissProt top hitse value%identityAlignment
Q6K1S6 Transcription factor MYB306.4e-1938.71Show/hide
Query:  MNYLRSDIKRGNFQKEEDETILQLHETLGNRWSAIAAHLPGRTDNEIKNRWNTNLKKLSNQKPSNNSNLGT----ATASSSTLIICSQQKSPQEDHSDQT
        +NYLR DIKRGNF +EE++ I+ LH+ LGNRWSAIAA LPGRTDNEIKN W+T+LKK    KPS+          AT  ++ + +     +      +Q+
Subjt:  MNYLRSDIKRGNFQKEEDETILQLHETLGNRWSAIAAHLPGRTDNEIKNRWNTNLKKLSNQKPSNNSNLGT----ATASSSTLIICSQQKSPQEDHSDQT

Query:  LLVLDSAADEVTNLGEAEAEAEGFGFSTQLSMELGGNLWTDPFISEDTFSSSNNY
        L    ++A          A  E + +S   S +   +  TD F SE+ F   +++
Subjt:  LLVLDSAADEVTNLGEAEAEAEGFGFSTQLSMELGGNLWTDPFISEDTFSSSNNY

Q9FJP2 Transcription factor MYB531.9e-1876.79Show/hide
Query:  NYLRSDIKRGNFQKEEDETILQLHETLGNRWSAIAAHLPGRTDNEIKNRWNTNLKK
        NYLR DIKRG F  EE+ETIL LH  LGN+WS IA+HLPGRTDNEIKN WNT+LKK
Subjt:  NYLRSDIKRGNFQKEEDETILQLHETLGNRWSAIAAHLPGRTDNEIKNRWNTNLKK

Q9LNC9 Transcription factor MYB131.9e-1853.54Show/hide
Query:  MNYLRSDIKRGNFQKEEDETILQLHETLGNRWSAIAAHLPGRTDNEIKNRWNTNLKK-LSNQKPSNNSNLGTATASSSTLIICSQQKSPQEDHSDQTLL
        +NYLR DIKRGNF   E++TI+ LH+ LGNRWSAIAA LPGRTDNEIKN W+T+LKK L + +  NN     +T ++       QQ S   D S  T L
Subjt:  MNYLRSDIKRGNFQKEEDETILQLHETLGNRWSAIAAHLPGRTDNEIKNRWNTNLKK-LSNQKPSNNSNLGTATASSSTLIICSQQKSPQEDHSDQTLL

Q9LTC4 Transcription factor MYB151.7e-1942.45Show/hide
Query:  MNYLRSDIKRGNFQKEEDETILQLHETLGNRWSAIAAHLPGRTDNEIKNRWNTNLKK-LSNQKP----SNNSNLGTATASSSTLIICSQQKSPQE-----
        MNYL+ DIKRGNF KEE++ I+ LH+ LGNRWSAIAA LPGRTDNEIKN W+T+LKK L + +P    ++N   GT   S S +   +  +S  E     
Subjt:  MNYLRSDIKRGNFQKEEDETILQLHETLGNRWSAIAAHLPGRTDNEIKNRWNTNLKK-LSNQKP----SNNSNLGTATASSSTLIICSQQKSPQE-----

Query:  DHSDQTLLVLDSAADEVTNLGEAEAEAEGFGFSTQLSME
        + S ++L     +  EV+++     +    G+S +++M+
Subjt:  DHSDQTLLVLDSAADEVTNLGEAEAEAEGFGFSTQLSME

Q9M0J5 Transcription factor MYB413.2e-1873.21Show/hide
Query:  NYLRSDIKRGNFQKEEDETILQLHETLGNRWSAIAAHLPGRTDNEIKNRWNTNLKK
        NYLR DIKRG F  EE+ETI+QLH  +GN+WSAIAA LPGRTDNEIKN WNT+++K
Subjt:  NYLRSDIKRGNFQKEEDETILQLHETLGNRWSAIAAHLPGRTDNEIKNRWNTNLKK

Arabidopsis top hitse value%identityAlignment
AT1G06180.1 myb domain protein 131.3e-1953.54Show/hide
Query:  MNYLRSDIKRGNFQKEEDETILQLHETLGNRWSAIAAHLPGRTDNEIKNRWNTNLKK-LSNQKPSNNSNLGTATASSSTLIICSQQKSPQEDHSDQTLL
        +NYLR DIKRGNF   E++TI+ LH+ LGNRWSAIAA LPGRTDNEIKN W+T+LKK L + +  NN     +T ++       QQ S   D S  T L
Subjt:  MNYLRSDIKRGNFQKEEDETILQLHETLGNRWSAIAAHLPGRTDNEIKNRWNTNLKK-LSNQKPSNNSNLGTATASSSTLIICSQQKSPQEDHSDQTLL

AT3G23250.1 myb domain protein 151.2e-2042.45Show/hide
Query:  MNYLRSDIKRGNFQKEEDETILQLHETLGNRWSAIAAHLPGRTDNEIKNRWNTNLKK-LSNQKP----SNNSNLGTATASSSTLIICSQQKSPQE-----
        MNYL+ DIKRGNF KEE++ I+ LH+ LGNRWSAIAA LPGRTDNEIKN W+T+LKK L + +P    ++N   GT   S S +   +  +S  E     
Subjt:  MNYLRSDIKRGNFQKEEDETILQLHETLGNRWSAIAAHLPGRTDNEIKNRWNTNLKK-LSNQKP----SNNSNLGTATASSSTLIICSQQKSPQE-----

Query:  DHSDQTLLVLDSAADEVTNLGEAEAEAEGFGFSTQLSME
        + S ++L     +  EV+++     +    G+S +++M+
Subjt:  DHSDQTLLVLDSAADEVTNLGEAEAEAEGFGFSTQLSME

AT3G23250.2 myb domain protein 151.2e-2042.45Show/hide
Query:  MNYLRSDIKRGNFQKEEDETILQLHETLGNRWSAIAAHLPGRTDNEIKNRWNTNLKK-LSNQKP----SNNSNLGTATASSSTLIICSQQKSPQE-----
        MNYL+ DIKRGNF KEE++ I+ LH+ LGNRWSAIAA LPGRTDNEIKN W+T+LKK L + +P    ++N   GT   S S +   +  +S  E     
Subjt:  MNYLRSDIKRGNFQKEEDETILQLHETLGNRWSAIAAHLPGRTDNEIKNRWNTNLKK-LSNQKP----SNNSNLGTATASSSTLIICSQQKSPQE-----

Query:  DHSDQTLLVLDSAADEVTNLGEAEAEAEGFGFSTQLSME
        + S ++L     +  EV+++     +    G+S +++M+
Subjt:  DHSDQTLLVLDSAADEVTNLGEAEAEAEGFGFSTQLSME

AT5G54230.1 myb domain protein 491.0e-1975Show/hide
Query:  NYLRSDIKRGNFQKEEDETILQLHETLGNRWSAIAAHLPGRTDNEIKNRWNTNLKK
        NYLR DIKRG F  +E+ETI+QLH  LGN+WSAIA HLPGRTDNEIKN WNT++KK
Subjt:  NYLRSDIKRGNFQKEEDETILQLHETLGNRWSAIAAHLPGRTDNEIKNRWNTNLKK

AT5G65230.1 myb domain protein 531.3e-1976.79Show/hide
Query:  NYLRSDIKRGNFQKEEDETILQLHETLGNRWSAIAAHLPGRTDNEIKNRWNTNLKK
        NYLR DIKRG F  EE+ETIL LH  LGN+WS IA+HLPGRTDNEIKN WNT+LKK
Subjt:  NYLRSDIKRGNFQKEEDETILQLHETLGNRWSAIAAHLPGRTDNEIKNRWNTNLKK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATTATTTGAGATCAGATATCAAAAGAGGGAACTTCCAGAAGGAAGAGGATGAAACCATCCTTCAATTGCATGAAACTCTTGGAAATAGATGGTCTGCAATTGCTGC
TCATTTACCAGGAAGAACAGATAATGAGATAAAAAATCGTTGGAACACAAACCTAAAGAAACTCTCGAATCAGAAGCCATCAAATAACTCAAACTTGGGAACAGCAACGG
CCAGCTCAAGCACTCTGATAATCTGCTCGCAACAAAAATCCCCACAAGAGGATCATTCGGATCAAACCCTTTTGGTTTTGGATTCCGCAGCAGATGAAGTCACAAACTTG
GGCGAGGCTGAGGCTGAGGCTGAGGGATTTGGTTTCAGTACTCAACTTTCCATGGAACTTGGCGGCAACTTATGGACCGATCCTTTTATTTCTGAAGACACTTTTAGTAG
TTCTAATAATTATAATCCAACTGATGTGTCAATGGATCTATTTGAAGATTATGAAAAGTTACCTCCCTTGTTTGATGACTTTCTTTGGCCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATTATTTGAGATCAGATATCAAAAGAGGGAACTTCCAGAAGGAAGAGGATGAAACCATCCTTCAATTGCATGAAACTCTTGGAAATAGATGGTCTGCAATTGCTGC
TCATTTACCAGGAAGAACAGATAATGAGATAAAAAATCGTTGGAACACAAACCTAAAGAAACTCTCGAATCAGAAGCCATCAAATAACTCAAACTTGGGAACAGCAACGG
CCAGCTCAAGCACTCTGATAATCTGCTCGCAACAAAAATCCCCACAAGAGGATCATTCGGATCAAACCCTTTTGGTTTTGGATTCCGCAGCAGATGAAGTCACAAACTTG
GGCGAGGCTGAGGCTGAGGCTGAGGGATTTGGTTTCAGTACTCAACTTTCCATGGAACTTGGCGGCAACTTATGGACCGATCCTTTTATTTCTGAAGACACTTTTAGTAG
TTCTAATAATTATAATCCAACTGATGTGTCAATGGATCTATTTGAAGATTATGAAAAGTTACCTCCCTTGTTTGATGACTTTCTTTGGCCTTGA
Protein sequenceShow/hide protein sequence
MNYLRSDIKRGNFQKEEDETILQLHETLGNRWSAIAAHLPGRTDNEIKNRWNTNLKKLSNQKPSNNSNLGTATASSSTLIICSQQKSPQEDHSDQTLLVLDSAADEVTNL
GEAEAEAEGFGFSTQLSMELGGNLWTDPFISEDTFSSSNNYNPTDVSMDLFEDYEKLPPLFDDFLWP