; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS024858 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS024858
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptioncellulose synthase-like protein H1
Genome locationscaffold176:1317327..1317764
RNA-Seq ExpressionMS024858
SyntenyMS024858
Gene Ontology termsGO:0009833 - plant-type primary cell wall biogenesis (biological process)
GO:0030244 - cellulose biosynthetic process (biological process)
GO:0005886 - plasma membrane (cellular component)
GO:0016760 - cellulose synthase (UDP-forming) activity (molecular function)
GO:0051753 - mannan synthase activity (molecular function)
InterPro domainsIPR005150 - Cellulose synthase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3949202.1 hypothetical protein CMV_024902 [Castanea mollissima]2.6e-3957.86Show/hide
Query:  MGRVNTMCAWFVGAVSVILKLLGLAEITFEVTKKETSSNDNEKTEVELGRFTFDESPIIVTGTTILLVNVIALLTSLIGVRPSVEGGRGSGVLEMICSLW
        M R+ TM AWF G +SVILKLL ++E  FE+TKK+ S++ N   +V+ GRFTFDESPI V GTTIL+V++ AL+ SL+ ++P    G GSG+ E++CS+W
Subjt:  MGRVNTMCAWFVGAVSVILKLLGLAEITFEVTKKETSSNDNEKTEVELGRFTFDESPIIVTGTTILLVNVIALLTSLIGVRPSVEGGRGSGVLEMICSLW

Query:  LVLCFWPFLKGMFGKGSYGLPWSTISKSAVATVLFVYLCQ
        LVLCFWPFLKG+FGKG +G+P STI KSA   +LF++LC+
Subjt:  LVLCFWPFLKGMFGKGSYGLPWSTISKSAVATVLFVYLCQ

KAF3966650.1 hypothetical protein CMV_009268 [Castanea mollissima]7.5e-3957.86Show/hide
Query:  MGRVNTMCAWFVGAVSVILKLLGLAEITFEVTKKETSSNDNEKTEVELGRFTFDESPIIVTGTTILLVNVIALLTSLIGVRPSVEGGRGSGVLEMICSLW
        M R+ TM AW  G +SVILKLL ++E  FEVTKK+ S++ N   +V+ GRFTFDESPI V GTTIL+V++ AL+ SL+ ++P    G GSG+ E++CS+W
Subjt:  MGRVNTMCAWFVGAVSVILKLLGLAEITFEVTKKETSSNDNEKTEVELGRFTFDESPIIVTGTTILLVNVIALLTSLIGVRPSVEGGRGSGVLEMICSLW

Query:  LVLCFWPFLKGMFGKGSYGLPWSTISKSAVATVLFVYLCQ
        LVLCFWPFLKG+FGKG +G+P STI KSA   +LF++LC+
Subjt:  LVLCFWPFLKGMFGKGSYGLPWSTISKSAVATVLFVYLCQ

XP_016901847.1 PREDICTED: cellulose synthase-like protein H2 [Cucumis melo]9.7e-3963.01Show/hide
Query:  MGRVNTMCAWFVGAVSVILKLLGLAEITFEVTKKETSSNDNEKTEVELGRFTFDESPIIVTGTTILLVNVIALLTSLIGVRPSVEGGRGSGVLEMICSLW
        MGR+NT+CAW  G  +V+LK LG+ E  FEVTKKET S      EV+LG FTFDESP+ VTGTTILL+ ++ALL S I +  S     GS VLE+ICSLW
Subjt:  MGRVNTMCAWFVGAVSVILKLLGLAEITFEVTKKETSSNDNEKTEVELGRFTFDESPIIVTGTTILLVNVIALLTSLIGVRPSVEGGRGSGVLEMICSLW

Query:  LVLCFWPFLKG--MFGKGSYGLPWSTISKSAVATVLFVYLCQRIAI
        L+LCFWPFLKG  MFGKG YGLP+STI KSA+ T+LFV LCQ   I
Subjt:  LVLCFWPFLKG--MFGKGSYGLPWSTISKSAVATVLFVYLCQRIAI

XP_022140392.1 LOW QUALITY PROTEIN: cellulose synthase-like protein H1 [Momordica charantia]7.2e-4269.72Show/hide
Query:  MGRVNTMCAWFVGAVSVILKLLGLAEITFEVTKKETSSN-DNEKTEVELGRFTFDESPIIVTGTTILLVNVIALLTSLIGVRPSVEGGRGSGVLEMICSL
        MGR+NTMCAWF G V+V LK LG+AE  FEVTKKETSS+ D+ KT    G FTFDESPI V GTTILLV+VIALL SLIG +        SGVLEMICSL
Subjt:  MGRVNTMCAWFVGAVSVILKLLGLAEITFEVTKKETSSN-DNEKTEVELGRFTFDESPIIVTGTTILLVNVIALLTSLIGVRPSVEGGRGSGVLEMICSL

Query:  WLVLCFWPFLKGMFGKGSYGLPWSTISKSAVATVLFVYLCQR
        WLVLCFWPFLKGMF KGSYGLP STI KS +   +FV+LC R
Subjt:  WLVLCFWPFLKGMFGKGSYGLPWSTISKSAVATVLFVYLCQR

XP_022140393.1 cellulose synthase-like protein H1 [Momordica charantia]1.5e-4267.61Show/hide
Query:  MGRVNTMCAWFVGAVSVILKLLGLAEITFEVTKKETSSN-DNEKTEVELGRFTFDESPIIVTGTTILLVNVIALLTSLIGVRPSVEGGRGSGVLEMICSL
        MGR+NTMCAWF G V+V+LKLLG++E  FEVTKKETSS+ D+ KT+ +   FTFDESP  V GTTILLV+V+ALL SLIG R        SGVLEMICSL
Subjt:  MGRVNTMCAWFVGAVSVILKLLGLAEITFEVTKKETSSN-DNEKTEVELGRFTFDESPIIVTGTTILLVNVIALLTSLIGVRPSVEGGRGSGVLEMICSL

Query:  WLVLCFWPFLKGMFGKGSYGLPWSTISKSAVATVLFVYLCQR
        WLVLCFWPFLKG+FGKGSYGLP  T+ KS V   +FV+LC R
Subjt:  WLVLCFWPFLKGMFGKGSYGLPWSTISKSAVATVLFVYLCQR

TrEMBL top hitse value%identityAlignment
A0A0A0LQD3 Uncharacterized protein8.9e-3862.33Show/hide
Query:  MGRVNTMCAWFVGAVSVILKLLGLAEITFEVTKKETSSNDNEKTEVELGRFTFDESPIIVTGTTILLVNVIALLTSLIGVRPSVEGGRGSGVLEMICSLW
        MGR+NT+CAW  G  + +LKLLG+ E  FEVTKKET        EV+LG FTFDESP+ VTGTTILL+ +IALLTS I +     G   S VLE+ICSLW
Subjt:  MGRVNTMCAWFVGAVSVILKLLGLAEITFEVTKKETSSNDNEKTEVELGRFTFDESPIIVTGTTILLVNVIALLTSLIGVRPSVEGGRGSGVLEMICSLW

Query:  LVLCFWPFLKG--MFGKGSYGLPWSTISKSAVATVLFVYLCQRIAI
        L LCFWPFLKG  MFGKG YGLP+STI KSA+ T+LFV LC R  +
Subjt:  LVLCFWPFLKG--MFGKGSYGLPWSTISKSAVATVLFVYLCQRIAI

A0A1S4E0S9 cellulose synthase-like protein H24.7e-3963.01Show/hide
Query:  MGRVNTMCAWFVGAVSVILKLLGLAEITFEVTKKETSSNDNEKTEVELGRFTFDESPIIVTGTTILLVNVIALLTSLIGVRPSVEGGRGSGVLEMICSLW
        MGR+NT+CAW  G  +V+LK LG+ E  FEVTKKET S      EV+LG FTFDESP+ VTGTTILL+ ++ALL S I +  S     GS VLE+ICSLW
Subjt:  MGRVNTMCAWFVGAVSVILKLLGLAEITFEVTKKETSSNDNEKTEVELGRFTFDESPIIVTGTTILLVNVIALLTSLIGVRPSVEGGRGSGVLEMICSLW

Query:  LVLCFWPFLKG--MFGKGSYGLPWSTISKSAVATVLFVYLCQRIAI
        L+LCFWPFLKG  MFGKG YGLP+STI KSA+ T+LFV LCQ   I
Subjt:  LVLCFWPFLKG--MFGKGSYGLPWSTISKSAVATVLFVYLCQRIAI

A0A6J1CGT0 LOW QUALITY PROTEIN: cellulose synthase-like protein H13.5e-4269.72Show/hide
Query:  MGRVNTMCAWFVGAVSVILKLLGLAEITFEVTKKETSSN-DNEKTEVELGRFTFDESPIIVTGTTILLVNVIALLTSLIGVRPSVEGGRGSGVLEMICSL
        MGR+NTMCAWF G V+V LK LG+AE  FEVTKKETSS+ D+ KT    G FTFDESPI V GTTILLV+VIALL SLIG +        SGVLEMICSL
Subjt:  MGRVNTMCAWFVGAVSVILKLLGLAEITFEVTKKETSSN-DNEKTEVELGRFTFDESPIIVTGTTILLVNVIALLTSLIGVRPSVEGGRGSGVLEMICSL

Query:  WLVLCFWPFLKGMFGKGSYGLPWSTISKSAVATVLFVYLCQR
        WLVLCFWPFLKGMF KGSYGLP STI KS +   +FV+LC R
Subjt:  WLVLCFWPFLKGMFGKGSYGLPWSTISKSAVATVLFVYLCQR

A0A6J1CHW9 cellulose synthase-like protein H17.0e-4367.61Show/hide
Query:  MGRVNTMCAWFVGAVSVILKLLGLAEITFEVTKKETSSN-DNEKTEVELGRFTFDESPIIVTGTTILLVNVIALLTSLIGVRPSVEGGRGSGVLEMICSL
        MGR+NTMCAWF G V+V+LKLLG++E  FEVTKKETSS+ D+ KT+ +   FTFDESP  V GTTILLV+V+ALL SLIG R        SGVLEMICSL
Subjt:  MGRVNTMCAWFVGAVSVILKLLGLAEITFEVTKKETSSN-DNEKTEVELGRFTFDESPIIVTGTTILLVNVIALLTSLIGVRPSVEGGRGSGVLEMICSL

Query:  WLVLCFWPFLKGMFGKGSYGLPWSTISKSAVATVLFVYLCQR
        WLVLCFWPFLKG+FGKGSYGLP  T+ KS V   +FV+LC R
Subjt:  WLVLCFWPFLKGMFGKGSYGLPWSTISKSAVATVLFVYLCQR

A0A7N2R979 Uncharacterized protein6.2e-3957.86Show/hide
Query:  MGRVNTMCAWFVGAVSVILKLLGLAEITFEVTKKETSSNDNEKTEVELGRFTFDESPIIVTGTTILLVNVIALLTSLIGVRPSVEGGRGSGVLEMICSLW
        M R+ TM AW  G +SVILKLL ++E  FEVTKK+ S++ N   +V+ GRFTFDESPI V GTTIL+V++ AL+ SL+ + P    G GSG+ E++CS+W
Subjt:  MGRVNTMCAWFVGAVSVILKLLGLAEITFEVTKKETSSNDNEKTEVELGRFTFDESPIIVTGTTILLVNVIALLTSLIGVRPSVEGGRGSGVLEMICSLW

Query:  LVLCFWPFLKGMFGKGSYGLPWSTISKSAVATVLFVYLCQ
        LVLCFWPFLKG+FGKG +G+P STI KSA   +LF++LC+
Subjt:  LVLCFWPFLKGMFGKGSYGLPWSTISKSAVATVLFVYLCQ

SwissProt top hitse value%identityAlignment
O80891 Cellulose synthase-like protein B44.6e-2345.27Show/hide
Query:  GRVNTMCAWFVGAVSVILKLLGLAEITFEVTKK---ETSSNDNEK---TEVEL-----GRFTFDESPIIVTGTTILLVNVIALLTSLIGVRPSVEGGRGS
        GR+ T C+W    + VILKLLG+++  F VTKK   ET S    K    EV+      G+F FD S   + GT I+LVN+ AL   L+G++    GG GS
Subjt:  GRVNTMCAWFVGAVSVILKLLGLAEITFEVTKK---ETSSNDNEK---TEVEL-----GRFTFDESPIIVTGTTILLVNVIALLTSLIGVRPSVEGGRGS

Query:  GVLEMICSLWLVLCFWPFLKGMFGKGSYGLPWSTISKSAVATVLFVYL
        G+ E    + +V+ F PFLKGMF KG YG+P+ST+SK+A    LFV L
Subjt:  GVLEMICSLWLVLCFWPFLKGMFGKGSYGLPWSTISKSAVATVLFVYL

Q339N5 Cellulose synthase-like protein H14.6e-2341.38Show/hide
Query:  MGRVNTMCAWFVGAVSVILKLLGLAEITFEVTKKE--TSSNDNEKTEVELGRFTFDESPIIVTGTTILLVNVIALLTSLIG-VRPSVEG-GRGSGVLEMI
        M R+ +  AW +  ++VILK LG +E  FEVT+K+  TS  D+   E E GRFTFDES + +  T + +++VIA+       V  + EG   G G+ E I
Subjt:  MGRVNTMCAWFVGAVSVILKLLGLAEITFEVTKKE--TSSNDNEKTEVELGRFTFDESPIIVTGTTILLVNVIALLTSLIG-VRPSVEG-GRGSGVLEMI

Query:  CSLWLVLCFWPFLKGMFGKGSYGLPWSTISKSAVATVLFVYLCQR
           WLVLCF P L+G+ G G YG+PWS   K+ +   +F+  C+R
Subjt:  CSLWLVLCFWPFLKGMFGKGSYGLPWSTISKSAVATVLFVYLCQR

Q7PC71 Cellulose synthase-like protein H21.3e-2239.73Show/hide
Query:  MGRVNTMCAWFVGAVSVILKLLGLAEITFEVTKKETS-SNDNEKTE-VELGRFTFDESPIIVTGTTILLVNVIALLTSLIGVRPSVEGG--RGSGVLEMI
        M R+ ++ AW +  ++V+LK LGL+E  FEVT K+ S S+D++ T+  + GRFTFD  P+ +  T + ++N++A+      V      G     G+ E +
Subjt:  MGRVNTMCAWFVGAVSVILKLLGLAEITFEVTKKETS-SNDNEKTE-VELGRFTFDESPIIVTGTTILLVNVIALLTSLIGVRPSVEGG--RGSGVLEMI

Query:  CSLWLVLCFWPFLKG-MFGKGSYGLPWSTISKSAVATVLFVYLCQR
        C  WLVLCF+PF++G ++GKGSYG+PWS   K+++   +FV  C+R
Subjt:  CSLWLVLCFWPFLKG-MFGKGSYGLPWSTISKSAVATVLFVYLCQR

Q7XUT9 Cellulose synthase-like protein H21.3e-2239.73Show/hide
Query:  MGRVNTMCAWFVGAVSVILKLLGLAEITFEVTKKETS-SNDNEKTE-VELGRFTFDESPIIVTGTTILLVNVIALLTSLIGVRPSVEGG--RGSGVLEMI
        M R+ ++ AW +  ++V+LK LGL+E  FEVT K+ S S+D++ T+  + GRFTFD  P+ +  T + ++N++A+      V      G     G+ E +
Subjt:  MGRVNTMCAWFVGAVSVILKLLGLAEITFEVTKKETS-SNDNEKTE-VELGRFTFDESPIIVTGTTILLVNVIALLTSLIGVRPSVEGG--RGSGVLEMI

Query:  CSLWLVLCFWPFLKG-MFGKGSYGLPWSTISKSAVATVLFVYLCQR
        C  WLVLCF+PF++G ++GKGSYG+PWS   K+++   +FV  C+R
Subjt:  CSLWLVLCFWPFLKG-MFGKGSYGLPWSTISKSAVATVLFVYLCQR

Q7XUU0 Putative cellulose synthase-like protein H37.8e-2338.1Show/hide
Query:  MGRVNTMCAWFVGAVSVILKLLGLAEITFEVTKKETSSND--NEKTEVELGRFTFDESPIIVTGTTILLVNVIALL----TSLIGVRPSVEGGRGSGVLE
        M R+ +  AW +   +V+LK +GL+E  FEVT+KE S++D   +  EV+  RFTFD SP+ +  T + ++N++A+      ++ G    V G  G G+ E
Subjt:  MGRVNTMCAWFVGAVSVILKLLGLAEITFEVTKKETSSND--NEKTEVELGRFTFDESPIIVTGTTILLVNVIALL----TSLIGVRPSVEGGRGSGVLE

Query:  MICSLWLVLCFWPFLKGMFGKGSYGLPWSTISKSAVATVLFVYLCQR
         +   WL+LC  PF++G+ GKGSYG+PWS   K+++   LF++   R
Subjt:  MICSLWLVLCFWPFLKGMFGKGSYGLPWSTISKSAVATVLFVYLCQR

Arabidopsis top hitse value%identityAlignment
AT2G32530.1 cellulose synthase-like B34.7e-2343.45Show/hide
Query:  RVNTMCAWFVGAVSVILKLLGLAEITFEVTK----KETSSNDNEKTEVEL-------GRFTFDESPIIVTGTTILLVNVIALLTSLIGVRPSVEGGRGSG
        R+ T C+W      +ILKLLG+++  F VTK    K  S + +EK++ E+       G+F FD S   + GT ILLVN+ AL    +G++     G GSG
Subjt:  RVNTMCAWFVGAVSVILKLLGLAEITFEVTK----KETSSNDNEKTEVEL-------GRFTFDESPIIVTGTTILLVNVIALLTSLIGVRPSVEGGRGSG

Query:  VLEMICSLWLVLCFWPFLKGMFGKGSYGLPWSTISKSAVATVLFV
        + E    + +V+ F PFLKGMF KG YG+PWST+SK+A   VLFV
Subjt:  VLEMICSLWLVLCFWPFLKGMFGKGSYGLPWSTISKSAVATVLFV

AT2G32540.1 cellulose synthase-like B43.2e-2445.27Show/hide
Query:  GRVNTMCAWFVGAVSVILKLLGLAEITFEVTKK---ETSSNDNEK---TEVEL-----GRFTFDESPIIVTGTTILLVNVIALLTSLIGVRPSVEGGRGS
        GR+ T C+W    + VILKLLG+++  F VTKK   ET S    K    EV+      G+F FD S   + GT I+LVN+ AL   L+G++    GG GS
Subjt:  GRVNTMCAWFVGAVSVILKLLGLAEITFEVTKK---ETSSNDNEK---TEVEL-----GRFTFDESPIIVTGTTILLVNVIALLTSLIGVRPSVEGGRGS

Query:  GVLEMICSLWLVLCFWPFLKGMFGKGSYGLPWSTISKSAVATVLFVYL
        G+ E    + +V+ F PFLKGMF KG YG+P+ST+SK+A    LFV L
Subjt:  GVLEMICSLWLVLCFWPFLKGMFGKGSYGLPWSTISKSAVATVLFVYL

AT2G32610.1 cellulose synthase-like B14.7e-1535.81Show/hide
Query:  RVNTMCAWFVGAVSVILKLLGLAEITFEVTKKET-----------SSNDNEKTEVELGRFTFDESPIIVTGTTILLVNVIALLTSLIGVRPSV---EGGR
        R+    +W      + LKLLG++E  F +TKK             S  ++     +L +F FD S   + GT I+LVN+ AL    +G++ S    EGG 
Subjt:  RVNTMCAWFVGAVSVILKLLGLAEITFEVTKKET-----------SSNDNEKTEVELGRFTFDESPIIVTGTTILLVNVIALLTSLIGVRPSV---EGGR

Query:  GSGVLEMICSLWLVLCFWPFLKGMFGKGSYGLPWSTISKSAVATVLFV
        GSG+ E    + +++ F PFL G+F KG YG P ST+S +    VLFV
Subjt:  GSGVLEMICSLWLVLCFWPFLKGMFGKGSYGLPWSTISKSAVATVLFV

AT2G32620.1 cellulose synthase-like B1.3e-1739.04Show/hide
Query:  RVNTMCAWFVGAVSVILKLLGLAEITFEVTKK----ETSS------NDNEKTEVELGRFTFDESPIIVTGTTILLVNVIALLTSLIGVRPS--VEGGRGS
        R+    +W      +ILKLLGL++  F V+KK    ET S      +  E      G+  FD S   + GT I+LVN+ AL+   +G++ S    GG GS
Subjt:  RVNTMCAWFVGAVSVILKLLGLAEITFEVTKK----ETSS------NDNEKTEVELGRFTFDESPIIVTGTTILLVNVIALLTSLIGVRPS--VEGGRGS

Query:  GVLEMICSLWLVLCFWPFLKGMFGKGSYGLPWSTISKSAVATVLFV
        G+ E    + +V+ F+PFLKG+F KG YG+P ST+SK+    V FV
Subjt:  GVLEMICSLWLVLCFWPFLKGMFGKGSYGLPWSTISKSAVATVLFV

AT4G15290.1 Cellulose synthase family protein2.0e-2138Show/hide
Query:  RVNTMCAWFVGAVSVILKLLGLAEITFEVTKK-----------ETSSNDNEKTEVELGRFTFDESPIIVTGTTILLVNVIALLTSLIGVRPS--VEGGRG
        R+    +W      +ILKLLG+++I F + KK           + S  +++  ++ LG+F FD S + + GT I+LVN+ AL   L+ ++ S    GG G
Subjt:  RVNTMCAWFVGAVSVILKLLGLAEITFEVTKK-----------ETSSNDNEKTEVELGRFTFDESPIIVTGTTILLVNVIALLTSLIGVRPS--VEGGRG

Query:  SGVLEMICSLWLVLCFWPFLKGMFGKGSYGLPWSTISKSAVATVLFVYLC
        SG+ E    + +V+ F PFLKG+F  G Y +P ST+SK+A  TVLFV+ C
Subjt:  SGVLEMICSLWLVLCFWPFLKGMFGKGSYGLPWSTISKSAVATVLFVYLC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGAGGGTGAATACAATGTGTGCATGGTTTGTTGGAGCAGTCAGCGTCATTCTTAAACTTTTGGGTTTAGCAGAAATTACATTCGAAGTAACAAAGAAAGAAACGTC
TTCTAACGACAATGAGAAGACTGAAGTTGAATTAGGACGGTTCACATTCGACGAGTCTCCGATAATTGTGACGGGCACAACCATTTTGTTGGTGAATGTTATTGCACTAC
TTACCAGCTTGATAGGGGTGAGGCCGAGCGTTGAGGGTGGAAGAGGAAGCGGAGTGCTGGAGATGATATGTAGTTTGTGGTTAGTTTTATGCTTTTGGCCGTTTTTGAAG
GGAATGTTTGGTAAAGGGAGTTATGGACTTCCTTGGTCCACCATATCCAAGTCAGCTGTCGCGACGGTATTGTTCGTGTATTTGTGTCAAAGGATCGCTATTAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGGGAGGGTGAATACAATGTGTGCATGGTTTGTTGGAGCAGTCAGCGTCATTCTTAAACTTTTGGGTTTAGCAGAAATTACATTCGAAGTAACAAAGAAAGAAACGTC
TTCTAACGACAATGAGAAGACTGAAGTTGAATTAGGACGGTTCACATTCGACGAGTCTCCGATAATTGTGACGGGCACAACCATTTTGTTGGTGAATGTTATTGCACTAC
TTACCAGCTTGATAGGGGTGAGGCCGAGCGTTGAGGGTGGAAGAGGAAGCGGAGTGCTGGAGATGATATGTAGTTTGTGGTTAGTTTTATGCTTTTGGCCGTTTTTGAAG
GGAATGTTTGGTAAAGGGAGTTATGGACTTCCTTGGTCCACCATATCCAAGTCAGCTGTCGCGACGGTATTGTTCGTGTATTTGTGTCAAAGGATCGCTATTAAATAG
Protein sequenceShow/hide protein sequence
MGRVNTMCAWFVGAVSVILKLLGLAEITFEVTKKETSSNDNEKTEVELGRFTFDESPIIVTGTTILLVNVIALLTSLIGVRPSVEGGRGSGVLEMICSLWLVLCFWPFLK
GMFGKGSYGLPWSTISKSAVATVLFVYLCQRIAIK