; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS024905 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS024905
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDNA primase
Genome locationscaffold6:242840..253614
RNA-Seq ExpressionMS024905
SyntenyMS024905
Gene Ontology termsGO:0006269 - DNA replication, synthesis of RNA primer (biological process)
GO:0005658 - alpha DNA polymerase:primase complex (cellular component)
GO:0003896 - DNA primase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039338.1 DNA primase, small subunit [Cucumis melo var. makuwa]9.4e-1882.14Show/hide
Query:  MITEAVENGGGDMEIDGFEQKPEKVVPDGFDVNYLKIYYGKLFPYTDFFKWMSYGN
        M+T AVENGG DM IDG EQKP+K V DGFD NYLKIYYGKLFPY DFFKWMSYGN
Subjt:  MITEAVENGGGDMEIDGFEQKPEKVVPDGFDVNYLKIYYGKLFPYTDFFKWMSYGN
XP_004141619.1 DNA primase small subunit [Cucumis sativus]2.1e-1780.36Show/hide
Query:  MITEAVENGGGDMEIDGFEQKPEKVVPDGFDVNYLKIYYGKLFPYTDFFKWMSYGN
        M+T AVENGG DM IDG EQKP+  V DGFD NYLKIYYGKLFPY DFFKWMSYGN
Subjt:  MITEAVENGGGDMEIDGFEQKPEKVVPDGFDVNYLKIYYGKLFPYTDFFKWMSYGN
XP_008465512.1 PREDICTED: DNA primase small subunit-like [Cucumis melo]9.4e-1882.14Show/hide
Query:  MITEAVENGGGDMEIDGFEQKPEKVVPDGFDVNYLKIYYGKLFPYTDFFKWMSYGN
        M+T AVENGG DM IDG EQKP+K V DGFD NYLKIYYGKLFPY DFFKWMSYGN
Subjt:  MITEAVENGGGDMEIDGFEQKPEKVVPDGFDVNYLKIYYGKLFPYTDFFKWMSYGN
XP_022141779.1 DNA primase small subunit-like [Momordica charantia]3.0e-24100Show/hide
Query:  MITEAVENGGGDMEIDGFEQKPEKVVPDGFDVNYLKIYYGKLFPYTDFFKWMSYGN
        MITEAVENGGGDMEIDGFEQKPEKVVPDGFDVNYLKIYYGKLFPYTDFFKWMSYGN
Subjt:  MITEAVENGGGDMEIDGFEQKPEKVVPDGFDVNYLKIYYGKLFPYTDFFKWMSYGN
XP_022141835.1 DNA primase small subunit-like [Momordica charantia]3.0e-24100Show/hide
Query:  MITEAVENGGGDMEIDGFEQKPEKVVPDGFDVNYLKIYYGKLFPYTDFFKWMSYGN
        MITEAVENGGGDMEIDGFEQKPEKVVPDGFDVNYLKIYYGKLFPYTDFFKWMSYGN
Subjt:  MITEAVENGGGDMEIDGFEQKPEKVVPDGFDVNYLKIYYGKLFPYTDFFKWMSYGN
TrEMBL top hitse value%identityAlignment
A0A0A0KUP7 DNA primase1.0e-1780.36Show/hide
Query:  MITEAVENGGGDMEIDGFEQKPEKVVPDGFDVNYLKIYYGKLFPYTDFFKWMSYGN
        M+T AVENGG DM IDG EQKP+  V DGFD NYLKIYYGKLFPY DFFKWMSYGN
Subjt:  MITEAVENGGGDMEIDGFEQKPEKVVPDGFDVNYLKIYYGKLFPYTDFFKWMSYGN
A0A1S3CQI3 DNA primase small subunit-like4.5e-1882.14Show/hide
Query:  MITEAVENGGGDMEIDGFEQKPEKVVPDGFDVNYLKIYYGKLFPYTDFFKWMSYGN
        M+T AVENGG DM IDG EQKP+K V DGFD NYLKIYYGKLFPY DFFKWMSYGN
Subjt:  MITEAVENGGGDMEIDGFEQKPEKVVPDGFDVNYLKIYYGKLFPYTDFFKWMSYGN
A0A5A7T8Y3 DNA primase4.5e-1882.14Show/hide
Query:  MITEAVENGGGDMEIDGFEQKPEKVVPDGFDVNYLKIYYGKLFPYTDFFKWMSYGN
        M+T AVENGG DM IDG EQKP+K V DGFD NYLKIYYGKLFPY DFFKWMSYGN
Subjt:  MITEAVENGGGDMEIDGFEQKPEKVVPDGFDVNYLKIYYGKLFPYTDFFKWMSYGN
A0A6J1CJS7 DNA primase small subunit-like1.5e-24100Show/hide
Query:  MITEAVENGGGDMEIDGFEQKPEKVVPDGFDVNYLKIYYGKLFPYTDFFKWMSYGN
        MITEAVENGGGDMEIDGFEQKPEKVVPDGFDVNYLKIYYGKLFPYTDFFKWMSYGN
Subjt:  MITEAVENGGGDMEIDGFEQKPEKVVPDGFDVNYLKIYYGKLFPYTDFFKWMSYGN
A0A6J1CKZ3 DNA primase1.5e-24100Show/hide
Query:  MITEAVENGGGDMEIDGFEQKPEKVVPDGFDVNYLKIYYGKLFPYTDFFKWMSYGN
        MITEAVENGGGDMEIDGFEQKPEKVVPDGFDVNYLKIYYGKLFPYTDFFKWMSYGN
Subjt:  MITEAVENGGGDMEIDGFEQKPEKVVPDGFDVNYLKIYYGKLFPYTDFFKWMSYGN
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G41880.1 DNA primases;DNA primases5.0e-0950Show/hide
Query:  MITEAVENGGGDMEIDGFEQKPEKVVPDGFDVNYLKIYYGKLFPYTDFFKWMSYGN
        M  E  E  G DM ID     P+  + + F+V+YL+IYYG LFPYTD  KW+SYG+
Subjt:  MITEAVENGGGDMEIDGFEQKPEKVVPDGFDVNYLKIYYGKLFPYTDFFKWMSYGN

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTACTGAAGCGGTCGAGAATGGAGGAGGCGATATGGAAATTGATGGATTCGAACAGAAGCCTGAGAAAGTTGTGCCCGATGGGTTCGATGTTAACTATCTCAAAAT
TTACTACGGAAAGCTTTTCCCGTATACTGATTTCTTCAAATGGATGTCTTATGGAAATGCGGCGACGTCTTCGCGATTTCCGGCGTCCCACGGCGGCACGACTCACGGAT
CTGCAGCAGATTCCGGCGATTTCTTCTCTGCACGGCGACTGGCGTGTTCCCGACCTGCAGAGCGACTGGAAACCTCGGCCAACGTCGATTTGCGGCGGCCCTCCACGAGC
AGACCCGACGTCCTCCGGCGACCGGCGGCGCGTCTTGGTTCCGGCGGCCTCGTGCGCGACAGCTCCTCCGGCTTTGTTCTGCAGCAACCCACGACCCCTCAACCCTCAAC
GACCCGACAACTCCCGGCCAGCACAAGAAAGCCCTTATTCGGTGTCCCCGCGACCGCCCAGCGTGCTTGGTGGCGTTTTCTGGCCCACGGTGTTAACCCACACCTAACGA
AGTCCGATCCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGATTACTGAAGCGGTCGAGAATGGAGGAGGCGATATGGAAATTGATGGATTCGAACAGAAGCCTGAGAAAGTTGTGCCCGATGGGTTCGATGTTAACTATCTCAAAAT
TTACTACGGAAAGCTTTTCCCGTATACTGATTTCTTCAAATGGATGTCTTATGGAAATGCGGCGACGTCTTCGCGATTTCCGGCGTCCCACGGCGGCACGACTCACGGAT
CTGCAGCAGATTCCGGCGATTTCTTCTCTGCACGGCGACTGGCGTGTTCCCGACCTGCAGAGCGACTGGAAACCTCGGCCAACGTCGATTTGCGGCGGCCCTCCACGAGC
AGACCCGACGTCCTCCGGCGACCGGCGGCGCGTCTTGGTTCCGGCGGCCTCGTGCGCGACAGCTCCTCCGGCTTTGTTCTGCAGCAACCCACGACCCCTCAACCCTCAAC
GACCCGACAACTCCCGGCCAGCACAAGAAAGCCCTTATTCGGTGTCCCCGCGACCGCCCAGCGTGCTTGGTGGCGTTTTCTGGCCCACGGTGTTAACCCACACCTAACGA
AGTCCGATCCGTGA
Protein sequenceShow/hide protein sequence
MITEAVENGGGDMEIDGFEQKPEKVVPDGFDVNYLKIYYGKLFPYTDFFKWMSYGNAATSSRFPASHGGTTHGSAADSGDFFSARRLACSRPAERLETSANVDLRRPSTS
RPDVLRRPAARLGSGGLVRDSSSGFVLQQPTTPQPSTTRQLPASTRKPLFGVPATAQRAWWRFLAHGVNPHLTKSDP