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MS025009 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS025009
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold96:632963..633316
RNA-Seq ExpressionMS025009
SyntenyMS025009
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsIPR025558 - Domain of unknown function DUF4283


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TXG54013.1 hypothetical protein EZV62_019269 [Acer yangbiense]1.0e-1435.71Show/hide
Query:  MKTIWQVHHNTRFEVVRENVFVIQFRSLMEKNRILNSGPWIFDKALLLLVSPSVGDQLDTMAFAHCSFWVQVHSISINCLTRDVALLLGGAISVVEEL-A
        + TIWQ  +    E++  N+F  +F++  ++ RIL  GPW+FDK LL+L   S  +++  + F +  FW+Q+H++ + CL R++ L LGG +  V+E+ A
Subjt:  MKTIWQVHHNTRFEVVRENVFVIQFRSLMEKNRILNSGPWIFDKALLLLVSPSVGDQLDTMAFAHCSFWVQVHSISINCLTRDVALLLGGAISVVEEL-A

Query:  GEGHFLLDWFVR
        GE    +  F+R
Subjt:  GEGHFLLDWFVR

XP_022149484.1 uncharacterized protein LOC111017902 [Momordica charantia]5.1e-2247.06Show/hide
Query:  MKTIWQVHHNTRFEVVRENVFVIQFRSLMEKNRILNSGPWIFDKALLLLVSPSVGDQLDTMAFAHCSFWVQVHSISINCLTRDVALLLGGAISVVEELAG
        MK++W+VH++TRFE +  N++VI F+SL EK+R+L+SGPW F+K+LL+L SP+  +Q   M F  C+FW+Q+H+I   C++ ++A +LG  +  VEE+ G
Subjt:  MKTIWQVHHNTRFEVVRENVFVIQFRSLMEKNRILNSGPWIFDKALLLLVSPSVGDQLDTMAFAHCSFWVQVHSISINCLTRDVALLLGGAISVVEELAG

Query:  EG
        +G
Subjt:  EG

XP_022155933.1 uncharacterized protein LOC111022932 [Momordica charantia]7.6e-1843.27Show/hide
Query:  MKTIWQVHHNTRFEVVRENVFVIQFRSLMEKNRILNSGPWIFDKALLLLVSPSVGDQLDTMAFAHCSFWVQVHSISINCLTRDVALLLGGAISVVEELAG
        MK++W+VH +T  E    N++VI F+S+ EKNR+L SGPW F+ +LL+L SP+  DQ   M F   + W+Q+H I   C+ +D+A  LG  I  VEE+  
Subjt:  MKTIWQVHHNTRFEVVRENVFVIQFRSLMEKNRILNSGPWIFDKALLLLVSPSVGDQLDTMAFAHCSFWVQVHSISINCLTRDVALLLGGAISVVEELAG

Query:  EGHF
         G +
Subjt:  EGHF

XP_022156711.1 uncharacterized protein LOC111023555 [Momordica charantia]7.6e-1839.81Show/hide
Query:  MKTIWQVHHNTRFEVVRENVFVIQFRSLMEKNRILNSGPWIFDKALLLLVSPSVGDQLDTMAFAHCSFWVQVHSISINCLTRDVALLLGGAISVVEELAG
        MK +W++H++TR E    N++VI F+++ EK R+ + GPW FDK+LL+LV  +  ++   +  + C+FWVQ+H I+  C+T+D+A  LG  +  VEE+ G
Subjt:  MKTIWQVHHNTRFEVVRENVFVIQFRSLMEKNRILNSGPWIFDKALLLLVSPSVGDQLDTMAFAHCSFWVQVHSISINCLTRDVALLLGGAISVVEELAG

Query:  EGHFLLDW
           +  DW
Subjt:  EGHFLLDW

XP_022158119.1 uncharacterized protein LOC111024676, partial [Momordica charantia]3.7e-2047.96Show/hide
Query:  MKTIWQVHHNTRFEVVRENVFVIQFRSLMEKNRILNSGPWIFDKALLLLVSPSVGDQLDTMAFAHCSFWVQVHSISINCLTRDVALLLGGAISVVEEL
        MK +W++H +TR E    N++VI F++++EK R+L+SGPW FDK+L +LVSP+  D+   + F  C+FWVQ+H I    LTRD+A LLG  +  VEE+
Subjt:  MKTIWQVHHNTRFEVVRENVFVIQFRSLMEKNRILNSGPWIFDKALLLLVSPSVGDQLDTMAFAHCSFWVQVHSISINCLTRDVALLLGGAISVVEEL

TrEMBL top hitse value%identityAlignment
A0A5C7H9Y2 CCHC-type domain-containing protein5.0e-1535.71Show/hide
Query:  MKTIWQVHHNTRFEVVRENVFVIQFRSLMEKNRILNSGPWIFDKALLLLVSPSVGDQLDTMAFAHCSFWVQVHSISINCLTRDVALLLGGAISVVEEL-A
        + TIWQ  +    E++  N+F  +F++  ++ RIL  GPW+FDK LL+L   S  +++  + F +  FW+Q+H++ + CL R++ L LGG +  V+E+ A
Subjt:  MKTIWQVHHNTRFEVVRENVFVIQFRSLMEKNRILNSGPWIFDKALLLLVSPSVGDQLDTMAFAHCSFWVQVHSISINCLTRDVALLLGGAISVVEEL-A

Query:  GEGHFLLDWFVR
        GE    +  F+R
Subjt:  GEGHFLLDWFVR

A0A6J1D765 uncharacterized protein LOC1110179022.5e-2247.06Show/hide
Query:  MKTIWQVHHNTRFEVVRENVFVIQFRSLMEKNRILNSGPWIFDKALLLLVSPSVGDQLDTMAFAHCSFWVQVHSISINCLTRDVALLLGGAISVVEELAG
        MK++W+VH++TRFE +  N++VI F+SL EK+R+L+SGPW F+K+LL+L SP+  +Q   M F  C+FW+Q+H+I   C++ ++A +LG  +  VEE+ G
Subjt:  MKTIWQVHHNTRFEVVRENVFVIQFRSLMEKNRILNSGPWIFDKALLLLVSPSVGDQLDTMAFAHCSFWVQVHSISINCLTRDVALLLGGAISVVEELAG

Query:  EG
        +G
Subjt:  EG

A0A6J1DP89 uncharacterized protein LOC1110229323.7e-1843.27Show/hide
Query:  MKTIWQVHHNTRFEVVRENVFVIQFRSLMEKNRILNSGPWIFDKALLLLVSPSVGDQLDTMAFAHCSFWVQVHSISINCLTRDVALLLGGAISVVEELAG
        MK++W+VH +T  E    N++VI F+S+ EKNR+L SGPW F+ +LL+L SP+  DQ   M F   + W+Q+H I   C+ +D+A  LG  I  VEE+  
Subjt:  MKTIWQVHHNTRFEVVRENVFVIQFRSLMEKNRILNSGPWIFDKALLLLVSPSVGDQLDTMAFAHCSFWVQVHSISINCLTRDVALLLGGAISVVEELAG

Query:  EGHF
         G +
Subjt:  EGHF

A0A6J1DVS4 uncharacterized protein LOC1110235553.7e-1839.81Show/hide
Query:  MKTIWQVHHNTRFEVVRENVFVIQFRSLMEKNRILNSGPWIFDKALLLLVSPSVGDQLDTMAFAHCSFWVQVHSISINCLTRDVALLLGGAISVVEELAG
        MK +W++H++TR E    N++VI F+++ EK R+ + GPW FDK+LL+LV  +  ++   +  + C+FWVQ+H I+  C+T+D+A  LG  +  VEE+ G
Subjt:  MKTIWQVHHNTRFEVVRENVFVIQFRSLMEKNRILNSGPWIFDKALLLLVSPSVGDQLDTMAFAHCSFWVQVHSISINCLTRDVALLLGGAISVVEELAG

Query:  EGHFLLDW
           +  DW
Subjt:  EGHFLLDW

A0A6J1DYG3 uncharacterized protein LOC1110246761.8e-2047.96Show/hide
Query:  MKTIWQVHHNTRFEVVRENVFVIQFRSLMEKNRILNSGPWIFDKALLLLVSPSVGDQLDTMAFAHCSFWVQVHSISINCLTRDVALLLGGAISVVEEL
        MK +W++H +TR E    N++VI F++++EK R+L+SGPW FDK+L +LVSP+  D+   + F  C+FWVQ+H I    LTRD+A LLG  +  VEE+
Subjt:  MKTIWQVHHNTRFEVVRENVFVIQFRSLMEKNRILNSGPWIFDKALLLLVSPSVGDQLDTMAFAHCSFWVQVHSISINCLTRDVALLLGGAISVVEEL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAACCATTTGGCAGGTGCACCACAATACGCGTTTTGAAGTAGTTCGTGAGAATGTTTTTGTTATTCAATTTCGTTCGTTGATGGAAAAGAATCGGATTTTGAATTC
GGGACCCTGGATATTTGACAAAGCTCTACTACTGTTGGTCTCTCCTTCCGTCGGGGATCAGCTGGACACTATGGCATTTGCCCATTGCTCTTTCTGGGTGCAGGTTCACA
GTATCTCGATTAATTGTTTGACCCGTGATGTGGCTCTGCTACTGGGAGGTGCTATTAGTGTGGTTGAGGAGCTGGCAGGGGAAGGACACTTCTTGTTGGATTGGTTCGTT
CGGTCGTCCTCGTATTCGCATTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAAACCATTTGGCAGGTGCACCACAATACGCGTTTTGAAGTAGTTCGTGAGAATGTTTTTGTTATTCAATTTCGTTCGTTGATGGAAAAGAATCGGATTTTGAATTC
GGGACCCTGGATATTTGACAAAGCTCTACTACTGTTGGTCTCTCCTTCCGTCGGGGATCAGCTGGACACTATGGCATTTGCCCATTGCTCTTTCTGGGTGCAGGTTCACA
GTATCTCGATTAATTGTTTGACCCGTGATGTGGCTCTGCTACTGGGAGGTGCTATTAGTGTGGTTGAGGAGCTGGCAGGGGAAGGACACTTCTTGTTGGATTGGTTCGTT
CGGTCGTCCTCGTATTCGCATTGA
Protein sequenceShow/hide protein sequence
MKTIWQVHHNTRFEVVRENVFVIQFRSLMEKNRILNSGPWIFDKALLLLVSPSVGDQLDTMAFAHCSFWVQVHSISINCLTRDVALLLGGAISVVEELAGEGHFLLDWFV
RSSSYSH