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MS025045 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS025045
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDUF4283 domain-containing protein
Genome locationscaffold247:701036..701841
RNA-Seq ExpressionMS025045
SyntenyMS025045
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
InterPro domainsIPR025558 - Domain of unknown function DUF4283


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039949.1 hypothetical protein E6C27_scaffold122G002290 [Cucumis melo var. makuwa]6.2e-2744.67Show/hide
Query:  ALLKCTSEESARLFASNKGWVTFGPRTLKVELWNPLIHGRFTVVPSYGGWIKFRNIPLHLWSLATFQAIGNCFGGFLDYADANSSLIECTEVAIKVKGNY
        ALL    +E A L   N GW T GP  +K E W+   H    V+PSYGGW +FR IPLH+W+L TF  IG   GGF+D A  + + +E TE  IKVK NY
Subjt:  ALLKCTSEESARLFASNKGWVTFGPRTLKVELWNPLIHGRFTVVPSYGGWIKFRNIPLHLWSLATFQAIGNCFGGFLDYADANSSLIECTEVAIKVKGNY

Query:  CGFILAEVKIVDLD-QTFVAHVSTFQDSSLLVGKRVTVHGSFSPEAAESF
         GF+ A ++I D + Q F+    T  +   L  +  +VHGSF+  AAE F
Subjt:  CGFILAEVKIVDLD-QTFVAHVSTFQDSSLLVGKRVTVHGSFSPEAAESF

KAA0041398.1 hypothetical protein E6C27_scaffold206G00440 [Cucumis melo var. makuwa]2.8e-2743.33Show/hide
Query:  ALLKCTSEESARLFASNKGWVTFGPRTLKVELWNPLIHGRFTVVPSYGGWIKFRNIPLHLWSLATFQAIGNCFGGFLDYADANSSLIECTEVAIKVKGNY
        ALL    ++ A+L   N GW T GP  +K E W+  +H    V+PSYGGW +FR IPLH+W+L TF  IG   GGF+D A  + + IE TE  IKVK NY
Subjt:  ALLKCTSEESARLFASNKGWVTFGPRTLKVELWNPLIHGRFTVVPSYGGWIKFRNIPLHLWSLATFQAIGNCFGGFLDYADANSSLIECTEVAIKVKGNY

Query:  CGFILAEVKIVDLD-QTFVAHVSTFQDSSLLVGKRVTVHGSFSPEAAESF
         GF+ A ++I D +   F+  + T  +   L  +  ++HGSF   AAE+F
Subjt:  CGFILAEVKIVDLD-QTFVAHVSTFQDSSLLVGKRVTVHGSFSPEAAESF

KAA0044557.1 hypothetical protein E6C27_scaffold46G003060 [Cucumis melo var. makuwa]1.1e-2643.33Show/hide
Query:  ALLKCTSEESARLFASNKGWVTFGPRTLKVELWNPLIHGRFTVVPSYGGWIKFRNIPLHLWSLATFQAIGNCFGGFLDYADANSSLIECTEVAIKVKGNY
        ALL    ++ A+L   N GW T GP  +K E W+   H    V+PSYGGW +FR IPLH+W+L TF  IG   GGF+D A  + + IE TE  IKVK NY
Subjt:  ALLKCTSEESARLFASNKGWVTFGPRTLKVELWNPLIHGRFTVVPSYGGWIKFRNIPLHLWSLATFQAIGNCFGGFLDYADANSSLIECTEVAIKVKGNY

Query:  CGFILAEVKIVDLD-QTFVAHVSTFQDSSLLVGKRVTVHGSFSPEAAESF
         GF+ A ++I D +   F+    T  +   L  +  ++HGSF+  AAE+F
Subjt:  CGFILAEVKIVDLD-QTFVAHVSTFQDSSLLVGKRVTVHGSFSPEAAESF

TYK01560.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.2e-3056.36Show/hide
Query:  NKGWVTFGPRTLKVELWNPLIHGRFTVVPSYGGWIKFRNIPLHLWSLATFQAIGNCFGGFLDYADANSSLIECTEVAIKVKGNYCGFILAEVKIVDLDQT
        NKGW T+GP TLK+E WNP IHGR   VPSYGGWIK RN P HLW+   F+ +G+   GF++Y   NSSLI+C EVAIKVKGNYCGF+  E  ++D   +
Subjt:  NKGWVTFGPRTLKVELWNPLIHGRFTVVPSYGGWIKFRNIPLHLWSLATFQAIGNCFGGFLDYADANSSLIECTEVAIKVKGNYCGFILAEVKIVDLDQT

Query:  FVAHVSTFQD
        F+  V++ Q+
Subjt:  FVAHVSTFQD

XP_022149859.1 uncharacterized protein LOC111018186 [Momordica charantia]2.2e-4861.84Show/hide
Query:  ALLKCTSEESARLFASNKGWVTFGPRTLKVELWNPLIHGRFTVVPSYGGWIKFRNIPLHLWSLATFQAIGNCFGGFLDYADANSSLIECTEVAIKVKGNY
        AL+KC S++ A L  +NKGWVTFGP T+K+E WNPL+HGR  + PSYG W+K RNIPLHLWSLATF+AIGN  GGF+DY D NS  IEC +VAIKVK NY
Subjt:  ALLKCTSEESARLFASNKGWVTFGPRTLKVELWNPLIHGRFTVVPSYGGWIKFRNIPLHLWSLATFQAIGNCFGGFLDYADANSSLIECTEVAIKVKGNY

Query:  CGFILAEVKIVDLDQTFVAHVSTFQDSSLLVGKRVTVHGSFSPEAAESFYKG
        CGFI AE+  +D    F A V +F+DS  L  K V +HG FS EAA SF++G
Subjt:  CGFILAEVKIVDLDQTFVAHVSTFQDSSLLVGKRVTVHGSFSPEAAESFYKG

TrEMBL top hitse value%identityAlignment
A0A5A7TEP0 DUF4283 domain-containing protein1.4e-2743.33Show/hide
Query:  ALLKCTSEESARLFASNKGWVTFGPRTLKVELWNPLIHGRFTVVPSYGGWIKFRNIPLHLWSLATFQAIGNCFGGFLDYADANSSLIECTEVAIKVKGNY
        ALL    ++ A+L   N GW T GP  +K E W+  +H    V+PSYGGW +FR IPLH+W+L TF  IG   GGF+D A  + + IE TE  IKVK NY
Subjt:  ALLKCTSEESARLFASNKGWVTFGPRTLKVELWNPLIHGRFTVVPSYGGWIKFRNIPLHLWSLATFQAIGNCFGGFLDYADANSSLIECTEVAIKVKGNY

Query:  CGFILAEVKIVDLD-QTFVAHVSTFQDSSLLVGKRVTVHGSFSPEAAESF
         GF+ A ++I D +   F+  + T  +   L  +  ++HGSF   AAE+F
Subjt:  CGFILAEVKIVDLD-QTFVAHVSTFQDSSLLVGKRVTVHGSFSPEAAESF

A0A5A7TRS9 DUF4283 domain-containing protein5.1e-2743.33Show/hide
Query:  ALLKCTSEESARLFASNKGWVTFGPRTLKVELWNPLIHGRFTVVPSYGGWIKFRNIPLHLWSLATFQAIGNCFGGFLDYADANSSLIECTEVAIKVKGNY
        ALL    ++ A+L   N GW T GP  +K E W+   H    V+PSYGGW +FR IPLH+W+L TF  IG   GGF+D A  + + IE TE  IKVK NY
Subjt:  ALLKCTSEESARLFASNKGWVTFGPRTLKVELWNPLIHGRFTVVPSYGGWIKFRNIPLHLWSLATFQAIGNCFGGFLDYADANSSLIECTEVAIKVKGNY

Query:  CGFILAEVKIVDLD-QTFVAHVSTFQDSSLLVGKRVTVHGSFSPEAAESF
         GF+ A ++I D +   F+    T  +   L  +  ++HGSF+  AAE+F
Subjt:  CGFILAEVKIVDLD-QTFVAHVSTFQDSSLLVGKRVTVHGSFSPEAAESF

A0A5D3BR42 LINE-1 retrotransposable element ORF2 protein5.9e-3156.36Show/hide
Query:  NKGWVTFGPRTLKVELWNPLIHGRFTVVPSYGGWIKFRNIPLHLWSLATFQAIGNCFGGFLDYADANSSLIECTEVAIKVKGNYCGFILAEVKIVDLDQT
        NKGW T+GP TLK+E WNP IHGR   VPSYGGWIK RN P HLW+   F+ +G+   GF++Y   NSSLI+C EVAIKVKGNYCGF+  E  ++D   +
Subjt:  NKGWVTFGPRTLKVELWNPLIHGRFTVVPSYGGWIKFRNIPLHLWSLATFQAIGNCFGGFLDYADANSSLIECTEVAIKVKGNYCGFILAEVKIVDLDQT

Query:  FVAHVSTFQD
        F+  V++ Q+
Subjt:  FVAHVSTFQD

A0A5D3DLT1 DUF4283 domain-containing protein3.0e-2744.67Show/hide
Query:  ALLKCTSEESARLFASNKGWVTFGPRTLKVELWNPLIHGRFTVVPSYGGWIKFRNIPLHLWSLATFQAIGNCFGGFLDYADANSSLIECTEVAIKVKGNY
        ALL    +E A L   N GW T GP  +K E W+   H    V+PSYGGW +FR IPLH+W+L TF  IG   GGF+D A  + + +E TE  IKVK NY
Subjt:  ALLKCTSEESARLFASNKGWVTFGPRTLKVELWNPLIHGRFTVVPSYGGWIKFRNIPLHLWSLATFQAIGNCFGGFLDYADANSSLIECTEVAIKVKGNY

Query:  CGFILAEVKIVDLD-QTFVAHVSTFQDSSLLVGKRVTVHGSFSPEAAESF
         GF+ A ++I D + Q F+    T  +   L  +  +VHGSF+  AAE F
Subjt:  CGFILAEVKIVDLD-QTFVAHVSTFQDSSLLVGKRVTVHGSFSPEAAESF

A0A6J1D6X4 uncharacterized protein LOC1110181861.1e-4861.84Show/hide
Query:  ALLKCTSEESARLFASNKGWVTFGPRTLKVELWNPLIHGRFTVVPSYGGWIKFRNIPLHLWSLATFQAIGNCFGGFLDYADANSSLIECTEVAIKVKGNY
        AL+KC S++ A L  +NKGWVTFGP T+K+E WNPL+HGR  + PSYG W+K RNIPLHLWSLATF+AIGN  GGF+DY D NS  IEC +VAIKVK NY
Subjt:  ALLKCTSEESARLFASNKGWVTFGPRTLKVELWNPLIHGRFTVVPSYGGWIKFRNIPLHLWSLATFQAIGNCFGGFLDYADANSSLIECTEVAIKVKGNY

Query:  CGFILAEVKIVDLDQTFVAHVSTFQDSSLLVGKRVTVHGSFSPEAAESFYKG
        CGFI AE+  +D    F A V +F+DS  L  K V +HG FS EAA SF++G
Subjt:  CGFILAEVKIVDLDQTFVAHVSTFQDSSLLVGKRVTVHGSFSPEAAESFYKG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTTCCAACCTAGCCCTCCTTAAGTGCACTTCTGAAGAATCGGCGAGATTGTTTGCTAGCAATAAAGGCTGGGTCACTTTCGGCCCCAGGACTTTAAAAGTTGAACT
CTGGAATCCGCTAATCCATGGACGTTTTACTGTTGTTCCTTCTTATGGTGGGTGGATCAAGTTTAGGAACATCCCCCTTCATCTTTGGAGCTTGGCTACCTTTCAAGCAA
TTGGGAACTGTTTTGGAGGCTTTTTAGACTATGCAGATGCTAACTCTTCCCTCATTGAATGCACAGAAGTTGCCATTAAAGTGAAGGGGAACTATTGTGGTTTCATCCTA
GCGGAAGTGAAGATTGTTGATCTGGACCAGACTTTTGTTGCCCATGTTAGCACTTTTCAGGATAGCTCGTTGCTCGTCGGAAAGCGAGTGACGGTCCACGGCAGCTTCTC
ACCGGAAGCAGCAGAATCTTTTTACAAAGGAAAGGAAGGAGGTGACAGTACAGGCGATGTTACTCACCCTACTCTTTCATGCTTTGGTGAAAAAAGTACTGCCTTGGTGG
ACCCCACTACTAAGTTGACTGCCCGGGGTACTGTTTTAGAGGAAATTCAAGAAAATGAAAGGCCCAATCAAACGCAAATGTGTGGTACTTTTATGGGTCAAGATAAGAAA
GGGAAGTCTGTCTCTTTCTCCAAAAACAACCCGTTGAGACTTTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTTTCCAACCTAGCCCTCCTTAAGTGCACTTCTGAAGAATCGGCGAGATTGTTTGCTAGCAATAAAGGCTGGGTCACTTTCGGCCCCAGGACTTTAAAAGTTGAACT
CTGGAATCCGCTAATCCATGGACGTTTTACTGTTGTTCCTTCTTATGGTGGGTGGATCAAGTTTAGGAACATCCCCCTTCATCTTTGGAGCTTGGCTACCTTTCAAGCAA
TTGGGAACTGTTTTGGAGGCTTTTTAGACTATGCAGATGCTAACTCTTCCCTCATTGAATGCACAGAAGTTGCCATTAAAGTGAAGGGGAACTATTGTGGTTTCATCCTA
GCGGAAGTGAAGATTGTTGATCTGGACCAGACTTTTGTTGCCCATGTTAGCACTTTTCAGGATAGCTCGTTGCTCGTCGGAAAGCGAGTGACGGTCCACGGCAGCTTCTC
ACCGGAAGCAGCAGAATCTTTTTACAAAGGAAAGGAAGGAGGTGACAGTACAGGCGATGTTACTCACCCTACTCTTTCATGCTTTGGTGAAAAAAGTACTGCCTTGGTGG
ACCCCACTACTAAGTTGACTGCCCGGGGTACTGTTTTAGAGGAAATTCAAGAAAATGAAAGGCCCAATCAAACGCAAATGTGTGGTACTTTTATGGGTCAAGATAAGAAA
GGGAAGTCTGTCTCTTTCTCCAAAAACAACCCGTTGAGACTTTTTTAA
Protein sequenceShow/hide protein sequence
MLSNLALLKCTSEESARLFASNKGWVTFGPRTLKVELWNPLIHGRFTVVPSYGGWIKFRNIPLHLWSLATFQAIGNCFGGFLDYADANSSLIECTEVAIKVKGNYCGFIL
AEVKIVDLDQTFVAHVSTFQDSSLLVGKRVTVHGSFSPEAAESFYKGKEGGDSTGDVTHPTLSCFGEKSTALVDPTTKLTARGTVLEEIQENERPNQTQMCGTFMGQDKK
GKSVSFSKNNPLRLF