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MS025053 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS025053
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionF-box/LRR-repeat protein
Genome locationscaffold123_1:180033..180554
RNA-Seq ExpressionMS025053
SyntenyMS025053
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039262.1 F-box/LRR-repeat protein [Cucumis melo var. makuwa]6.0e-1140.48Show/hide
Query:  RHVGLCSYRETLWI-------HGLEVNN-QSYFWCVKLEGDMFQSCPLLERLVIRGRLFTHGKITAPKLEYLEM----TRSYYYNDWVPVIVLCTPKLAF
        R + L  Y E +W+         LE+ N    F+  + E  M  + PLLERL++RG  F H  I APKLEYLE+     R Y        I LCTP L F
Subjt:  RHVGLCSYRETLWI-------HGLEVNN-QSYFWCVKLEGDMFQSCPLLERLVIRGRLFTHGKITAPKLEYLEM----TRSYYYNDWVPVIVLCTPKLAF

Query:  VKFEGVIPSLFPAHHFPSLHKLEFSL
        VK + ++P L     F SL K+EFSL
Subjt:  VKFEGVIPSLFPAHHFPSLHKLEFSL

KAE8649007.1 hypothetical protein Csa_008094 [Cucumis sativus]4.6e-1140.48Show/hide
Query:  RHVGLCSYRETLWI-------HGLEVNN-QSYFWCVKLEGDMFQSCPLLERLVIRGRLFTHGKITAPKLEYLEM----TRSYYYNDWVPVIVLCTPKLAF
        R + L  Y E +W+         LE+ N  + F+  + E  M    PLLERL++RG  F H  I APKLEYLE+     R Y        I LCTP L F
Subjt:  RHVGLCSYRETLWI-------HGLEVNN-QSYFWCVKLEGDMFQSCPLLERLVIRGRLFTHGKITAPKLEYLEM----TRSYYYNDWVPVIVLCTPKLAF

Query:  VKFEGVIPSLFPAHHFPSLHKLEFSL
        VK + ++P L     F SL K+EFSL
Subjt:  VKFEGVIPSLFPAHHFPSLHKLEFSL

XP_008459622.1 PREDICTED: F-box/LRR-repeat protein At3g26922-like isoform X1 [Cucumis melo]2.3e-1039.68Show/hide
Query:  RHVGLCSYRETLWI-------HGLEVNN-QSYFWCVKLEGDMFQSCPLLERLVIRGRLFTHGKITAPKLEYLEM----TRSYYYNDWVPVIVLCTPKLAF
        R + L  Y E +W+         LE+ N    F+  + E  M    PLLERL++RG  F H  I APKLEYLE+     R Y        I LC+P L F
Subjt:  RHVGLCSYRETLWI-------HGLEVNN-QSYFWCVKLEGDMFQSCPLLERLVIRGRLFTHGKITAPKLEYLEM----TRSYYYNDWVPVIVLCTPKLAF

Query:  VKFEGVIPSLFPAHHFPSLHKLEFSL
        VK + ++P L     F SL K+EFSL
Subjt:  VKFEGVIPSLFPAHHFPSLHKLEFSL

XP_011656097.2 F-box/LRR-repeat protein At3g26922 [Cucumis sativus]4.6e-1140.48Show/hide
Query:  RHVGLCSYRETLWI-------HGLEVNN-QSYFWCVKLEGDMFQSCPLLERLVIRGRLFTHGKITAPKLEYLEM----TRSYYYNDWVPVIVLCTPKLAF
        R + L  Y E +W+         LE+ N  + F+  + E  M    PLLERL++RG  F H  I APKLEYLE+     R Y        I LCTP L F
Subjt:  RHVGLCSYRETLWI-------HGLEVNN-QSYFWCVKLEGDMFQSCPLLERLVIRGRLFTHGKITAPKLEYLEM----TRSYYYNDWVPVIVLCTPKLAF

Query:  VKFEGVIPSLFPAHHFPSLHKLEFSL
        VK + ++P L     F SL K+EFSL
Subjt:  VKFEGVIPSLFPAHHFPSLHKLEFSL

XP_016902420.1 PREDICTED: F-box/LRR-repeat protein At3g26922-like isoform X2 [Cucumis melo]2.3e-1039.68Show/hide
Query:  RHVGLCSYRETLWI-------HGLEVNN-QSYFWCVKLEGDMFQSCPLLERLVIRGRLFTHGKITAPKLEYLEM----TRSYYYNDWVPVIVLCTPKLAF
        R + L  Y E +W+         LE+ N    F+  + E  M    PLLERL++RG  F H  I APKLEYLE+     R Y        I LC+P L F
Subjt:  RHVGLCSYRETLWI-------HGLEVNN-QSYFWCVKLEGDMFQSCPLLERLVIRGRLFTHGKITAPKLEYLEM----TRSYYYNDWVPVIVLCTPKLAF

Query:  VKFEGVIPSLFPAHHFPSLHKLEFSL
        VK + ++P L     F SL K+EFSL
Subjt:  VKFEGVIPSLFPAHHFPSLHKLEFSL

TrEMBL top hitse value%identityAlignment
A0A0A0KSU4 F-box domain-containing protein2.2e-1140.48Show/hide
Query:  RHVGLCSYRETLWI-------HGLEVNN-QSYFWCVKLEGDMFQSCPLLERLVIRGRLFTHGKITAPKLEYLEM----TRSYYYNDWVPVIVLCTPKLAF
        R + L  Y E +W+         LE+ N  + F+  + E  M    PLLERL++RG  F H  I APKLEYLE+     R Y        I LCTP L F
Subjt:  RHVGLCSYRETLWI-------HGLEVNN-QSYFWCVKLEGDMFQSCPLLERLVIRGRLFTHGKITAPKLEYLEM----TRSYYYNDWVPVIVLCTPKLAF

Query:  VKFEGVIPSLFPAHHFPSLHKLEFSL
        VK + ++P L     F SL K+EFSL
Subjt:  VKFEGVIPSLFPAHHFPSLHKLEFSL

A0A1S3CAL9 F-box/LRR-repeat protein At3g26922-like isoform X11.1e-1039.68Show/hide
Query:  RHVGLCSYRETLWI-------HGLEVNN-QSYFWCVKLEGDMFQSCPLLERLVIRGRLFTHGKITAPKLEYLEM----TRSYYYNDWVPVIVLCTPKLAF
        R + L  Y E +W+         LE+ N    F+  + E  M    PLLERL++RG  F H  I APKLEYLE+     R Y        I LC+P L F
Subjt:  RHVGLCSYRETLWI-------HGLEVNN-QSYFWCVKLEGDMFQSCPLLERLVIRGRLFTHGKITAPKLEYLEM----TRSYYYNDWVPVIVLCTPKLAF

Query:  VKFEGVIPSLFPAHHFPSLHKLEFSL
        VK + ++P L     F SL K+EFSL
Subjt:  VKFEGVIPSLFPAHHFPSLHKLEFSL

A0A1S4E367 F-box/LRR-repeat protein At3g26922-like isoform X21.1e-1039.68Show/hide
Query:  RHVGLCSYRETLWI-------HGLEVNN-QSYFWCVKLEGDMFQSCPLLERLVIRGRLFTHGKITAPKLEYLEM----TRSYYYNDWVPVIVLCTPKLAF
        R + L  Y E +W+         LE+ N    F+  + E  M    PLLERL++RG  F H  I APKLEYLE+     R Y        I LC+P L F
Subjt:  RHVGLCSYRETLWI-------HGLEVNN-QSYFWCVKLEGDMFQSCPLLERLVIRGRLFTHGKITAPKLEYLEM----TRSYYYNDWVPVIVLCTPKLAF

Query:  VKFEGVIPSLFPAHHFPSLHKLEFSL
        VK + ++P L     F SL K+EFSL
Subjt:  VKFEGVIPSLFPAHHFPSLHKLEFSL

A0A5D3BMW8 F-box/LRR-repeat protein2.9e-1140.48Show/hide
Query:  RHVGLCSYRETLWI-------HGLEVNN-QSYFWCVKLEGDMFQSCPLLERLVIRGRLFTHGKITAPKLEYLEM----TRSYYYNDWVPVIVLCTPKLAF
        R + L  Y E +W+         LE+ N    F+  + E  M  + PLLERL++RG  F H  I APKLEYLE+     R Y        I LCTP L F
Subjt:  RHVGLCSYRETLWI-------HGLEVNN-QSYFWCVKLEGDMFQSCPLLERLVIRGRLFTHGKITAPKLEYLEM----TRSYYYNDWVPVIVLCTPKLAF

Query:  VKFEGVIPSLFPAHHFPSLHKLEFSL
        VK + ++P L     F SL K+EFSL
Subjt:  VKFEGVIPSLFPAHHFPSLHKLEFSL

A0A6J1CJ18 LOW QUALITY PROTEIN: putative FBD-associated F-box protein At5g568206.9e-0539.29Show/hide
Query:  EGDMFQSCPLLERLVIRGRLFTHGKITAPKLEYLEMTRSYYYNDWVPVIVLCTPKLAFVKFEGVIPSLFPAHHFPSLHKLEFSL
        E +MF  CP LE LV+   LF    I+APKLE LE+  S       P + L  P L  +KF  V+P+L  A  F  +HK+   +
Subjt:  EGDMFQSCPLLERLVIRGRLFTHGKITAPKLEYLEMTRSYYYNDWVPVIVLCTPKLAFVKFEGVIPSLFPAHHFPSLHKLEFSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAATAGAATTTCCGAAGATTCCATTTTCTTCAAACGTTTCTTTGGCTTCGCAGCATCGTACAATGTCCAACAAGTTTGCCTGGCCGGGGGATTTATGGATTTCCCA
GCCTCGTGCTGCAGCTTTACGACATGTCGGTCTGTGCAGCTATCGGGAGACTTTGTGGATACATGGTCTTGAGGTTAACAATCAATCATATTTTTGGTGCGTGAAACTTG
AGGGAGACATGTTTCAGAGCTGCCCACTTCTCGAACGTTTGGTAATACGAGGTCGTCTTTTCACACATGGGAAAATCACTGCTCCAAAACTTGAATATTTGGAAATGACG
AGGTCTTATTATTATAATGATTGGGTTCCAGTGATTGTGTTGTGTACACCAAAGCTGGCGTTTGTCAAATTTGAAGGTGTTATACCATCTTTGTTCCCAGCTCACCATTT
TCCCTCTCTACACAAACTTGAATTCTCTCTCCTCAACTTCGGAAGGCTTGAGGATAAGGTTAAGCTGCAGCGCTTGACTTGA
mRNA sequenceShow/hide mRNA sequence
ATGACAATAGAATTTCCGAAGATTCCATTTTCTTCAAACGTTTCTTTGGCTTCGCAGCATCGTACAATGTCCAACAAGTTTGCCTGGCCGGGGGATTTATGGATTTCCCA
GCCTCGTGCTGCAGCTTTACGACATGTCGGTCTGTGCAGCTATCGGGAGACTTTGTGGATACATGGTCTTGAGGTTAACAATCAATCATATTTTTGGTGCGTGAAACTTG
AGGGAGACATGTTTCAGAGCTGCCCACTTCTCGAACGTTTGGTAATACGAGGTCGTCTTTTCACACATGGGAAAATCACTGCTCCAAAACTTGAATATTTGGAAATGACG
AGGTCTTATTATTATAATGATTGGGTTCCAGTGATTGTGTTGTGTACACCAAAGCTGGCGTTTGTCAAATTTGAAGGTGTTATACCATCTTTGTTCCCAGCTCACCATTT
TCCCTCTCTACACAAACTTGAATTCTCTCTCCTCAACTTCGGAAGGCTTGAGGATAAGGTTAAGCTGCAGCGCTTGACTTGA
Protein sequenceShow/hide protein sequence
MTIEFPKIPFSSNVSLASQHRTMSNKFAWPGDLWISQPRAAALRHVGLCSYRETLWIHGLEVNNQSYFWCVKLEGDMFQSCPLLERLVIRGRLFTHGKITAPKLEYLEMT
RSYYYNDWVPVIVLCTPKLAFVKFEGVIPSLFPAHHFPSLHKLEFSLLNFGRLEDKVKLQRLT