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MS025078 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS025078
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionzf-RVT domain-containing protein
Genome locationscaffold404:642647..643373
RNA-Seq ExpressionMS025078
SyntenyMS025078
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026044.1 hypothetical protein E6C27_scaffold581G00300 [Cucumis melo var. makuwa]2.8e-1143.28Show/hide
Query:  GMESRDNLFFECPFSWEVWSGIIAWTGSSDRVSYWSNELAWVCHISDGKCARHRVRCLAWTSIVFFL
        G+ESRD+LFF CPF  +VWS ++    SS R+ +W  EL+W+CH   GK  R ++ C+ W + ++F+
Subjt:  GMESRDNLFFECPFSWEVWSGIIAWTGSSDRVSYWSNELAWVCHISDGKCARHRVRCLAWTSIVFFL

TYK28099.1 uncharacterized protein E5676_scaffold1467G00020 [Cucumis melo var. makuwa]4.8e-1142.17Show/hide
Query:  EGLFSVSNAWGVLRPAQPLVPWFSVFCAGMESRDNLFFECPFSWEVWSGIIAWTGSSDRVSYWSNELAWVCHISDGKCARHRV
        +G FS+S+AW  +RP    V W      G+ESRD+LFF C F  +VWS ++    SS R+ +W  EL+W+CH   GK  R ++
Subjt:  EGLFSVSNAWGVLRPAQPLVPWFSVFCAGMESRDNLFFECPFSWEVWSGIIAWTGSSDRVSYWSNELAWVCHISDGKCARHRV

XP_022157473.1 uncharacterized protein LOC111024165 [Momordica charantia]2.0e-1749.06Show/hide
Query:  GLFSVSNAWGVLRPAQPLVPWFS----------------------------------------VFCAGMESRDNLFFECPFSWEVWSGIIAWTGSSDRVS
        GLFSVSNA  VLRP +P VPWFS                                        VFC G ES DNLFFECPFSWEVWS +IAW GSS R+S
Subjt:  GLFSVSNAWGVLRPAQPLVPWFS----------------------------------------VFCAGMESRDNLFFECPFSWEVWSGIIAWTGSSDRVS

Query:  YWSNEL
        YWS EL
Subjt:  YWSNEL

XP_022158861.1 uncharacterized protein LOC111025324 [Momordica charantia]1.0e-2142.54Show/hide
Query:  GLFSVSNAWGVLRPAQP----------------------------------------LVPWFSVFCAGMESRDNLFFECPFSWEVWSGIIAWTGSSDRVS
        GLFSVS+ WG+LRP +P                                        LVP   VFCAG+ESRD+LF +CP+S  VW+G+I+W GSS RVS
Subjt:  GLFSVSNAWGVLRPAQP----------------------------------------LVPWFSVFCAGMESRDNLFFECPFSWEVWSGIIAWTGSSDRVS

Query:  YWSNELAWVCHISDGKCARHRVRCLAWTSIVFFL
        YWS EL W+CH++ G  +R  V  LAWT  V  L
Subjt:  YWSNELAWVCHISDGKCARHRVRCLAWTSIVFFL

XP_031737043.1 uncharacterized protein LOC116402131 [Cucumis sativus]2.5e-1242.86Show/hide
Query:  VPWFSVFCAG-MESRDNLFFECPFSWEVWSGIIAWTGSSDRVSYWSNELAWVCHISDGKCARHRVRCLAWTSIVFFL
        +P   + C G  ESRD+LFF CPF WE+WS I+ +  SS R+ YW  EL+W+C+   GK  R ++  L W + ++F+
Subjt:  VPWFSVFCAG-MESRDNLFFECPFSWEVWSGIIAWTGSSDRVSYWSNELAWVCHISDGKCARHRVRCLAWTSIVFFL

TrEMBL top hitse value%identityAlignment
A0A5A7SK23 Uncharacterized protein1.4e-1143.28Show/hide
Query:  GMESRDNLFFECPFSWEVWSGIIAWTGSSDRVSYWSNELAWVCHISDGKCARHRVRCLAWTSIVFFL
        G+ESRD+LFF CPF  +VWS ++    SS R+ +W  EL+W+CH   GK  R ++ C+ W + ++F+
Subjt:  GMESRDNLFFECPFSWEVWSGIIAWTGSSDRVSYWSNELAWVCHISDGKCARHRVRCLAWTSIVFFL

A0A5A7UP65 Reverse transcriptase2.6e-1040.26Show/hide
Query:  VPWFSVFC-AGMESRDNLFFECPFSWEVWSGIIAWTGSSDRVSYWSNELAWVCHISDGKCARHRVRCLAWTSIVFFL
        VP   + C  GMESRD+LFF CPF  +VWS ++    SS R+ +W  EL+W+CH    K  R ++  + W + ++F+
Subjt:  VPWFSVFC-AGMESRDNLFFECPFSWEVWSGIIAWTGSSDRVSYWSNELAWVCHISDGKCARHRVRCLAWTSIVFFL

A0A5D3DXE4 Reverse transcriptase domain-containing protein2.3e-1142.17Show/hide
Query:  EGLFSVSNAWGVLRPAQPLVPWFSVFCAGMESRDNLFFECPFSWEVWSGIIAWTGSSDRVSYWSNELAWVCHISDGKCARHRV
        +G FS+S+AW  +RP    V W      G+ESRD+LFF C F  +VWS ++    SS R+ +W  EL+W+CH   GK  R ++
Subjt:  EGLFSVSNAWGVLRPAQPLVPWFSVFCAGMESRDNLFFECPFSWEVWSGIIAWTGSSDRVSYWSNELAWVCHISDGKCARHRV

A0A6J1DTG0 uncharacterized protein LOC1110241659.7e-1849.06Show/hide
Query:  GLFSVSNAWGVLRPAQPLVPWFS----------------------------------------VFCAGMESRDNLFFECPFSWEVWSGIIAWTGSSDRVS
        GLFSVSNA  VLRP +P VPWFS                                        VFC G ES DNLFFECPFSWEVWS +IAW GSS R+S
Subjt:  GLFSVSNAWGVLRPAQPLVPWFS----------------------------------------VFCAGMESRDNLFFECPFSWEVWSGIIAWTGSSDRVS

Query:  YWSNEL
        YWS EL
Subjt:  YWSNEL

A0A6J1E271 uncharacterized protein LOC1110253245.0e-2242.54Show/hide
Query:  GLFSVSNAWGVLRPAQP----------------------------------------LVPWFSVFCAGMESRDNLFFECPFSWEVWSGIIAWTGSSDRVS
        GLFSVS+ WG+LRP +P                                        LVP   VFCAG+ESRD+LF +CP+S  VW+G+I+W GSS RVS
Subjt:  GLFSVSNAWGVLRPAQP----------------------------------------LVPWFSVFCAGMESRDNLFFECPFSWEVWSGIIAWTGSSDRVS

Query:  YWSNELAWVCHISDGKCARHRVRCLAWTSIVFFL
        YWS EL W+CH++ G  +R  V  LAWT  V  L
Subjt:  YWSNELAWVCHISDGKCARHRVRCLAWTSIVFFL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCAGTGTTGTTTTTTGTGGCATAACGCTTGGCTTAAGGGGGTCCGATTTATGTGAGGGTCTCTTCTCGGTGTCGAATGCATGGGGTGTGTTGCGACCGGCCCAGCC
TCTTGTTCCTTGGTTTTCTGTGTTTTGTGCTGGTATGGAGTCTCGAGACAATCTATTCTTTGAGTGCCCCTTTAGTTGGGAGGTATGGTCTGGCATAATTGCTTGGACTG
GTTCTTCTGACCGGGTTTCATACTGGTCTAATGAGCTTGCTTGGGTTTGTCACATTAGTGACGGGAAGTGTGCTCGTCATCGTGTGCGGTGTTTGGCATGGACTTCAATT
GTTTTTTTTTTATCTGGAAGGAGCATAATGCTAGAGTTCAAGCGAGTTGAGTGGGTAGGTCACCTTCTATCCTCCTGTGTGCCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTCAGTGTTGTTTTTTGTGGCATAACGCTTGGCTTAAGGGGGTCCGATTTATGTGAGGGTCTCTTCTCGGTGTCGAATGCATGGGGTGTGTTGCGACCGGCCCAGCC
TCTTGTTCCTTGGTTTTCTGTGTTTTGTGCTGGTATGGAGTCTCGAGACAATCTATTCTTTGAGTGCCCCTTTAGTTGGGAGGTATGGTCTGGCATAATTGCTTGGACTG
GTTCTTCTGACCGGGTTTCATACTGGTCTAATGAGCTTGCTTGGGTTTGTCACATTAGTGACGGGAAGTGTGCTCGTCATCGTGTGCGGTGTTTGGCATGGACTTCAATT
GTTTTTTTTTTATCTGGAAGGAGCATAATGCTAGAGTTCAAGCGAGTTGAGTGGGTAGGTCACCTTCTATCCTCCTGTGTGCCTTGA
Protein sequenceShow/hide protein sequence
MVSVVFCGITLGLRGSDLCEGLFSVSNAWGVLRPAQPLVPWFSVFCAGMESRDNLFFECPFSWEVWSGIIAWTGSSDRVSYWSNELAWVCHISDGKCARHRVRCLAWTSI
VFFLSGRSIMLEFKRVEWVGHLLSSCVP