; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS025089 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS025089
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionsyntaxin-41-like
Genome locationscaffold404:1473319..1475004
RNA-Seq ExpressionMS025089
SyntenyMS025089
Gene Ontology termsGO:0006886 - intracellular protein transport (biological process)
GO:0006906 - vesicle fusion (biological process)
GO:0048278 - vesicle docking (biological process)
GO:0012505 - endomembrane system (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0031201 - SNARE complex (cellular component)
GO:0000149 - SNARE binding (molecular function)
GO:0005484 - SNAP receptor activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599198.1 Syntaxin-43, partial [Cucurbita argyrosperma subsp. sororia]5.9e-1078.72Show/hide
Query:  MVSRNQTLLFRKYRDALRSVRAPTNSSPVSASPPTSSSTGGPMIELL
        M SRN+TL+FRKYRDALRSVR PT SSP SASP TSS TGGP+IEL+
Subjt:  MVSRNQTLLFRKYRDALRSVRAPTNSSPVSASPPTSSSTGGPMIELL

KAG7030133.1 Syntaxin-43, partial [Cucurbita argyrosperma subsp. argyrosperma]5.9e-1078.72Show/hide
Query:  MVSRNQTLLFRKYRDALRSVRAPTNSSPVSASPPTSSSTGGPMIELL
        M SRN+TL+FRKYRDALRSVR PT SSP SASP TSS TGGP+IEL+
Subjt:  MVSRNQTLLFRKYRDALRSVRAPTNSSPVSASPPTSSSTGGPMIELL

XP_022156434.1 syntaxin-41-like [Momordica charantia]1.2e-1082.98Show/hide
Query:  MVSRNQTLLFRKYRDALRSVRAPTNSSPVSASPPTSSSTGGPMIELL
        M SRN+TLLFRKYRDALRSVRAPT+SSPVSASP TSS  GGP+IEL+
Subjt:  MVSRNQTLLFRKYRDALRSVRAPTNSSPVSASPPTSSSTGGPMIELL

XP_023522691.1 syntaxin-41-like, partial [Cucurbita pepo subsp. pepo]5.9e-1078.72Show/hide
Query:  MVSRNQTLLFRKYRDALRSVRAPTNSSPVSASPPTSSSTGGPMIELL
        M SRN+TL+FRKYRDALRSVR PT SSP SASP TSS TGGP+IEL+
Subjt:  MVSRNQTLLFRKYRDALRSVRAPTNSSPVSASPPTSSSTGGPMIELL

XP_038889829.1 syntaxin-43 [Benincasa hispida]4.5e-1078.72Show/hide
Query:  MVSRNQTLLFRKYRDALRSVRAPTNSSPVSASPPTSSSTGGPMIELL
        M SRN+TL+FRKYRDALRSVR PT+SSPVSASP TSS+ GGP+IEL+
Subjt:  MVSRNQTLLFRKYRDALRSVRAPTNSSPVSASPPTSSSTGGPMIELL

TrEMBL top hitse value%identityAlignment
A0A6J1DTG3 syntaxin-41-like5.8e-1182.98Show/hide
Query:  MVSRNQTLLFRKYRDALRSVRAPTNSSPVSASPPTSSSTGGPMIELL
        M SRN+TLLFRKYRDALRSVRAPT+SSPVSASP TSS  GGP+IEL+
Subjt:  MVSRNQTLLFRKYRDALRSVRAPTNSSPVSASPPTSSSTGGPMIELL

A0A6J1FBL2 syntaxin-41-like5.4e-0974.47Show/hide
Query:  MVSRNQTLLFRKYRDALRSVRAPTNSSPVSASPPTSSSTGGPMIELL
        M SRN+TL+FRKYRDALRSVRAPT+SSP   SP TSS  GGP+IEL+
Subjt:  MVSRNQTLLFRKYRDALRSVRAPTNSSPVSASPPTSSSTGGPMIELL

A0A6J1G576 syntaxin-43-like2.9e-1078.72Show/hide
Query:  MVSRNQTLLFRKYRDALRSVRAPTNSSPVSASPPTSSSTGGPMIELL
        M SRN+TL+FRKYRDALRSVR PT SSP SASP TSS TGGP+IEL+
Subjt:  MVSRNQTLLFRKYRDALRSVRAPTNSSPVSASPPTSSSTGGPMIELL

A0A6J1HMS0 syntaxin-41-like1.9e-0976.6Show/hide
Query:  MVSRNQTLLFRKYRDALRSVRAPTNSSPVSASPPTSSSTGGPMIELL
        M SRN+TL+FRKYRDALRSVRAPT+SSP   SP TSSS GGP+IEL+
Subjt:  MVSRNQTLLFRKYRDALRSVRAPTNSSPVSASPPTSSSTGGPMIELL

A0A6J1KJM9 syntaxin-43-like2.9e-1078.72Show/hide
Query:  MVSRNQTLLFRKYRDALRSVRAPTNSSPVSASPPTSSSTGGPMIELL
        M SRN+TL+FRKYRDALRSVR PT SSP SASP TSS TGGP+IEL+
Subjt:  MVSRNQTLLFRKYRDALRSVRAPTNSSPVSASPPTSSSTGGPMIELL

SwissProt top hitse value%identityAlignment
O65359 Syntaxin-411.3e-0456.52Show/hide
Query:  MVSRNQTLLFRKYRDALRSVRAPTNSSPVSASPPTSSSTGGPMIEL
        M +RN+TLLFRKYR++LRSVRAP +SS ++    T S   GP+IE+
Subjt:  MVSRNQTLLFRKYRDALRSVRAPTNSSPVSASPPTSSSTGGPMIEL

Q9SUJ1 Syntaxin-431.3e-0454.9Show/hide
Query:  MVSRNQTLLFRKYRDALRSVRAPTNSSPVSASPPTSSSTG-----GPMIEL
        M +RN+TLLFRKYR++LRSVRAP  SS  S     +S TG     GP+IE+
Subjt:  MVSRNQTLLFRKYRDALRSVRAPTNSSPVSASPPTSSSTG-----GPMIEL

Arabidopsis top hitse value%identityAlignment
AT3G05710.1 syntaxin of plants 439.4e-0654.9Show/hide
Query:  MVSRNQTLLFRKYRDALRSVRAPTNSSPVSASPPTSSSTG-----GPMIEL
        M +RN+TLLFRKYR++LRSVRAP  SS  S     +S TG     GP+IE+
Subjt:  MVSRNQTLLFRKYRDALRSVRAPTNSSPVSASPPTSSSTG-----GPMIEL

AT3G05710.2 syntaxin of plants 439.4e-0654.9Show/hide
Query:  MVSRNQTLLFRKYRDALRSVRAPTNSSPVSASPPTSSSTG-----GPMIEL
        M +RN+TLLFRKYR++LRSVRAP  SS  S     +S TG     GP+IE+
Subjt:  MVSRNQTLLFRKYRDALRSVRAPTNSSPVSASPPTSSSTG-----GPMIEL

AT4G02195.1 syntaxin of plants 425.2e-0437.5Show/hide
Query:  MVSRNQTLLFRKYRDALRSVRAPTNSSPVSASPPTSSSTGGPMIELLDIHDDKATHEENAVVES
        M +RN+T ++RK+RDA +S RAP + S        S S GGP+IE++     ++ H   A + S
Subjt:  MVSRNQTLLFRKYRDALRSVRAPTNSSPVSASPPTSSSTGGPMIELLDIHDDKATHEENAVVES

AT5G26980.1 syntaxin of plants 419.4e-0656.52Show/hide
Query:  MVSRNQTLLFRKYRDALRSVRAPTNSSPVSASPPTSSSTGGPMIEL
        M +RN+TLLFRKYR++LRSVRAP +SS ++    T S   GP+IE+
Subjt:  MVSRNQTLLFRKYRDALRSVRAPTNSSPVSASPPTSSSTGGPMIEL

AT5G26980.2 syntaxin of plants 419.4e-0656.52Show/hide
Query:  MVSRNQTLLFRKYRDALRSVRAPTNSSPVSASPPTSSSTGGPMIEL
        M +RN+TLLFRKYR++LRSVRAP +SS ++    T S   GP+IE+
Subjt:  MVSRNQTLLFRKYRDALRSVRAPTNSSPVSASPPTSSSTGGPMIEL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGTCGAGGAATCAGACTTTGCTTTTTAGGAAATACAGGGACGCCTTGAGAAGTGTGAGGGCTCCTACCAACTCTTCGCCAGTTTCGGCATCGCCACCGACTAGTTC
TAGCACTGGTGGTCCGATGATTGAATTGCTTGATATACACGACGACAAAGCTACTCATGAAGAGAATGCAGTAGTGGAAAGTAAAGTTTCGGCTCTTAAGCAAACTCCAA
AGGCTGCTAAAACTTCACAAAACGCCAAGAAGAGGAGGAAGAATCTCATCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGTCGAGGAATCAGACTTTGCTTTTTAGGAAATACAGGGACGCCTTGAGAAGTGTGAGGGCTCCTACCAACTCTTCGCCAGTTTCGGCATCGCCACCGACTAGTTC
TAGCACTGGTGGTCCGATGATTGAATTGCTTGATATACACGACGACAAAGCTACTCATGAAGAGAATGCAGTAGTGGAAAGTAAAGTTTCGGCTCTTAAGCAAACTCCAA
AGGCTGCTAAAACTTCACAAAACGCCAAGAAGAGGAGGAAGAATCTCATCTGA
Protein sequenceShow/hide protein sequence
MVSRNQTLLFRKYRDALRSVRAPTNSSPVSASPPTSSSTGGPMIELLDIHDDKATHEENAVVESKVSALKQTPKAAKTSQNAKKRRKNLI