; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS025150 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS025150
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold379:292920..294149
RNA-Seq ExpressionMS025150
SyntenyMS025150
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3535647.1 hypothetical protein F2Q69_00023590 [Brassica cretica]1.4e-1234.51Show/hide
Query:  ELVAGGVGPTTQYEPSKIAQEPFIASILAVDLPKGFNGPRLDKYDELADPMDHATSXHDAMRQAGY----NNVEQCRGFSGTLIGPVRQWFQDLPPHSVR
        E + G   P  +  P   A  PF+  I +V++P+ F+ P++  YD   DP DH       M         +    C+GF  TLIGP  QW+ +LP  S+ 
Subjt:  ELVAGGVGPTTQYEPSKIAQEPFIASILAVDLPKGFNGPRLDKYDELADPMDHATSXHDAMRQAGY----NNVEQCRGFSGTLIGPVRQWFQDLPPHSVR

Query:  SYQDLASKFVDQF
        S+  L+ KFV+QF
Subjt:  SYQDLASKFVDQF

XP_013709250.1 uncharacterized protein LOC106412927 [Brassica napus]2.8e-1328.65Show/hide
Query:  PTILHLDLDTSIEMSSRPSKSRTGLVGEDLDRVKEEILNRVKN------ELVAGGVGPTTQYEPSKIAQEPFIASILAVDLPKGFNGPRLDKYDELADPM
        P I  L+   S     + +  R   +   +    E+IL++  +      E + G   P  +  P   A  PF+  I +V++P+ F+ P +  YD   DP 
Subjt:  PTILHLDLDTSIEMSSRPSKSRTGLVGEDLDRVKEEILNRVKN------ELVAGGVGPTTQYEPSKIAQEPFIASILAVDLPKGFNGPRLDKYDELADPM

Query:  DHATSXHDAMRQAGY----NNVEQCRGFSGTLIGPVRQWFQDLPPHSVRSYQDLASKFVDQFHYSCTNKRT
        DH T     M              C+GF  TL GP  QW+ +LP  S+ S+  L+ KFV+QF  S + ++T
Subjt:  DHATSXHDAMRQAGY----NNVEQCRGFSGTLIGPVRQWFQDLPPHSVRSYQDLASKFVDQFHYSCTNKRT

XP_022891790.1 uncharacterized protein LOC111406633 [Olea europaea var. sylvestris]8.2e-1333.83Show/hide
Query:  DLDRVKEEILNRVKNELVAGGVGPTTQYEPSKIAQEPFIASILAVDLPKGFNGPRLDKYDELADPMDHATSXHDAMRQAGYNNVEQCRGFSGTLIGPVRQ
        DL+R  EEI ++  ++ ++       Q     + ++PF   I+AV LPKGF  P ++ YD + DP+DH  +  D MR     +   CR F  TL    R 
Subjt:  DLDRVKEEILNRVKNELVAGGVGPTTQYEPSKIAQEPFIASILAVDLPKGFNGPRLDKYDELADPMDHATSXHDAMRQAGYNNVEQCRGFSGTLIGPVRQ

Query:  WFQDLPPHSVRSYQDLASKFVDQFHYSCTNKRT
        W   L PHS++S+ +L+  FV  F  S   ++T
Subjt:  WFQDLPPHSVRSYQDLASKFVDQFHYSCTNKRT

XP_022892087.1 uncharacterized protein LOC111406966 [Olea europaea var. sylvestris]2.8e-1334.59Show/hide
Query:  DLDRVKEEILNRVKNELVAGGVGPTTQYEPSKIAQEPFIASILAVDLPKGFNGPRLDKYDELADPMDHATSXHDAMRQAGYNNVEQCRGFSGTLIGPVRQ
        DL+R  EEI+++  ++ ++       Q     + ++PF   I+AV LPKGF  P ++ YD + DP+DH  +  D MR     NV  CR F  TL    R 
Subjt:  DLDRVKEEILNRVKNELVAGGVGPTTQYEPSKIAQEPFIASILAVDLPKGFNGPRLDKYDELADPMDHATSXHDAMRQAGYNNVEQCRGFSGTLIGPVRQ

Query:  WFQDLPPHSVRSYQDLASKFVDQFHYSCTNKRT
        W   L P S++S+ +L+  FV  F  S   ++T
Subjt:  WFQDLPPHSVRSYQDLASKFVDQFHYSCTNKRT

XP_030958983.1 uncharacterized protein LOC115980931 [Quercus lobata]4.3e-1433.13Show/hide
Query:  EMSSRPSKSRT-------GLVGEDLDRVKEEI--LNRVKNELVAGGVGPTTQYEPSKIAQEPFIASILAVDLPKGFNGPRLDKYDELADPMDHATSXHDA
        +M SR  +  T       G     +  +KEE+  + RV  E+           +       PF ASI    LP  F  P LD YDE  DP DH  +    
Subjt:  EMSSRPSKSRT-------GLVGEDLDRVKEEI--LNRVKNELVAGGVGPTTQYEPSKIAQEPFIASILAVDLPKGFNGPRLDKYDELADPMDHATSXHDA

Query:  MRQAGYNNVEQCRGFSGTLIGPVRQWFQDLPPHSVRSYQDLASKFVDQFHYSCTNKRTKAHFSSIK
        M   G  +   CR F  TL GP R WF  +PP+SV S+Q+L+  FV+ F     +KR+ +   +IK
Subjt:  MRQAGYNNVEQCRGFSGTLIGPVRQWFQDLPPHSVRSYQDLASKFVDQFHYSCTNKRTKAHFSSIK

TrEMBL top hitse value%identityAlignment
A0A3N6S7E0 Retrotrans_gag domain-containing protein (Fragment)1.5e-1229.17Show/hide
Query:  DLDTSIEMSSRPSK---SRTGLVGEDLDRVKEEILNRVKN------ELVAGGVGPTTQYEPSKIAQEPFIASILAVDLPKGFNGPRLDKYDELADPMDHA
        DL+ S +    P K    R   +   +    E+I +++ +      E + G   P  +  P   A  PF+  I +V++P+ F+ P +  YD   DP DH 
Subjt:  DLDTSIEMSSRPSK---SRTGLVGEDLDRVKEEILNRVKN------ELVAGGVGPTTQYEPSKIAQEPFIASILAVDLPKGFNGPRLDKYDELADPMDHA

Query:  TSXHDAMRQAGY----NNVEQCRGFSGTLIGPVRQWFQDLPPHSVRSYQDLASKFVDQFHYSCTNKRT
              M              C GF  TLIGP  QW+ +LP  S+ S+  L++KFV+QF  S + ++T
Subjt:  TSXHDAMRQAGY----NNVEQCRGFSGTLIGPVRQWFQDLPPHSVRSYQDLASKFVDQFHYSCTNKRT

A0A3N6TXP6 Uncharacterized protein8.8e-1334.21Show/hide
Query:  PTTQYEPSKIAQEPFIASILAVDLPKGFNGPRLDKYDELADPMDHATSXHDAMRQAGY----NNVEQCRGFSGTLIGPVRQWFQDLPPHSVRSYQDLASK
        P  +  P   A  PF+  I++V++P+ F+ P +  YD   DP DH       M              C+GF  TLIGP  QW+ +LP  S+ S+  L+ K
Subjt:  PTTQYEPSKIAQEPFIASILAVDLPKGFNGPRLDKYDELADPMDHATSXHDAMRQAGY----NNVEQCRGFSGTLIGPVRQWFQDLPPHSVRSYQDLASK

Query:  FVDQFHYSCTNKRT
        FV+QF  S + ++T
Subjt:  FVDQFHYSCTNKRT

A0A444Z0F8 Peptidase A2 domain-containing protein8.8e-1339.82Show/hide
Query:  TQYEPSKIAQEPFIASILAVDLPKGFNGPRLDKYDELADPMDHATSXHDAMRQAGYNNVEQCRGFSGTLIGPVRQWFQDLPPHSVRSYQDLASKFVDQFH
        T+ E + +   PF   IL   LPKGF+ P   KYD   DP +H T+    M   G  +  +CR FS TL GP  +WF  LP  S+ S+ D++ KF+ QF 
Subjt:  TQYEPSKIAQEPFIASILAVDLPKGFNGPRLDKYDELADPMDHATSXHDAMRQAGYNNVEQCRGFSGTLIGPVRQWFQDLPPHSVRSYQDLASKFVDQFH

Query:  YSCTNKRTKAHFS
           T + TKA  S
Subjt:  YSCTNKRTKAHFS

A0A444Z0J8 Peptidase A2 domain-containing protein8.8e-1339.82Show/hide
Query:  TQYEPSKIAQEPFIASILAVDLPKGFNGPRLDKYDELADPMDHATSXHDAMRQAGYNNVEQCRGFSGTLIGPVRQWFQDLPPHSVRSYQDLASKFVDQFH
        T+ E + +   PF   IL   LPKGF+ P   KYD   DP +H T+    M   G  +  +CR FS TL GP  +WF  LP  S+ S+ D++ KF+ QF 
Subjt:  TQYEPSKIAQEPFIASILAVDLPKGFNGPRLDKYDELADPMDHATSXHDAMRQAGYNNVEQCRGFSGTLIGPVRQWFQDLPPHSVRSYQDLASKFVDQFH

Query:  YSCTNKRTKAHFS
           T + TKA  S
Subjt:  YSCTNKRTKAHFS

A0A6P6VM68 uncharacterized protein LOC1137243372.0e-1228.41Show/hide
Query:  SGGSFSSQATEKPKTRNLRLLFPSGVASSSTRI----LFGTACHIIPTL-AIRPYQKRRKRGVVGDGDPLTSLGIPEGLRDLWDKLTKSCSRCGPTILHL
        +GGS   Q+   P         P G  +   RI    L       +PT  AI  Y + +  G +G G   +  G  E      +   K   R  PT  H+
Subjt:  SGGSFSSQATEKPKTRNLRLLFPSGVASSSTRI----LFGTACHIIPTL-AIRPYQKRRKRGVVGDGDPLTSLGIPEGLRDLWDKLTKSCSRCGPTILHL

Query:  DLDTSIEMSSRPSKSRTGLVGEDLDRVKEEILNRVKNEL-VAGGVGPTTQYEPSKIAQEPFIASILAVDLPKGFNGPRLDKYDELADPMDHATSXHDAMR
        D+       SR          E + R  ++ L+  K +L V   +      E  K    PF+  I    LP  F  P +  YD   DP D   +    MR
Subjt:  DLDTSIEMSSRPSKSRTGLVGEDLDRVKEEILNRVKNEL-VAGGVGPTTQYEPSKIAQEPFIASILAVDLPKGFNGPRLDKYDELADPMDHATSXHDAMR

Query:  QAGYNNVEQCRGFSGTLIGPVRQWFQDLPPHSVRSYQDLASKFVDQFHYSCTNKRTKAHFSSIK
             N  +C+ F   L G  RQWFQ LPP S+RS+  LA  F  QF  S    ++ AH  +I+
Subjt:  QAGYNNVEQCRGFSGTLIGPVRQWFQDLPPHSVRSYQDLASKFVDQFHYSCTNKRTKAHFSSIK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATATGTAAAAGGAAACGAGGAGGCAAGCCCCCCATCTTCTGCATATCTTGCTCATCCAATATGGCATGAATCATCGAACCTGCACTCAGGTGGTTCATTTTCAAG
TCAAGCTACTGAGAAGCCAAAAACAAGAAATTTGAGGCTTCTATTCCCCAGTGGAGTTGCCAGCAGTAGCACCCGCATTTTGTTTGGCACCGCTTGCCACATCATCCCGA
CTTTGGCCATAAGACCCTATCAAAAGAGGAGAAAAAGGGGGGTGGTCGGAGACGGCGACCCCCTAACATCCTTAGGGATTCCCGAAGGATTGAGAGACCTCTGGGATAAG
CTCACCAAAAGCTGCTCCCGATGTGGTCCAACGATCCTTCACTTGGATTTGGATACAAGCATTGAAATGTCGAGTAGGCCTAGCAAGTCCCGAACCGGGCTCGTCGGAGA
AGATCTAGATCGGGTCAAAGAAGAGATCTTGAATCGTGTAAAAAACGAACTCGTAGCCGGGGGTGTTGGCCCCACCACGCAATACGAACCCTCCAAGATCGCTCAGGAGC
CCTTCATAGCCAGCATCTTAGCCGTAGATCTGCCAAAGGGGTTCAATGGCCCCCGATTGGACAAGTACGACGAATTGGCAGACCCCATGGACCATGCCACATCGTAACAC
GATGCGATGCGGCAGGCGGGGTACAATAATGTCGAACAGTGCAGGGGTTTCTCTGGAACCCTCATCGGACCCGTTCGGCAATGGTTCCAGGATTTGCCTCCGCATTCGGT
TAGGAGCTACCAGGACCTAGCAAGCAAGTTCGTAGACCAGTTCCATTACTCCTGCACCAACAAGCGAACGAAAGCTCATTTCTCCTCGATCAAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCATATGTAAAAGGAAACGAGGAGGCAAGCCCCCCATCTTCTGCATATCTTGCTCATCCAATATGGCATGAATCATCGAACCTGCACTCAGGTGGTTCATTTTCAAG
TCAAGCTACTGAGAAGCCAAAAACAAGAAATTTGAGGCTTCTATTCCCCAGTGGAGTTGCCAGCAGTAGCACCCGCATTTTGTTTGGCACCGCTTGCCACATCATCCCGA
CTTTGGCCATAAGACCCTATCAAAAGAGGAGAAAAAGGGGGGTGGTCGGAGACGGCGACCCCCTAACATCCTTAGGGATTCCCGAAGGATTGAGAGACCTCTGGGATAAG
CTCACCAAAAGCTGCTCCCGATGTGGTCCAACGATCCTTCACTTGGATTTGGATACAAGCATTGAAATGTCGAGTAGGCCTAGCAAGTCCCGAACCGGGCTCGTCGGAGA
AGATCTAGATCGGGTCAAAGAAGAGATCTTGAATCGTGTAAAAAACGAACTCGTAGCCGGGGGTGTTGGCCCCACCACGCAATACGAACCCTCCAAGATCGCTCAGGAGC
CCTTCATAGCCAGCATCTTAGCCGTAGATCTGCCAAAGGGGTTCAATGGCCCCCGATTGGACAAGTACGACGAATTGGCAGACCCCATGGACCATGCCACATCGTAACAC
GATGCGATGCGGCAGGCGGGGTACAATAATGTCGAACAGTGCAGGGGTTTCTCTGGAACCCTCATCGGACCCGTTCGGCAATGGTTCCAGGATTTGCCTCCGCATTCGGT
TAGGAGCTACCAGGACCTAGCAAGCAAGTTCGTAGACCAGTTCCATTACTCCTGCACCAACAAGCGAACGAAAGCTCATTTCTCCTCGATCAAGTAG
Protein sequenceShow/hide protein sequence
MAYVKGNEEASPPSSAYLAHPIWHESSNLHSGGSFSSQATEKPKTRNLRLLFPSGVASSSTRILFGTACHIIPTLAIRPYQKRRKRGVVGDGDPLTSLGIPEGLRDLWDK
LTKSCSRCGPTILHLDLDTSIEMSSRPSKSRTGLVGEDLDRVKEEILNRVKNELVAGGVGPTTQYEPSKIAQEPFIASILAVDLPKGFNGPRLDKYDELADPMDHATSUH
DAMRQAGYNNVEQCRGFSGTLIGPVRQWFQDLPPHSVRSYQDLASKFVDQFHYSCTNKRTKAHFSSIK