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MS025154 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS025154
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold60:74935..77098
RNA-Seq ExpressionMS025154
SyntenyMS025154
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PRQ34728.1 hypothetical protein RchiOBHm_Chr5g0072311 [Rosa chinensis]2.0e-0434.83Show/hide
Query:  GLLLASEAGFRLILLESDFLRCFRFLTQDLEDLSKVGCLLTEIRRRCSLLGLIRFTFTDREGKTVAHKLAQMVAVRHLDCIWLEENLIV
        GLLL    G   + +E+D +     L ++ EDLS+VGC++ + +   S L         RE   VAH+L  + +V  LD  WLEE L++
Subjt:  GLLLASEAGFRLILLESDFLRCFRFLTQDLEDLSKVGCLLTEIRRRCSLLGLIRFTFTDREGKTVAHKLAQMVAVRHLDCIWLEENLIV

XP_010687479.1 PREDICTED: uncharacterized protein LOC104901585 [Beta vulgaris subsp. vulgaris]1.1e-0538.37Show/hide
Query:  RGLLLASEAGFRLILLESDFLRCFRFLTQDLEDLSKVGCLLTEIRRRCSLLGLIRFTFTDREGKTVAHKLAQMVAVRHLDCIWLEE
        RGL +A EAGFR ++LE D L+ F +L+++  + S  G ++ +I+R       + F+ T R+G  VAH+LA+M        +WLEE
Subjt:  RGLLLASEAGFRLILLESDFLRCFRFLTQDLEDLSKVGCLLTEIRRRCSLLGLIRFTFTDREGKTVAHKLAQMVAVRHLDCIWLEE

XP_021725926.1 uncharacterized protein LOC110693110 [Chenopodium quinoa]2.4e-0537.89Show/hide
Query:  LHRGLLLASEAGFRLILLESDFLRCFRFLTQDLEDLSKVGCLLTEIRRRCSLLGLIRFTFTDREGKTVAHKLAQMVAVRHLDCIWLEENLIVAVG
        L + LL A EAGFR ++LE+D L+ F  + + +  LS  G ++++I R  S      F+F  R+GK VAH LA++ +      +WLEE L+  +G
Subjt:  LHRGLLLASEAGFRLILLESDFLRCFRFLTQDLEDLSKVGCLLTEIRRRCSLLGLIRFTFTDREGKTVAHKLAQMVAVRHLDCIWLEENLIVAVG

XP_022150944.1 uncharacterized protein LOC111018973 [Momordica charantia]3.1e-0539.42Show/hide
Query:  LHRGLLLASEAGFRLILLESDFLRCFRFLTQDLEDLSKVGCLLTEIRR-RCSLLGLIRFTFTDREGKTVAHKLAQMVAVRHLDCIWLEE-----NLIVAV
        ++ G+LLA EAGF    +E+D LR F  LT D  D S+VG L + I+    S    + F+FT R G   AH LAQ+        IW+EE     + ++AV
Subjt:  LHRGLLLASEAGFRLILLESDFLRCFRFLTQDLEDLSKVGCLLTEIRR-RCSLLGLIRFTFTDREGKTVAHKLAQMVAVRHLDCIWLEE-----NLIVAV

Query:  GLRS
          RS
Subjt:  GLRS

XP_023919081.1 uncharacterized protein LOC112030645 [Quercus suber]1.5e-0436.9Show/hide
Query:  LLLASEAGFRLILLESDFLRCFRFLTQDLEDLSKVGCLLTEIRRRCSLLGLIRFTFTDREGKTVAHKLAQMVAVRHLDCIWLEE
        L  AS+ GF+  ++E+D L   + L +D E LS VG +L EIRR+ +    + ++   REG  VAHKLA+         +W+E+
Subjt:  LLLASEAGFRLILLESDFLRCFRFLTQDLEDLSKVGCLLTEIRRRCSLLGLIRFTFTDREGKTVAHKLAQMVAVRHLDCIWLEE

TrEMBL top hitse value%identityAlignment
A0A1R3I426 Uncharacterized protein2.8e-0434.57Show/hide
Query:  ASEAGFRLILLESDFLRCFRFLTQDLEDLSKVGCLLTEIRRRCSLLGLIRFTFTDREGKTVAHKLAQMVAVRHLDCIWLEE
        + + GF+ ++LE D L   + L+  L+DLS +G  + EI+   SL     F+   R+G T AH LA        + IW+EE
Subjt:  ASEAGFRLILLESDFLRCFRFLTQDLEDLSKVGCLLTEIRRRCSLLGLIRFTFTDREGKTVAHKLAQMVAVRHLDCIWLEE

A0A1U8P454 uncharacterized protein LOC1079548278.2e-0433.04Show/hide
Query:  MLHRGLLLASEAGFRLILLESDFLRCFRFLTQDLEDLSKVGCLLTEIRRRCSLLGLIRFTFTDREGKTVAHKLAQMVAVRHLDCIWLEENLIVAVGLRSS
        +LH G+  ASE GFR ++ ESD       +    ++ S+   L  ++          RF F  REG +VAH +A+    R  DC W+E+ L+ A  L +S
Subjt:  MLHRGLLLASEAGFRLILLESDFLRCFRFLTQDLEDLSKVGCLLTEIRRRCSLLGLIRFTFTDREGKTVAHKLAQMVAVRHLDCIWLEENLIVAVGLRSS

Query:  AATARGDQRSCR
              D+RS R
Subjt:  AATARGDQRSCR

A0A2P6QKM3 RNase H domain-containing protein9.6e-0534.83Show/hide
Query:  GLLLASEAGFRLILLESDFLRCFRFLTQDLEDLSKVGCLLTEIRRRCSLLGLIRFTFTDREGKTVAHKLAQMVAVRHLDCIWLEENLIV
        GLLL    G   + +E+D +     L ++ EDLS+VGC++ + +   S L         RE   VAH+L  + +V  LD  WLEE L++
Subjt:  GLLLASEAGFRLILLESDFLRCFRFLTQDLEDLSKVGCLLTEIRRRCSLLGLIRFTFTDREGKTVAHKLAQMVAVRHLDCIWLEENLIV

A0A6A2WM26 Uncharacterized protein8.2e-0438.37Show/hide
Query:  RGLLLASEAGFRLILLESDFLRCFRFLTQDLEDLSKVGCLLTEIRRRCSLLGLIRFTFTDREGKTVAHKLAQMVAVRHLDCIWLEE
        + L  A++ GF  I+LE D     + L  D  DLS++  L+ E+RRR   L   RF FT R G   A  LA   +V   D  W+EE
Subjt:  RGLLLASEAGFRLILLESDFLRCFRFLTQDLEDLSKVGCLLTEIRRRCSLLGLIRFTFTDREGKTVAHKLAQMVAVRHLDCIWLEE

A0A6J1DBJ7 uncharacterized protein LOC1110189731.5e-0539.42Show/hide
Query:  LHRGLLLASEAGFRLILLESDFLRCFRFLTQDLEDLSKVGCLLTEIRR-RCSLLGLIRFTFTDREGKTVAHKLAQMVAVRHLDCIWLEE-----NLIVAV
        ++ G+LLA EAGF    +E+D LR F  LT D  D S+VG L + I+    S    + F+FT R G   AH LAQ+        IW+EE     + ++AV
Subjt:  LHRGLLLASEAGFRLILLESDFLRCFRFLTQDLEDLSKVGCLLTEIRR-RCSLLGLIRFTFTDREGKTVAHKLAQMVAVRHLDCIWLEE-----NLIVAV

Query:  GLRS
          RS
Subjt:  GLRS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTCATCGTGGCCTTCTACTAGCGAGTGAGGCGGGTTTTCGACTCATTCTCCTTGAGTCGGACTTTCTCCGATGTTTCCGATTTCTTACTCAGGACCTTGAGGATTT
GTCTAAGGTGGGGTGCCTCCTTACTGAGATTCGCCGACGTTGTTCTCTGTTGGGTTTGATTCGTTTCACCTTCACAGACCGTGAAGGCAAAACAGTGGCTCATAAATTGG
CGCAAATGGTTGCTGTTCGGCATTTGGATTGCATTTGGCTTGAAGAGAATCTGATCGTCGCTGTTGGTCTGAGGTCGTCGGCCGCCACTGCTCGTGGAGATCAAAGGTCG
TGTAGATCTGCGCCACTACTCGTAGAAGATTGTTACCGAATTTGGTTTGCACGCAGCTGGTCATCGGTGTCCATGGAGAAGAAGGTCTTGAGTCATGCAATGTCGGTCCG
TCAAAAATCTACTGCAACACCATCGGTTATGCTGGCGCTGGAGTTCGTGGCCGCCGAAGGGTTTTGCCCTGCCGTTAGAGTTCATGGTTGCCGCTGGACCTCATGGACGC
CATGA
mRNA sequenceShow/hide mRNA sequence
ATGCTTCATCGTGGCCTTCTACTAGCGAGTGAGGCGGGTTTTCGACTCATTCTCCTTGAGTCGGACTTTCTCCGATGTTTCCGATTTCTTACTCAGGACCTTGAGGATTT
GTCTAAGGTGGGGTGCCTCCTTACTGAGATTCGCCGACGTTGTTCTCTGTTGGGTTTGATTCGTTTCACCTTCACAGACCGTGAAGGCAAAACAGTGGCTCATAAATTGG
CGCAAATGGTTGCTGTTCGGCATTTGGATTGCATTTGGCTTGAAGAGAATCTGATCGTCGCTGTTGGTCTGAGGTCGTCGGCCGCCACTGCTCGTGGAGATCAAAGGTCG
TGTAGATCTGCGCCACTACTCGTAGAAGATTGTTACCGAATTTGGTTTGCACGCAGCTGGTCATCGGTGTCCATGGAGAAGAAGGTCTTGAGTCATGCAATGTCGGTCCG
TCAAAAATCTACTGCAACACCATCGGTTATGCTGGCGCTGGAGTTCGTGGCCGCCGAAGGGTTTTGCCCTGCCGTTAGAGTTCATGGTTGCCGCTGGACCTCATGGACGC
CATGA
Protein sequenceShow/hide protein sequence
MLHRGLLLASEAGFRLILLESDFLRCFRFLTQDLEDLSKVGCLLTEIRRRCSLLGLIRFTFTDREGKTVAHKLAQMVAVRHLDCIWLEENLIVAVGLRSSAATARGDQRS
CRSAPLLVEDCYRIWFARSWSSVSMEKKVLSHAMSVRQKSTATPSVMLALEFVAAEGFCPAVRVHGCRWTSWTP