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MS025300 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS025300
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Genome locationscaffold305:147054..147581
RNA-Seq ExpressionMS025300
SyntenyMS025300
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022131661.1 uncharacterized protein LOC111004786 [Momordica charantia]6.3e-0823.16Show/hide
Query:  SFATVWEAIGAQLTGEDLEMGSVVCRSIWNDRNQITSNREPWSKEARCEWIRNYFESYQRTIFRRKCISTERDHP-----------TRLDYYSERCCVQR
        SF  +W  +  +L  +  ++ +    +IW DRN         +   RC WI +YF++Y +    ++    +   P           + +   S+  C   
Subjt:  SFATVWEAIGAQLTGEDLEMGSVVCRSIWNDRNQITSNREPWSKEARCEWIRNYFESYQRTIFRRKCISTERDHP-----------TRLDYYSERCCVQR

Query:  RSGLG----PH--KIFCAEAKFLDIGLSPFYAELQAIKEALQSALRMNFKLILIQSNCLAAVNLLHGECEYRNETMV
         +GLG     H   +  A++ FL + L+P +AE++ I EAL+ A   ++  ++++S+C  A+ L+ G+     E ++
Subjt:  RSGLG----PH--KIFCAEAKFLDIGLSPFYAELQAIKEALQSALRMNFKLILIQSNCLAAVNLLHGECEYRNETMV
XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]2.0e-0923.78Show/hide
Query:  SFATVWEAIGAQLTGEDLEMGSVVCRSIWNDRNQITSNREPWSKEARCEWIRNYFESYQRTIFRRKCISTERDHPTRLDYY-----------SERCCVQR
        SF  +W ++  QL  +DL + ++    IWNDRN +   ++    E +CEW+  + +S+ +         T+ +H   + Y+           ++  C   
Subjt:  SFATVWEAIGAQLTGEDLEMGSVVCRSIWNDRNQITSNREPWSKEARCEWIRNYFESYQRTIFRRKCISTERDHPTRLDYY-----------SERCCVQR

Query:  RSGLG------PHKIFCAEAKFLDIGLSPFYAELQAIKEALQSALRMNFKLILIQSNCLAAVNLLHGECEYRNETMVWYSDIKEL
         +  G         +  A +  +   LSP  AE++ I E L+ A   NF  + ++S+ L A+ L+  E   R +   W  +I+ L
Subjt:  RSGLG------PHKIFCAEAKFLDIGLSPFYAELQAIKEALQSALRMNFKLILIQSNCLAAVNLLHGECEYRNETMVWYSDIKEL
TrEMBL top hitse value%identityAlignment
A0A6J1BQ49 uncharacterized protein LOC1110047863.0e-0823.16Show/hide
Query:  SFATVWEAIGAQLTGEDLEMGSVVCRSIWNDRNQITSNREPWSKEARCEWIRNYFESYQRTIFRRKCISTERDHP-----------TRLDYYSERCCVQR
        SF  +W  +  +L  +  ++ +    +IW DRN         +   RC WI +YF++Y +    ++    +   P           + +   S+  C   
Subjt:  SFATVWEAIGAQLTGEDLEMGSVVCRSIWNDRNQITSNREPWSKEARCEWIRNYFESYQRTIFRRKCISTERDHP-----------TRLDYYSERCCVQR

Query:  RSGLG----PH--KIFCAEAKFLDIGLSPFYAELQAIKEALQSALRMNFKLILIQSNCLAAVNLLHGECEYRNETMV
         +GLG     H   +  A++ FL + L+P +AE++ I EAL+ A   ++  ++++S+C  A+ L+ G+     E ++
Subjt:  RSGLG----PH--KIFCAEAKFLDIGLSPFYAELQAIKEALQSALRMNFKLILIQSNCLAAVNLLHGECEYRNETMV
A0A6J1DX30 uncharacterized protein LOC1110248749.5e-1023.78Show/hide
Query:  SFATVWEAIGAQLTGEDLEMGSVVCRSIWNDRNQITSNREPWSKEARCEWIRNYFESYQRTIFRRKCISTERDHPTRLDYY-----------SERCCVQR
        SF  +W ++  QL  +DL + ++    IWNDRN +   ++    E +CEW+  + +S+ +         T+ +H   + Y+           ++  C   
Subjt:  SFATVWEAIGAQLTGEDLEMGSVVCRSIWNDRNQITSNREPWSKEARCEWIRNYFESYQRTIFRRKCISTERDHPTRLDYY-----------SERCCVQR

Query:  RSGLG------PHKIFCAEAKFLDIGLSPFYAELQAIKEALQSALRMNFKLILIQSNCLAAVNLLHGECEYRNETMVWYSDIKEL
         +  G         +  A +  +   LSP  AE++ I E L+ A   NF  + ++S+ L A+ L+  E   R +   W  +I+ L
Subjt:  RSGLG------PHKIFCAEAKFLDIGLSPFYAELQAIKEALQSALRMNFKLILIQSNCLAAVNLLHGECEYRNETMVWYSDIKEL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGTTCCGTCAAGTTTTGCTACGGTATGGGAGGCGATAGGAGCTCAATTGACAGGGGAAGATCTGGAAATGGGTTCGGTCGTCTGCCGGTCCATTTGGAATGATAG
AAATCAAATTACTTCAAATCGAGAGCCATGGAGTAAGGAAGCCAGATGCGAATGGATTCGTAATTATTTTGAATCTTACCAAAGAACGATATTTCGAAGGAAGTGCATCT
CAACAGAGCGTGACCATCCCACCAGATTGGATTATTATTCAGAGCGATGCTGCGTGCAACGAAGGTCGGGTCTAGGGCCGCACAAAATATTCTGTGCTGAAGCCAAATTC
CTTGATATCGGCCTTTCCCCTTTCTATGCAGAGTTGCAAGCGATTAAGGAAGCCCTTCAATCGGCATTAAGGATGAACTTCAAACTGATTTTGATTCAATCGAATTGTCT
TGCGGCAGTCAATCTTCTACACGGGGAGTGTGAATACAGAAATGAAACAATGGTTTGGTACTCGGACATAAAGGAGTTGAAGATTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGAGTTCCGTCAAGTTTTGCTACGGTATGGGAGGCGATAGGAGCTCAATTGACAGGGGAAGATCTGGAAATGGGTTCGGTCGTCTGCCGGTCCATTTGGAATGATAG
AAATCAAATTACTTCAAATCGAGAGCCATGGAGTAAGGAAGCCAGATGCGAATGGATTCGTAATTATTTTGAATCTTACCAAAGAACGATATTTCGAAGGAAGTGCATCT
CAACAGAGCGTGACCATCCCACCAGATTGGATTATTATTCAGAGCGATGCTGCGTGCAACGAAGGTCGGGTCTAGGGCCGCACAAAATATTCTGTGCTGAAGCCAAATTC
CTTGATATCGGCCTTTCCCCTTTCTATGCAGAGTTGCAAGCGATTAAGGAAGCCCTTCAATCGGCATTAAGGATGAACTTCAAACTGATTTTGATTCAATCGAATTGTCT
TGCGGCAGTCAATCTTCTACACGGGGAGTGTGAATACAGAAATGAAACAATGGTTTGGTACTCGGACATAAAGGAGTTGAAGATTTAA
Protein sequenceShow/hide protein sequence
MGVPSSFATVWEAIGAQLTGEDLEMGSVVCRSIWNDRNQITSNREPWSKEARCEWIRNYFESYQRTIFRRKCISTERDHPTRLDYYSERCCVQRRSGLGPHKIFCAEAKF
LDIGLSPFYAELQAIKEALQSALRMNFKLILIQSNCLAAVNLLHGECEYRNETMVWYSDIKELKI