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MS025309 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS025309
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description60S acidic ribosomal protein P3
Genome locationscaffold25:564777..565717
RNA-Seq ExpressionMS025309
SyntenyMS025309
Gene Ontology termsGO:0006414 - translational elongation (biological process)
GO:0022626 - cytosolic ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR044252 - 60S acidic ribosomal protein P3-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KCW80893.1 hypothetical protein EUGRSUZ_C02261 [Eucalyptus grandis]1.7e-4184.3Show/hide
Query:  MGVFTFVCRNSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGGAAAAAPAGGAAPAAE-AP
        MGVFTFVCR+SG EWTAKQ SGDLE  AAST+ELQRKLVQ+A+A DSSGGVQSSFS ++P+SAVFQVIIGGGGGGGFI GGGAAAAAPAGGAAPAAE AP
Subjt:  MGVFTFVCRNSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGGAAAAAPAGGAAPAAE-AP

Query:  AEKKEEEKEESDDDLGLSLFD
        AE+K+EEKEESDDD+G SLFD
Subjt:  AEKKEEEKEESDDDLGLSLFD

XP_008451467.1 PREDICTED: 60S acidic ribosomal protein P3-2 [Cucumis melo]1.0e-4186.07Show/hide
Query:  MGVFTFVCRNSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGGAAAAAPAGGAAP-AAEAP
        MGVFTFVCR+SG +WTA QYSGDLEGSA STYELQRKLVQ+AL+VDSSGGVQSSFS+I+PTSAVFQVI+GGGGGGGFI  GG AAAAPAGG AP AAEAP
Subjt:  MGVFTFVCRNSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGGAAAAAPAGGAAP-AAEAP

Query:  AEKKEEEKEESDD-DLGLSLFD
        AEKKEE KEESDD DLGLSLFD
Subjt:  AEKKEEEKEESDD-DLGLSLFD

XP_022153281.1 60S acidic ribosomal protein P3-2 [Momordica charantia]1.7e-5298.33Show/hide
Query:  MGVFTFVCRNSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGGAAAAAPAGGAAPAAEAPA
        MGVFTFVCR+SGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGGAAAAAP+GGAAPAAEAPA
Subjt:  MGVFTFVCRNSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGGAAAAAPAGGAAPAAEAPA

Query:  EKKEEEKEESDDDLGLSLFD
        EKKEEEKEESDDDLGLSLFD
Subjt:  EKKEEEKEESDDDLGLSLFD

XP_030461857.1 60S acidic ribosomal protein P3 [Syzygium oleosum]2.3e-4184.3Show/hide
Query:  MGVFTFVCRNSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGGAAAAAPAGGAAPAAEA-P
        MGVFTFVCR+SG EWTAKQ SGDLE SAAS +ELQRKLVQ+A+A DSSGGVQSSFS ++P+SAVFQVIIGGGGGGGFI GGGAAAAAPAGGAAPAAEA P
Subjt:  MGVFTFVCRNSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGGAAAAAPAGGAAPAAEA-P

Query:  AEKKEEEKEESDDDLGLSLFD
        AE+K+EEKEESDDD+G SLFD
Subjt:  AEKKEEEKEESDDDLGLSLFD

XP_038889531.1 60S acidic ribosomal protein P3-2 [Benincasa hispida]1.1e-4386.89Show/hide
Query:  MGVFTFVCRNSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGGAAAAAPAGGAAP-AAEAP
        MGVFTFVCR+SG +WTA QYSGDLEGSA STYELQRKLVQ+AL+VDSSGGVQSSFS+I+PTSAVFQVI+GGGGGGGFI GGG AAAAPAGG AP AAEAP
Subjt:  MGVFTFVCRNSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGGAAAAAPAGGAAP-AAEAP

Query:  AEKKEEEKEESDD-DLGLSLFD
        AEKKEE KEESDD DLGLSLFD
Subjt:  AEKKEEEKEESDD-DLGLSLFD

TrEMBL top hitse value%identityAlignment
A0A059CSI3 Uncharacterized protein8.4e-4284.3Show/hide
Query:  MGVFTFVCRNSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGGAAAAAPAGGAAPAAE-AP
        MGVFTFVCR+SG EWTAKQ SGDLE  AAST+ELQRKLVQ+A+A DSSGGVQSSFS ++P+SAVFQVIIGGGGGGGFI GGGAAAAAPAGGAAPAAE AP
Subjt:  MGVFTFVCRNSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGGAAAAAPAGGAAPAAE-AP

Query:  AEKKEEEKEESDDDLGLSLFD
        AE+K+EEKEESDDD+G SLFD
Subjt:  AEKKEEEKEESDDDLGLSLFD

A0A0A0LJB2 Uncharacterized protein1.1e-4185.25Show/hide
Query:  MGVFTFVCRNSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGGAAAAAPAGGAAP-AAEAP
        MGVFTFVCR+SG +WTA QYSGDLEGSA STYELQRKLVQ+AL+VDSSGGVQSSFS+I+P+SAVFQVI+GGG GGGF +GGG AAAAPAGGAAP AAEAP
Subjt:  MGVFTFVCRNSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGGAAAAAPAGGAAP-AAEAP

Query:  AEKKEEEKEESDD-DLGLSLFD
        AEKKEE KEESDD DLGLSLFD
Subjt:  AEKKEEEKEESDD-DLGLSLFD

A0A1S3BRK9 60S acidic ribosomal protein P3-24.9e-4286.07Show/hide
Query:  MGVFTFVCRNSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGGAAAAAPAGGAAP-AAEAP
        MGVFTFVCR+SG +WTA QYSGDLEGSA STYELQRKLVQ+AL+VDSSGGVQSSFS+I+PTSAVFQVI+GGGGGGGFI  GG AAAAPAGG AP AAEAP
Subjt:  MGVFTFVCRNSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGGAAAAAPAGGAAP-AAEAP

Query:  AEKKEEEKEESDD-DLGLSLFD
        AEKKEE KEESDD DLGLSLFD
Subjt:  AEKKEEEKEESDD-DLGLSLFD

A0A5D3BNN6 60S acidic ribosomal protein P3-24.9e-4286.07Show/hide
Query:  MGVFTFVCRNSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGGAAAAAPAGGAAP-AAEAP
        MGVFTFVCR+SG +WTA QYSGDLEGSA STYELQRKLVQ+AL+VDSSGGVQSSFS+I+PTSAVFQVI+GGGGGGGFI  GG AAAAPAGG AP AAEAP
Subjt:  MGVFTFVCRNSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGGAAAAAPAGGAAP-AAEAP

Query:  AEKKEEEKEESDD-DLGLSLFD
        AEKKEE KEESDD DLGLSLFD
Subjt:  AEKKEEEKEESDD-DLGLSLFD

A0A6J1DK62 60S acidic ribosomal protein P3-28.1e-5398.33Show/hide
Query:  MGVFTFVCRNSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGGAAAAAPAGGAAPAAEAPA
        MGVFTFVCR+SGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGGAAAAAP+GGAAPAAEAPA
Subjt:  MGVFTFVCRNSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGGAAAAAPAGGAAPAAEAPA

Query:  EKKEEEKEESDDDLGLSLFD
        EKKEEEKEESDDDLGLSLFD
Subjt:  EKKEEEKEESDDDLGLSLFD

SwissProt top hitse value%identityAlignment
O24413 60S acidic ribosomal protein P34.0e-3368.85Show/hide
Query:  MGVFTFVCRNSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGG-GGGGGFISGGGAAAAAPAGGAAPAAEAP
        MGV+TFVCRN+G EWTAKQ+SG++E SAA+ YELQR+LV  A A DS  GVQSSFS ++P+SAVFQVI+G  GGG   +SGGG   AA +GGA  AAEAP
Subjt:  MGVFTFVCRNSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGG-GGGGGFISGGGAAAAAPAGGAAPAAEAP

Query:  -AEKKEEEKEESDDDLGLSLFD
          EKKEEEKEESDDD+G SLFD
Subjt:  -AEKKEEEKEESDDDLGLSLFD

P56724 60S acidic ribosomal protein P31.4e-3370.83Show/hide
Query:  MGVFTFVCRNSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGGAAAAAPAGGAAPAAEAPA
        MGV+TFVCR+SG EWTAKQ  G+LE SAA+ YELQR+LV  A A DS+ GVQSSFS +SP+SAVFQVIIG  GGG  I GGGAAA A +GGAA  A    
Subjt:  MGVFTFVCRNSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGGAAAAAPAGGAAPAAEAPA

Query:  EKKEEEKEESDDDLGLSLFD
        EKKEEEKEES+DDLG SLFD
Subjt:  EKKEEEKEESDDDLGLSLFD

Q93572 60S acidic ribosomal protein P02.7e-0578.38Show/hide
Query:  AAAAPAGGAAPAAEAPAEKKEEEKEESDDDLGLSLFD
        AAAAPA  AAPAA APA KKEE KEESDDD+G  LFD
Subjt:  AAAAPAGGAAPAAEAPAEKKEEEKEESDDDLGLSLFD

Q9LVC9 60S acidic ribosomal protein P3-22.3e-3669.75Show/hide
Query:  MGVFTFVCRNSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGGAAAAAPAGGAAPAAEAPA
        MGVF+FVC++ G EWTAKQ+ GDLE SA+STY+LQRKLVQTAL+ DSSGGVQSSFS +SPTSAVF V+IGGGGGGGF +GGGAAA    GG A AA    
Subjt:  MGVFTFVCRNSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGGAAAAAPAGGAAPAAEAPA

Query:  EKKEEEKEESDDDLGLSLF
        EKK+EE EE + D G  LF
Subjt:  EKKEEEKEESDDDLGLSLF

Q9SVZ6 60S acidic ribosomal protein P3-14.8e-3467.77Show/hide
Query:  MGVFTFVCRNSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGGAAAAAPAGGAAPAAEAPA
        MGVFTFVC+N G  W+AKQ+ G+LE SA+STYELQRKLVQ +L+ DSSGGVQSSFS +SPTSAVFQVI+GGGGGGGF +GG   AA+  GGA  AA AP 
Subjt:  MGVFTFVCRNSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGGAAAAAPAGGAAPAAEAPA

Query:  --EKKEEEKEESDDDLGLSLF
          EKK+EE EE + D G  LF
Subjt:  --EKKEEEKEESDDDLGLSLF

Arabidopsis top hitse value%identityAlignment
AT4G00810.1 60S acidic ribosomal protein family1.6e-0558.33Show/hide
Query:  TSAVFQVIIGGGGGGGFISGGGAAAAAPAGGAAPAAEAPAEKKEEEKEESDDDLGLSLFD
        T  +  V  GGGGGG  +S   AAA A AGGAA AA A  EKK+E  EESD DLG  LFD
Subjt:  TSAVFQVIIGGGGGGGFISGGGAAAAAPAGGAAPAAEAPAEKKEEEKEESDDDLGLSLFD

AT4G25890.1 60S acidic ribosomal protein family3.4e-3567.77Show/hide
Query:  MGVFTFVCRNSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGGAAAAAPAGGAAPAAEAPA
        MGVFTFVC+N G  W+AKQ+ G+LE SA+STYELQRKLVQ +L+ DSSGGVQSSFS +SPTSAVFQVI+GGGGGGGF +GG   AA+  GGA  AA AP 
Subjt:  MGVFTFVCRNSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGGAAAAAPAGGAAPAAEAPA

Query:  --EKKEEEKEESDDDLGLSLF
          EKK+EE EE + D G  LF
Subjt:  --EKKEEEKEESDDDLGLSLF

AT5G57290.1 60S acidic ribosomal protein family1.6e-3769.75Show/hide
Query:  MGVFTFVCRNSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGGAAAAAPAGGAAPAAEAPA
        MGVF+FVC++ G EWTAKQ+ GDLE SA+STY+LQRKLVQTAL+ DSSGGVQSSFS +SPTSAVF V+IGGGGGGGF +GGGAAA    GG A AA    
Subjt:  MGVFTFVCRNSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGGAAAAAPAGGAAPAAEAPA

Query:  EKKEEEKEESDDDLGLSLF
        EKK+EE EE + D G  LF
Subjt:  EKKEEEKEESDDDLGLSLF

AT5G57290.2 60S acidic ribosomal protein family1.9e-3078.05Show/hide
Query:  MGVFTFVCRNSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGG
        MGVF+FVC++ G EWTAKQ+ GDLE SA+STY+LQRKLVQTAL+ DSSGGVQSSFS +SPTSAVF V+IGGGGGGGF +GGG
Subjt:  MGVFTFVCRNSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGG

AT5G57290.3 60S acidic ribosomal protein family3.1e-3669.75Show/hide
Query:  MGVFTFVCRNSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGGAAAAAPAGGAAPAAEAPA
        MGVF+FVC++ G EWTAKQ+ GDLE SA+STY+LQRKLVQTAL+ DSSGGVQSSFS +SPTSAVF V+IGGGGGGGF +GGGAAA    GG A AA    
Subjt:  MGVFTFVCRNSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGGAAAAAPAGGAAPAAEAPA

Query:  EKKEEEKEESDDDLGLSLF
        EKK+EE EE + D G  LF
Subjt:  EKKEEEKEESDDDLGLSLF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGTTTTCACCTTCGTTTGCCGGAACTCCGGTGCCGAGTGGACCGCCAAGCAGTACTCCGGCGACCTCGAAGGCTCCGCTGCCTCCACCTATGAGCTCCAGAGGAA
GCTCGTCCAGACTGCTCTCGCCGTCGACTCCTCCGGTGGTGTTCAGTCCTCTTTCTCTTACATCTCCCCCACTTCCGCCGTTTTCCAGGTGATCATTGGTGGTGGTGGCG
GTGGCGGTTTCATCAGCGGTGGTGGAGCAGCCGCAGCTGCTCCTGCTGGAGGAGCTGCCCCAGCTGCAGAAGCCCCAGCTGAAAAGAAGGAAGAGGAGAAGGAAGAGAGT
GACGATGACCTTGGCCTTTCACTTTTTGATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGAGTTTTCACCTTCGTTTGCCGGAACTCCGGTGCCGAGTGGACCGCCAAGCAGTACTCCGGCGACCTCGAAGGCTCCGCTGCCTCCACCTATGAGCTCCAGAGGAA
GCTCGTCCAGACTGCTCTCGCCGTCGACTCCTCCGGTGGTGTTCAGTCCTCTTTCTCTTACATCTCCCCCACTTCCGCCGTTTTCCAGGTGATCATTGGTGGTGGTGGCG
GTGGCGGTTTCATCAGCGGTGGTGGAGCAGCCGCAGCTGCTCCTGCTGGAGGAGCTGCCCCAGCTGCAGAAGCCCCAGCTGAAAAGAAGGAAGAGGAGAAGGAAGAGAGT
GACGATGACCTTGGCCTTTCACTTTTTGATTAG
Protein sequenceShow/hide protein sequence
MGVFTFVCRNSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISPTSAVFQVIIGGGGGGGFISGGGAAAAAPAGGAAPAAEAPAEKKEEEKEES
DDDLGLSLFD