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MS025465 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS025465
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionrRNA N-glycosidase
Genome locationscaffold412:447414..447935
RNA-Seq ExpressionMS025465
SyntenyMS025465
Gene Ontology termsGO:0017148 - negative regulation of translation (biological process)
GO:0030598 - rRNA N-glycosylase activity (molecular function)
InterPro domainsIPR001574 - Ribosome-inactivating protein
IPR016138 - Ribosome-inactivating protein, subdomain 1
IPR036041 - Ribosome-inactivating protein superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022158190.1 ribosome-inactivating protein bryodin I-like [Momordica charantia]1.1e-0937.21Show/hide
Query:  MSKSLVLCFLILAIFLAAPTYTLEGGRDITFTTNIDT---YASELNSFGQAIHTDMKKFDYFQLPAKFDVIGTNRFKEISLTN----WDKLYIHVVNVYV
        M+K LV C LILA+FLAAP  T+EG  D++F  +  T   YA+ LN++   +      FD   LP   +V G++R+  I LTN      +L I V NVYV
Subjt:  MSKSLVLCFLILAIFLAAPTYTLEGGRDITFTTNIDT---YASELNSFGQAIHTDMKKFDYFQLPAKFDVIGTNRFKEISLTN----WDKLYIHVVNVYV

Query:  VGYHTSNPKCLGSYFFNNREALAATTTI--------LPFGGSYIDLERNTVSRENSTLGHVNWS-TLVPSLY
        +G++T+  +C  S+FFN+  A  A   +        L F GSY  L      R++  LG V+ +   +P+LY
Subjt:  VGYHTSNPKCLGSYFFNNREALAATTTI--------LPFGGSYIDLERNTVSRENSTLGHVNWS-TLVPSLY

XP_022158196.1 putative ribosome-inactivating protein, partial [Momordica charantia]7.5e-3853.93Show/hide
Query:  NPIQTDLSFEKMSKS-LVLCFLILAIFLAAPTYTLEGGRDITFTTNIDTYASELNSFGQAIHTDMKKFDYFQLPAKFDVIGTNRFKEISLTN----WDKL
        +PIQ++ SFE MS S   LC L+LAI L A  +T EG R+ITFTTNI+TYASELN+F QA+ T  K+FDYF LP +  V GTNR++EI+L N      KL
Subjt:  NPIQTDLSFEKMSKS-LVLCFLILAIFLAAPTYTLEGGRDITFTTNIDTYASELNSFGQAIHTDMKKFDYFQLPAKFDVIGTNRFKEISLTN----WDKL

Query:  YIHVVNVYVVGYHTSNPKCLGSYFFNNREALAATT---------TILPFGGSYIDLERNTVSRENSTLGHVNWSTLVP
         I +VNVYV+ YHTSNP C GSYFFN+ +A AA +          +LPF GSY DL  N  SR N+ LG    S L+P
Subjt:  YIHVVNVYVVGYHTSNPKCLGSYFFNNREALAATT---------TILPFGGSYIDLERNTVSRENSTLGHVNWSTLVP

XP_022158438.1 ribosome-inactivating protein cucurmosin-like [Momordica charantia]7.6e-2243.2Show/hide
Query:  MSKSLVLCFLILAIFLAAPTYTLEGGRDITF-TTNIDTYASELNSFGQAIHTDMKKFDYFQLPAKFDVIGTNRFKEISLTNWD---KLYIHVVNVYVVGY
        M K  V C L LAIFLAAPTYT++G R IT  TTNID+Y S LN+F  A+  + K  +   L A  +VI  NRF EIS+ + +    L I +VNVYV+GY
Subjt:  MSKSLVLCFLILAIFLAAPTYTLEGGRDITF-TTNIDTYASELNSFGQAIHTDMKKFDYFQLPAKFDVIGTNRFKEISLTNWD---KLYIHVVNVYVVGY

Query:  HTSNPKCLGSYFFNNREALAATTTI---------LPFGGSYIDLERNTVSRENSTLGHVNWSTLVPSLY
        +T NP C   ++F++  A+ AT  +         LPF G Y D E+   +R +  LG  + + L+P+LY
Subjt:  HTSNPKCLGSYFFNNREALAATTTI---------LPFGGSYIDLERNTVSRENSTLGHVNWSTLVPSLY

XP_022158442.1 ribosome-inactivating protein momordin I-like [Momordica charantia]2.4e-0745.26Show/hide
Query:  EISLTNWD----KLYIHVVNVYVVGYHTSNPKCLGSYFFNNREALAA---------TTTILPFGGSYIDLERNTVSRENSTLGHVNWSTLVPSLY
        EISLTN +    +L I V+NVYV+GY+T +P C GSYFF +  A  A           T L F GSY  LE N  SR++  LG    S LV +LY
Subjt:  EISLTNWD----KLYIHVVNVYVVGYHTSNPKCLGSYFFNNREALAA---------TTTILPFGGSYIDLERNTVSRENSTLGHVNWSTLVPSLY

XP_023005049.1 ribosome-inactivating protein cucurmosin [Cucurbita maxima]1.1e-0431.32Show/hide
Query:  MASNPIQTDLSFEKMSKSLVLCFLILAIFLAAPTYTLEGGRDITFTTNIDTYASELNSFGQAIHTDMKKFDYFQLPAKFDVIGTNRFKEISLTNWD----
        M S PI +    +KM+KSL L FL LAIFL           D++  T+  +Y + + +  +A+  D K +D   L +   V+ + RF  I L N+D    
Subjt:  MASNPIQTDLSFEKMSKSLVLCFLILAIFLAAPTYTLEGGRDITFTTNIDTYASELNSFGQAIHTDMKKFDYFQLPAKFDVIGTNRFKEISLTNWD----

Query:  KLYIHVVNVYVVGYHTSNPKCLGSYFFNNREALA-------ATTTILPFGGSYIDLERNTVS-RENSTLGHVNWSTLVPSLY
           I V+NVY+V Y T       SYFF    A A            LP+ G+Y +L+      REN  LG     + + +L+
Subjt:  KLYIHVVNVYVVGYHTSNPKCLGSYFFNNREALA-------ATTTILPFGGSYIDLERNTVS-RENSTLGHVNWSTLVPSLY

TrEMBL top hitse value%identityAlignment
A0A6J1DV53 rRNA N-glycosidase5.5e-1037.21Show/hide
Query:  MSKSLVLCFLILAIFLAAPTYTLEGGRDITFTTNIDT---YASELNSFGQAIHTDMKKFDYFQLPAKFDVIGTNRFKEISLTN----WDKLYIHVVNVYV
        M+K LV C LILA+FLAAP  T+EG  D++F  +  T   YA+ LN++   +      FD   LP   +V G++R+  I LTN      +L I V NVYV
Subjt:  MSKSLVLCFLILAIFLAAPTYTLEGGRDITFTTNIDT---YASELNSFGQAIHTDMKKFDYFQLPAKFDVIGTNRFKEISLTN----WDKLYIHVVNVYV

Query:  VGYHTSNPKCLGSYFFNNREALAATTTI--------LPFGGSYIDLERNTVSRENSTLGHVNWS-TLVPSLY
        +G++T+  +C  S+FFN+  A  A   +        L F GSY  L      R++  LG V+ +   +P+LY
Subjt:  VGYHTSNPKCLGSYFFNNREALAATTTI--------LPFGGSYIDLERNTVSRENSTLGHVNWS-TLVPSLY

A0A6J1DW33 rRNA N-glycosidase3.7e-2243.2Show/hide
Query:  MSKSLVLCFLILAIFLAAPTYTLEGGRDITF-TTNIDTYASELNSFGQAIHTDMKKFDYFQLPAKFDVIGTNRFKEISLTNWD---KLYIHVVNVYVVGY
        M K  V C L LAIFLAAPTYT++G R IT  TTNID+Y S LN+F  A+  + K  +   L A  +VI  NRF EIS+ + +    L I +VNVYV+GY
Subjt:  MSKSLVLCFLILAIFLAAPTYTLEGGRDITF-TTNIDTYASELNSFGQAIHTDMKKFDYFQLPAKFDVIGTNRFKEISLTNWD---KLYIHVVNVYVVGY

Query:  HTSNPKCLGSYFFNNREALAATTTI---------LPFGGSYIDLERNTVSRENSTLGHVNWSTLVPSLY
        +T NP C   ++F++  A+ AT  +         LPF G Y D E+   +R +  LG  + + L+P+LY
Subjt:  HTSNPKCLGSYFFNNREALAATTTI---------LPFGGSYIDLERNTVSRENSTLGHVNWSTLVPSLY

A0A6J1DX83 rRNA N-glycosidase1.1e-0745.26Show/hide
Query:  EISLTNWD----KLYIHVVNVYVVGYHTSNPKCLGSYFFNNREALAA---------TTTILPFGGSYIDLERNTVSRENSTLGHVNWSTLVPSLY
        EISLTN +    +L I V+NVYV+GY+T +P C GSYFF +  A  A           T L F GSY  LE N  SR++  LG    S LV +LY
Subjt:  EISLTNWD----KLYIHVVNVYVVGYHTSNPKCLGSYFFNNREALAA---------TTTILPFGGSYIDLERNTVSRENSTLGHVNWSTLVPSLY

A0A6J1E098 rRNA N-glycosidase3.6e-3853.93Show/hide
Query:  NPIQTDLSFEKMSKS-LVLCFLILAIFLAAPTYTLEGGRDITFTTNIDTYASELNSFGQAIHTDMKKFDYFQLPAKFDVIGTNRFKEISLTN----WDKL
        +PIQ++ SFE MS S   LC L+LAI L A  +T EG R+ITFTTNI+TYASELN+F QA+ T  K+FDYF LP +  V GTNR++EI+L N      KL
Subjt:  NPIQTDLSFEKMSKS-LVLCFLILAIFLAAPTYTLEGGRDITFTTNIDTYASELNSFGQAIHTDMKKFDYFQLPAKFDVIGTNRFKEISLTN----WDKL

Query:  YIHVVNVYVVGYHTSNPKCLGSYFFNNREALAATT---------TILPFGGSYIDLERNTVSRENSTLGHVNWSTLVP
         I +VNVYV+ YHTSNP C GSYFFN+ +A AA +          +LPF GSY DL  N  SR N+ LG    S L+P
Subjt:  YIHVVNVYVVGYHTSNPKCLGSYFFNNREALAATT---------TILPFGGSYIDLERNTVSRENSTLGHVNWSTLVP

A0A6J1KY21 rRNA N-glycosidase5.3e-0531.32Show/hide
Query:  MASNPIQTDLSFEKMSKSLVLCFLILAIFLAAPTYTLEGGRDITFTTNIDTYASELNSFGQAIHTDMKKFDYFQLPAKFDVIGTNRFKEISLTNWD----
        M S PI +    +KM+KSL L FL LAIFL           D++  T+  +Y + + +  +A+  D K +D   L +   V+ + RF  I L N+D    
Subjt:  MASNPIQTDLSFEKMSKSLVLCFLILAIFLAAPTYTLEGGRDITFTTNIDTYASELNSFGQAIHTDMKKFDYFQLPAKFDVIGTNRFKEISLTNWD----

Query:  KLYIHVVNVYVVGYHTSNPKCLGSYFFNNREALA-------ATTTILPFGGSYIDLERNTVS-RENSTLGHVNWSTLVPSLY
           I V+NVY+V Y T       SYFF    A A            LP+ G+Y +L+      REN  LG     + + +L+
Subjt:  KLYIHVVNVYVVGYHTSNPKCLGSYFFNNREALA-------ATTTILPFGGSYIDLERNTVS-RENSTLGHVNWSTLVPSLY

SwissProt top hitse value%identityAlignment
P24817 Ribosome-inactivating protein beta-momorcharin3.5e-0630.18Show/hide
Query:  MSKSLVLCFLILAIFLAAPTYTLEGGRDITFTTNIDTYASELNSFGQAIHTDMKKFDYFQLPAKFDVIG-TNRFKEISLTNWD----KLYIHVVNVYVVG
        M K L+L FLI+AIF+  PT   +   D++ T    TY   +  F   +    K +D   +P  +  I  + RF  ++LT++      + I V NVYVV 
Subjt:  MSKSLVLCFLILAIFLAAPTYTLEGGRDITFTTNIDTYASELNSFGQAIHTDMKKFDYFQLPAKFDVIG-TNRFKEISLTNWD----KLYIHVVNVYVVG

Query:  YHTSNPKCLGSYFFNNREALA-------ATTTILPFGGSYIDLERNTVS-RENSTLGHVNWSTLVPSLY
        Y T +     SYFF      A            LP+ G+Y +L+      REN  LG    S+ + +L+
Subjt:  YHTSNPKCLGSYFFNNREALA-------ATTTILPFGGSYIDLERNTVS-RENSTLGHVNWSTLVPSLY

P29339 Ribosome-inactivating protein momordin II4.6e-0630.18Show/hide
Query:  MSKSLVLCFLILAIFLAAPTYTLEGGRDITFTTNIDTYASELNSFGQAIHTDMKKFDYFQLPAKFDVIG-TNRFKEISLTNWD----KLYIHVVNVYVVG
        M K L+L FLI+AIF+  PT   +   D++ T    TY   +  F   +    K +D   +P  +  I  + RF  + LT++      + I V NVYVV 
Subjt:  MSKSLVLCFLILAIFLAAPTYTLEGGRDITFTTNIDTYASELNSFGQAIHTDMKKFDYFQLPAKFDVIG-TNRFKEISLTNWD----KLYIHVVNVYVVG

Query:  YHTSNPKCLGSYFFNNREALA-------ATTTILPFGGSYIDLERNTVS-RENSTLGHVNWSTLVPSLY
        Y T +     SYFF      A            LP+ G+Y +L+      REN  LG    S+ + +L+
Subjt:  YHTSNPKCLGSYFFNNREALA-------ATTTILPFGGSYIDLERNTVS-RENSTLGHVNWSTLVPSLY

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATCCAATCCAATCCAGACCGACCTAAGTTTCGAAAAGATGAGCAAATCTTTAGTCCTTTGTTTCCTAATTCTTGCCATCTTCCTCGCCGCTCCTACGTATACTTT
GGAGGGCGGGCGCGATATCACCTTCACAACAAACATAGACACGTATGCATCTGAGCTCAATTCTTTCGGACAAGCTATACATACCGATATGAAAAAGTTTGATTACTTTC
AACTGCCTGCCAAATTTGATGTTATAGGAACAAATCGCTTCAAAGAAATCAGTCTTACAAATTGGGACAAGCTATACATACATGTAGTAAACGTTTATGTTGTTGGATAT
CACACCTCGAACCCAAAGTGTCTTGGATCCTACTTTTTCAACAATCGTGAAGCCCTTGCAGCTACGACAACAATACTTCCATTTGGTGGGAGTTACATAGACCTTGAAAG
GAATACAGTCAGCCGAGAAAATAGTACTCTTGGACACGTAAACTGGAGCACTCTGGTTCCATCGTTGTACAGCTCGAGATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCATCCAATCCAATCCAGACCGACCTAAGTTTCGAAAAGATGAGCAAATCTTTAGTCCTTTGTTTCCTAATTCTTGCCATCTTCCTCGCCGCTCCTACGTATACTTT
GGAGGGCGGGCGCGATATCACCTTCACAACAAACATAGACACGTATGCATCTGAGCTCAATTCTTTCGGACAAGCTATACATACCGATATGAAAAAGTTTGATTACTTTC
AACTGCCTGCCAAATTTGATGTTATAGGAACAAATCGCTTCAAAGAAATCAGTCTTACAAATTGGGACAAGCTATACATACATGTAGTAAACGTTTATGTTGTTGGATAT
CACACCTCGAACCCAAAGTGTCTTGGATCCTACTTTTTCAACAATCGTGAAGCCCTTGCAGCTACGACAACAATACTTCCATTTGGTGGGAGTTACATAGACCTTGAAAG
GAATACAGTCAGCCGAGAAAATAGTACTCTTGGACACGTAAACTGGAGCACTCTGGTTCCATCGTTGTACAGCTCGAGATAG
Protein sequenceShow/hide protein sequence
MASNPIQTDLSFEKMSKSLVLCFLILAIFLAAPTYTLEGGRDITFTTNIDTYASELNSFGQAIHTDMKKFDYFQLPAKFDVIGTNRFKEISLTNWDKLYIHVVNVYVVGY
HTSNPKCLGSYFFNNREALAATTTILPFGGSYIDLERNTVSRENSTLGHVNWSTLVPSLYSSR