; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS025468 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS025468
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold401:116611..118253
RNA-Seq ExpressionMS025468
SyntenyMS025468
Gene Ontology termsGO:0034641 - cellular nitrogen compound metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0044260 - cellular macromolecule metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsIPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038339.1 uncharacterized protein E6C27_scaffold270G002130 [Cucumis melo var. makuwa]2.0e-1633.73Show/hide
Query:  QLDSSSIKTLWSSKDIGWSVIDPIGKSGGLLYCKERKHFFKELQDLKSLCDECWCIVGDFNIIRRPSERSSCTRFARAMKKFNQLIEDLEIIEIKLSNGK
        + D S IK+LWS +DIGW  ++  G SGG+L   +  +    ++ LK L      + GDFNI R   ER  C R  + ++KFN +I   ++ E+ LSNG+
Subjt:  QLDSSSIKTLWSSKDIGWSVIDPIGKSGGLLYCKERKHFFKELQDLKSLCDECWCIVGDFNIIRRPSERSSCTRFARAMKKFNQLIEDLEIIEIKLSNGK

Query:  YTWSKP---------------EAKLAEDRSYGWAVFSLSSKLRNLKSSLKSWYSQNEKRRKAAEIQFLS
        +TWS+                E  L    S GWA F  S KLR +K ++K W++  ++ +   E   +S
Subjt:  YTWSKP---------------EAKLAEDRSYGWAVFSLSSKLRNLKSSLKSWYSQNEKRRKAAEIQFLS

RVW68817.1 hypothetical protein CK203_062237 [Vitis vinifera]3.2e-1429.15Show/hide
Query:  IKTLWSSKDIGWSVIDPIGKSGGLLYC---KERKHFFKELQDLKSLCDECWCIVGDFNIIRRPSERSSCTRFARAMKKFNQLIEDLEIIEIKLSNGKYTW
        +K+L   + + W  I+  G +GG+L C   ++R+  ++E   ++ L  E WC+ GDFN+I    ERS   R +  M++F Q+++DLE++++ L  G +TW
Subjt:  IKTLWSSKDIGWSVIDPIGKSGGLLYC---KERKHFFKELQDLKSLCDECWCIVGDFNIIRRPSERSSCTRFARAMKKFNQLIEDLEIIEIKLSNGKYTW

Query:  S-------------------KPEAKLAEDRSY-------GWAVFSLSSKLRNLKSSLKSWYSQNEKRRKAAEIQFLSQISSLDIKEEEVGLSIEESEKR
        S                   K E      RS+       G A + L++KL+ +K +LK W  +     ++ ++  L Q+   D  E E GL+ EE  +R
Subjt:  S-------------------KPEAKLAEDRSY-------GWAVFSLSSKLRNLKSSLKSWYSQNEKRRKAAEIQFLSQISSLDIKEEEVGLSIEESEKR

RVX13972.1 putative ribonuclease H protein [Vitis vinifera]9.4e-1426.98Show/hide
Query:  QLDSSSIKTLWSSKDIGWSVIDPIGKSGGLLYC-------------KERKHFFKELQDLKSLCDECWCIVGDFNIIRRPSERSSCTRFARAMKKFNQLIE
        ++    +++L S + + W  ++  G +GG+L C              ER+  ++EL  ++ L D+ WC+ GDFNI     ERSS  R + AM++F + ++
Subjt:  QLDSSSIKTLWSSKDIGWSVIDPIGKSGGLLYC-------------KERKHFFKELQDLKSLCDECWCIVGDFNIIRRPSERSSCTRFARAMKKFNQLIE

Query:  DLEIIEIKLSNGKYTWS----------------KPE-----AKLAEDRSY-------GWAVFSLSSKLRNLKSSLKSWYSQNEKRRKAAEIQFLSQISSL
        DLE++++ L  G++TWS                 P      + + + R++       G A + L+ K++ +K  LK W  +   R +  +   L Q+   
Subjt:  DLEIIEIKLSNGKYTWS----------------KPE-----AKLAEDRSY-------GWAVFSLSSKLRNLKSSLKSWYSQNEKRRKAAEIQFLSQISSL

Query:  DIKEEEVGLSIEESE
        D  E E  LS+EE+E
Subjt:  DIKEEEVGLSIEESE

TYJ97056.1 uncharacterized protein E5676_scaffold506G001240 [Cucumis melo var. makuwa]4.5e-1633.14Show/hide
Query:  QLDSSSIKTLWSSKDIGWSVIDPIGKSGGLLYCKERKHFFKELQDLKSLCDECWCIVGDFNIIRRPSERSSCTRFARAMKKFNQLIEDLEIIEIKLSNGK
        + D S IK+LWS +D+GW  ++  G SGG+L   +  +    ++ LK L      + GDFNI R   ER  C R  + ++KFN +I   ++ E+ LSNG+
Subjt:  QLDSSSIKTLWSSKDIGWSVIDPIGKSGGLLYCKERKHFFKELQDLKSLCDECWCIVGDFNIIRRPSERSSCTRFARAMKKFNQLIEDLEIIEIKLSNGK

Query:  YTWSKP---------------EAKLAEDRSYGWAVFSLSSKLRNLKSSLKSWYSQNEKRRKAAEIQFLS
        +TWS+                E  L    S GWA F  S KLR +K ++K W++  ++ +   E   +S
Subjt:  YTWSKP---------------EAKLAEDRSYGWAVFSLSSKLRNLKSSLKSWYSQNEKRRKAAEIQFLS

XP_022154822.1 uncharacterized protein LOC111021983 [Momordica charantia]2.8e-1842.86Show/hide
Query:  QLDSSSIKTLWSSKDIGWSVIDPIGKSGGLLYCKERKHFFKELQDLKSLCDECWCIVGDFNIIRRPSERSSCTRFARAMKKFNQLIEDLEIIEIKLSNGK
        Q+D   IK+LWSSKD+GW+ ++           + RK  + EL+D+    ++ WC+ GDFN+ R PS++SS  R  R+M+KFN +I +L++ E+ LSNGK
Subjt:  QLDSSSIKTLWSSKDIGWSVIDPIGKSGGLLYCKERKHFFKELQDLKSLCDECWCIVGDFNIIRRPSERSSCTRFARAMKKFNQLIEDLEIIEIKLSNGK

Query:  YTWSK
        +TWS+
Subjt:  YTWSK

TrEMBL top hitse value%identityAlignment
A0A2N9FB74 Uncharacterized protein1.2e-1434.19Show/hide
Query:  LDSSSIKTLWSSKDIGWSVIDPIGKSGGLLYCKERKHFFK----------ELQDLKSLCDECWCIVGDFNIIRRPSERSSCTRFARAMKKFNQLIEDLEI
        LD   +++LWS+  + W  ++ +G SGG  +C     F++          EL+D++      WC+ GDFN+IR PSER  C R    M +F+  +EDL +
Subjt:  LDSSSIKTLWSSKDIGWSVIDPIGKSGGLLYCKERKHFFK----------ELQDLKSLCDECWCIVGDFNIIRRPSERSSCTRFARAMKKFNQLIEDLEI

Query:  IEIKLSNGKYTWSKPEA
        +++ L  G++TWS   A
Subjt:  IEIKLSNGKYTWSKPEA

A0A2N9FLJ2 Reverse transcriptase domain-containing protein1.1e-1529.22Show/hide
Query:  DSSSIKTLWSSKDIGWSVIDPIGKSGG-LLYCKERKHFFKELQDLKSLCDECWCIVGDFNIIRRPSERSSCTRFARAMKKFNQLIEDLEIIEIKL-SNGK
        D   I+++W +  + W+V+D +G +GG LL   +R   + EL+ ++      WC+ GDFN++R PSER  C R    M  F+  IED +++++ L   G+
Subjt:  DSSSIKTLWSSKDIGWSVIDPIGKSGG-LLYCKERKHFFKELQDLKSLCDECWCIVGDFNIIRRPSERSSCTRFARAMKKFNQLIEDLEIIEIKL-SNGK

Query:  YTWSKPEAKLAEDRSYGWAVFS-------------LSSKLRN---------LKSSLKSWYSQNEKRRKAAEIQFLSQISSLDIKEEEVGLSIEESEKRIQ
        YTWS      +  R   + + S             L   L +         LK  LK W           ++Q  S++S LD KEE  GLS  + ++R  
Subjt:  YTWSKPEAKLAEDRSYGWAVFS-------------LSSKLRN---------LKSSLKSWYSQNEKRRKAAEIQFLSQISSLDIKEEEVGLSIEESEKRIQ

Query:  LIMGLQQYSSGEYSSATSW
        +I  L + +   +   TSW
Subjt:  LIMGLQQYSSGEYSSATSW

A0A5A7TAF5 Uncharacterized protein9.8e-1733.73Show/hide
Query:  QLDSSSIKTLWSSKDIGWSVIDPIGKSGGLLYCKERKHFFKELQDLKSLCDECWCIVGDFNIIRRPSERSSCTRFARAMKKFNQLIEDLEIIEIKLSNGK
        + D S IK+LWS +DIGW  ++  G SGG+L   +  +    ++ LK L      + GDFNI R   ER  C R  + ++KFN +I   ++ E+ LSNG+
Subjt:  QLDSSSIKTLWSSKDIGWSVIDPIGKSGGLLYCKERKHFFKELQDLKSLCDECWCIVGDFNIIRRPSERSSCTRFARAMKKFNQLIEDLEIIEIKLSNGK

Query:  YTWSKP---------------EAKLAEDRSYGWAVFSLSSKLRNLKSSLKSWYSQNEKRRKAAEIQFLS
        +TWS+                E  L    S GWA F  S KLR +K ++K W++  ++ +   E   +S
Subjt:  YTWSKP---------------EAKLAEDRSYGWAVFSLSSKLRNLKSSLKSWYSQNEKRRKAAEIQFLS

A0A5D3BDI9 Uncharacterized protein2.2e-1633.14Show/hide
Query:  QLDSSSIKTLWSSKDIGWSVIDPIGKSGGLLYCKERKHFFKELQDLKSLCDECWCIVGDFNIIRRPSERSSCTRFARAMKKFNQLIEDLEIIEIKLSNGK
        + D S IK+LWS +D+GW  ++  G SGG+L   +  +    ++ LK L      + GDFNI R   ER  C R  + ++KFN +I   ++ E+ LSNG+
Subjt:  QLDSSSIKTLWSSKDIGWSVIDPIGKSGGLLYCKERKHFFKELQDLKSLCDECWCIVGDFNIIRRPSERSSCTRFARAMKKFNQLIEDLEIIEIKLSNGK

Query:  YTWSKP---------------EAKLAEDRSYGWAVFSLSSKLRNLKSSLKSWYSQNEKRRKAAEIQFLS
        +TWS+                E  L    S GWA F  S KLR +K ++K W++  ++ +   E   +S
Subjt:  YTWSKP---------------EAKLAEDRSYGWAVFSLSSKLRNLKSSLKSWYSQNEKRRKAAEIQFLS

A0A6J1DMQ9 uncharacterized protein LOC1110219831.4e-1842.86Show/hide
Query:  QLDSSSIKTLWSSKDIGWSVIDPIGKSGGLLYCKERKHFFKELQDLKSLCDECWCIVGDFNIIRRPSERSSCTRFARAMKKFNQLIEDLEIIEIKLSNGK
        Q+D   IK+LWSSKD+GW+ ++           + RK  + EL+D+    ++ WC+ GDFN+ R PS++SS  R  R+M+KFN +I +L++ E+ LSNGK
Subjt:  QLDSSSIKTLWSSKDIGWSVIDPIGKSGGLLYCKERKHFFKELQDLKSLCDECWCIVGDFNIIRRPSERSSCTRFARAMKKFNQLIEDLEIIEIKLSNGK

Query:  YTWSK
        +TWS+
Subjt:  YTWSK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCCACCAGTTAGACTCTTCTTCGATCAAGACCCTTTGGAGTTCCAAAGACATTGGATGGTCTGTCATTGACCCTATTGGCAAATCAGGTGGCCTACTGTATTGTAA
GGAAAGGAAGCATTTTTTCAAAGAATTGCAGGACCTCAAATCTCTTTGCGATGAATGTTGGTGCATAGTCGGGGATTTCAACATTATTAGACGGCCATCTGAAAGGTCCT
CGTGCACAAGATTTGCAAGAGCCATGAAGAAATTCAATCAACTCATCGAGGATCTTGAGATCATAGAGATTAAATTATCAAATGGGAAGTACACATGGTCTAAGCCTGAA
GCCAAGCTTGCTGAGGATAGATCTTATGGCTGGGCTGTTTTCTCTCTCTCTTCTAAATTGAGAAACCTCAAATCATCTTTAAAGTCTTGGTACTCACAGAATGAGAAAAG
GAGAAAAGCAGCTGAGATTCAGTTTTTAAGTCAAATTTCCTCTCTGGATATCAAGGAGGAAGAAGTCGGTCTTTCCATTGAGGAGTCCGAAAAAAGAATTCAACTTATCA
TGGGTCTTCAGCAATACAGCAGTGGAGAATATTCTTCAGCTACTTCTTGGCCCGATCCTGCCTCCTCAAAGGCGTTTGCCGTTTGTTGTGGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCCACCAGTTAGACTCTTCTTCGATCAAGACCCTTTGGAGTTCCAAAGACATTGGATGGTCTGTCATTGACCCTATTGGCAAATCAGGTGGCCTACTGTATTGTAA
GGAAAGGAAGCATTTTTTCAAAGAATTGCAGGACCTCAAATCTCTTTGCGATGAATGTTGGTGCATAGTCGGGGATTTCAACATTATTAGACGGCCATCTGAAAGGTCCT
CGTGCACAAGATTTGCAAGAGCCATGAAGAAATTCAATCAACTCATCGAGGATCTTGAGATCATAGAGATTAAATTATCAAATGGGAAGTACACATGGTCTAAGCCTGAA
GCCAAGCTTGCTGAGGATAGATCTTATGGCTGGGCTGTTTTCTCTCTCTCTTCTAAATTGAGAAACCTCAAATCATCTTTAAAGTCTTGGTACTCACAGAATGAGAAAAG
GAGAAAAGCAGCTGAGATTCAGTTTTTAAGTCAAATTTCCTCTCTGGATATCAAGGAGGAAGAAGTCGGTCTTTCCATTGAGGAGTCCGAAAAAAGAATTCAACTTATCA
TGGGTCTTCAGCAATACAGCAGTGGAGAATATTCTTCAGCTACTTCTTGGCCCGATCCTGCCTCCTCAAAGGCGTTTGCCGTTTGTTGTGGTTAA
Protein sequenceShow/hide protein sequence
MAHQLDSSSIKTLWSSKDIGWSVIDPIGKSGGLLYCKERKHFFKELQDLKSLCDECWCIVGDFNIIRRPSERSSCTRFARAMKKFNQLIEDLEIIEIKLSNGKYTWSKPE
AKLAEDRSYGWAVFSLSSKLRNLKSSLKSWYSQNEKRRKAAEIQFLSQISSLDIKEEEVGLSIEESEKRIQLIMGLQQYSSGEYSSATSWPDPASSKAFAVCCG