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MS025475 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS025475
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionprotein SIEVE ELEMENT OCCLUSION B-like
Genome locationscaffold13:402018..402284
RNA-Seq ExpressionMS025475
SyntenyMS025475
Gene Ontology termsGO:0010088 - phloem development (biological process)
InterPro domainsIPR027944 - Sieve element occlusion, C-terminal
IPR039299 - Protein SIEVE ELEMENT OCCLUSION


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6574940.1 Protein SIEVE ELEMENT OCCLUSION B, partial [Cucurbita argyrosperma subsp. sororia]1.3e-3378.31Show/hide
Query:  VLVGRGVLILRLLEDFPKWKQTSPLKGFPDAFREYLNELAAKIHQCSEVILPGFSGWIPVTVNCPECPRFMEPAVGFNCCHKR
        +LVGRG+LILRLL+DFPKWKQ   LKGFPDAFREY NELAAK HQC  VILPGFSGWIP+ VNCPECPRFME  + F CCH R
Subjt:  VLVGRGVLILRLLEDFPKWKQTSPLKGFPDAFREYLNELAAKIHQCSEVILPGFSGWIPVTVNCPECPRFMEPAVGFNCCHKR

XP_022959050.1 protein SIEVE ELEMENT OCCLUSION B-like [Cucurbita moschata]1.3e-3378.31Show/hide
Query:  VLVGRGVLILRLLEDFPKWKQTSPLKGFPDAFREYLNELAAKIHQCSEVILPGFSGWIPVTVNCPECPRFMEPAVGFNCCHKR
        +LVGRG+LILRLL+DFPKWKQ   LKGFPDAFREY NELAAK HQC  VILPGFSGWIP+ VNCPECPRFME  + F CCH R
Subjt:  VLVGRGVLILRLLEDFPKWKQTSPLKGFPDAFREYLNELAAKIHQCSEVILPGFSGWIPVTVNCPECPRFMEPAVGFNCCHKR

XP_023006706.1 protein SIEVE ELEMENT OCCLUSION B-like [Cucurbita maxima]5.7e-3479.52Show/hide
Query:  VLVGRGVLILRLLEDFPKWKQTSPLKGFPDAFREYLNELAAKIHQCSEVILPGFSGWIPVTVNCPECPRFMEPAVGFNCCHKR
        +LVGRG+LILRLLEDFPKWKQ   LKGFPDAFREY NELAAK HQC  VILPGFSGWIP+ VNCPECPRFME  + F CCH R
Subjt:  VLVGRGVLILRLLEDFPKWKQTSPLKGFPDAFREYLNELAAKIHQCSEVILPGFSGWIPVTVNCPECPRFMEPAVGFNCCHKR

XP_023515202.1 protein SIEVE ELEMENT OCCLUSION B-like [Cucurbita pepo subsp. pepo]1.3e-3376.74Show/hide
Query:  VLVGRGVLILRLLEDFPKWKQTSPLKGFPDAFREYLNELAAKIHQCSEVILPGFSGWIPVTVNCPECPRFMEPAVGFNCCHKRADM
        VLVGRGVLILRLLE+FPKWKQ+  LK FPDAFREY NELA K HQC  VILPGFSGWIP+T+NCPECPRFME  + F CCH  A M
Subjt:  VLVGRGVLILRLLEDFPKWKQTSPLKGFPDAFREYLNELAAKIHQCSEVILPGFSGWIPVTVNCPECPRFMEPAVGFNCCHKRADM

XP_023547573.1 protein SIEVE ELEMENT OCCLUSION B-like [Cucurbita pepo subsp. pepo]1.3e-3378.31Show/hide
Query:  VLVGRGVLILRLLEDFPKWKQTSPLKGFPDAFREYLNELAAKIHQCSEVILPGFSGWIPVTVNCPECPRFMEPAVGFNCCHKR
        +LVGRG+LILRLL+DFPKWKQ   LKGFPDAFREY NELAAK HQC  VILPGFSGWIP+ VNCPECPRFME  + F CCH R
Subjt:  VLVGRGVLILRLLEDFPKWKQTSPLKGFPDAFREYLNELAAKIHQCSEVILPGFSGWIPVTVNCPECPRFMEPAVGFNCCHKR

TrEMBL top hitse value%identityAlignment
A0A0A0LKR0 Uncharacterized protein8.1e-3481.48Show/hide
Query:  VLVGRGVLILRLLEDFPKWKQTSPLKGFPDAFREYLNELAAKIHQCSEVILPGFSGWIPVTVNCPECPRFMEPAVGFNCCH
        +LVGRG LILRLLEDFPKWKQT  LKGFPDAFREY NELAAK HQC  VILPGFSGWIP+ VNCPECPRFME  + F CCH
Subjt:  VLVGRGVLILRLLEDFPKWKQTSPLKGFPDAFREYLNELAAKIHQCSEVILPGFSGWIPVTVNCPECPRFMEPAVGFNCCH

A0A6J1CAR6 protein SIEVE ELEMENT OCCLUSION B-like8.1e-3480.25Show/hide
Query:  VLVGRGVLILRLLEDFPKWKQTSPLKGFPDAFREYLNELAAKIHQCSEVILPGFSGWIPVTVNCPECPRFMEPAVGFNCCH
        VLVGRGVL+LRLLEDFPKWKQT  LKGFPDAFREY NELA   HQC  VILPGFSGWIP+ VNCPECPRFME  + F CCH
Subjt:  VLVGRGVLILRLLEDFPKWKQTSPLKGFPDAFREYLNELAAKIHQCSEVILPGFSGWIPVTVNCPECPRFMEPAVGFNCCH

A0A6J1H571 protein SIEVE ELEMENT OCCLUSION B-like6.2e-3478.31Show/hide
Query:  VLVGRGVLILRLLEDFPKWKQTSPLKGFPDAFREYLNELAAKIHQCSEVILPGFSGWIPVTVNCPECPRFMEPAVGFNCCHKR
        +LVGRG+LILRLL+DFPKWKQ   LKGFPDAFREY NELAAK HQC  VILPGFSGWIP+ VNCPECPRFME  + F CCH R
Subjt:  VLVGRGVLILRLLEDFPKWKQTSPLKGFPDAFREYLNELAAKIHQCSEVILPGFSGWIPVTVNCPECPRFMEPAVGFNCCHKR

A0A6J1KFY2 protein SIEVE ELEMENT OCCLUSION B-like1.8e-3375.58Show/hide
Query:  VLVGRGVLILRLLEDFPKWKQTSPLKGFPDAFREYLNELAAKIHQCSEVILPGFSGWIPVTVNCPECPRFMEPAVGFNCCHKRADM
        VLVGRG LILRLLE+FPKWKQ+  LK FPDAFREY NELA K HQC  VILPGFSGWIP+T+NCPECPRFME  + F CCH  A M
Subjt:  VLVGRGVLILRLLEDFPKWKQTSPLKGFPDAFREYLNELAAKIHQCSEVILPGFSGWIPVTVNCPECPRFMEPAVGFNCCHKRADM

A0A6J1KYH4 protein SIEVE ELEMENT OCCLUSION B-like2.8e-3479.52Show/hide
Query:  VLVGRGVLILRLLEDFPKWKQTSPLKGFPDAFREYLNELAAKIHQCSEVILPGFSGWIPVTVNCPECPRFMEPAVGFNCCHKR
        +LVGRG+LILRLLEDFPKWKQ   LKGFPDAFREY NELAAK HQC  VILPGFSGWIP+ VNCPECPRFME  + F CCH R
Subjt:  VLVGRGVLILRLLEDFPKWKQTSPLKGFPDAFREYLNELAAKIHQCSEVILPGFSGWIPVTVNCPECPRFMEPAVGFNCCHKR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCGTGCTCGTCGGTCGTGGCGTTTTGATTCTACGATTGCTAGAGGATTTTCCAAAATGGAAGCAAACCTCGCCCCTTAAAGGATTCCCTGACGCTTTTAGAGAATA
CTTGAATGAGTTGGCTGCCAAGATCCACCAGTGCAGTGAAGTTATTCTTCCAGGATTTAGTGGATGGATTCCTGTAACTGTCAATTGTCCTGAATGTCCTCGCTTCATGG
AGCCTGCTGTTGGCTTCAACTGCTGCCACAAAAGGGCTGATATGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTCGTGCTCGTCGGTCGTGGCGTTTTGATTCTACGATTGCTAGAGGATTTTCCAAAATGGAAGCAAACCTCGCCCCTTAAAGGATTCCCTGACGCTTTTAGAGAATA
CTTGAATGAGTTGGCTGCCAAGATCCACCAGTGCAGTGAAGTTATTCTTCCAGGATTTAGTGGATGGATTCCTGTAACTGTCAATTGTCCTGAATGTCCTCGCTTCATGG
AGCCTGCTGTTGGCTTCAACTGCTGCCACAAAAGGGCTGATATGTGA
Protein sequenceShow/hide protein sequence
MLVLVGRGVLILRLLEDFPKWKQTSPLKGFPDAFREYLNELAAKIHQCSEVILPGFSGWIPVTVNCPECPRFMEPAVGFNCCHKRADM