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MS025568 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS025568
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionglycine-rich cell wall structural protein-like isoform X10
Genome locationscaffold45:561114..561758
RNA-Seq ExpressionMS025568
SyntenyMS025568
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0006468 - protein phosphorylation (biological process)
GO:0009584 - detection of visible light (biological process)
GO:0010105 - negative regulation of ethylene-activated signaling pathway (biological process)
GO:0018298 - protein-chromophore linkage (biological process)
GO:0005783 - endoplasmic reticulum (cellular component)
GO:0000155 - phosphorelay sensor kinase activity (molecular function)
GO:0009881 - photoreceptor activity (molecular function)
GO:0051740 - ethylene binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6582166.1 hypothetical protein SDJN03_22168, partial [Cucurbita argyrosperma subsp. sororia]6.9e-1773.39Show/hide
Query:  VGAFALILALLVVGLAESRKLEKETLGG--GGGAGGGF----------------------GGGGGLGGGGGIGGGAGGGFGGGKGGGIGGGVGGGGGAGG
        VGA AL+LA L+VG AESRKLEKETLGG  GGGAGGGF                      GGGGGLGGGGG+GGGAGGGFGGG GGGI  G+GGGGG GG
Subjt:  VGAFALILALLVVGLAESRKLEKETLGG--GGGAGGGF----------------------GGGGGLGGGGGIGGGAGGGFGGGKGGGIGGGVGGGGGAGG

Query:  GFGGGHGGGAGGGFGGGKGGGFGGGSGGGAGGGFGGGAGGGAGGGF--------------------GGGHGGGAGGGFGGGKGGGFGGGSGGGAGGGFGG
        G GGG GGG GGGFGGGKGGGFGGG+GGGAGGGFGGGAGGGAGGGF                    GGG GGGAGGG GGG GGGFGGG GGGAGGGFGG
Subjt:  GFGGGHGGGAGGGFGGGKGGGFGGGSGGGAGGGFGGGAGGGAGGGF--------------------GGGHGGGAGGGFGGGKGGGFGGGSGGGAGGGFGG

Query:  GSGGGAGGGFGGGAGGGAGGGFGGGHGGGAGGGFGGGAGGGFGGGIGG
        G+GGGAGGGFGGGAGGGAGGGFGGGHGGGAGGGFGGG GGGFGGG GG
Subjt:  GSGGGAGGGFGGGAGGGAGGGFGGGHGGGAGGGFGGGAGGGFGGGIGG

XP_022138053.1 phytochrome B-like [Momordica charantia]6.2e-3489.09Show/hide
Query:  MGKLGNRSVGAFALILALLVVGLAESRKLEKETLGGGGGAGGGFGGGGGLGGGGGIGGGAGGGFGGGKGGGIGGGVGGGGGAGGGFGGGHGGGAGGGFGG
        MGKLGNRSVGAFALILALLVVGLAESRKLEKETLGGGGGAGGGF            GGGAGGGFGGGKGGGIGGGVGGGGGAGGGFGGGHGGGAGGGFGG
Subjt:  MGKLGNRSVGAFALILALLVVGLAESRKLEKETLGGGGGAGGGFGGGGGLGGGGGIGGGAGGGFGGGKGGGIGGGVGGGGGAGGGFGGGHGGGAGGGFGG

Query:  GKGGGFGGGSGGGAGGGFGGGAGGGAGGGFGGGHGGGAGGGFGGGKGGGFGGGSGGGAGGGFGGGSGGGA--------GGGFGGGAGGGAGGGFGGGHGG
        GKGGGFGGGSGGGAGGGFGGGAGGGAGGGFGGGHGGGAGGGFGGGKGGGFGGGSGGGAGGGFGGG GGGA        GGGFGGG+GGGAGGGFGGGHGG
Subjt:  GKGGGFGGGSGGGAGGGFGGGAGGGAGGGFGGGHGGGAGGGFGGGKGGGFGGGSGGGAGGGFGGGSGGGA--------GGGFGGGAGGGAGGGFGGGHGG

Query:  GAGGGFGGGAGGGFGGGIGG
        GAGGGFGGG GGGFGGG GG
Subjt:  GAGGGFGGGAGGGFGGGIGG

XP_022955579.1 glycine-rich cell wall structural protein 1.8-like isoform X5 [Cucurbita moschata]6.9e-1779.91Show/hide
Query:  VGAFALILALLVVGLAESRKLEKETLGG--GGGAGGGFGGGGGLGG--GGGIGGGAGGGFGGGKGGGIGGGVGGGGGAGGGFGGGH--------------
        VGA AL+LA L+VG AESRKLEKETLGG  GGGAGGGFGGG G GG  GGG GGG GGG GG  GGG+GGG G GGGAGGGFGGGH              
Subjt:  VGAFALILALLVVGLAESRKLEKETLGG--GGGAGGGFGGGGGLGG--GGGIGGGAGGGFGGGKGGGIGGGVGGGGGAGGGFGGGH--------------

Query:  --GGGAGGGFGGGKGGGFGGGSGGGAGGGFGGGAGGGAGGGFGGGHGGGAGGGFGGGKGGGFGGGSGGGAGGGFGGGSGGGAGGGFGGGAGGGAGGGFGG
          GGGAGGGFGGGKGGGFGGG+GGGAGGGFGGGAGGGAGGGFGGG GGG GGG GGG GGGFGGG GGGAGGGFGGG+GGGAGGGFGGGAGGGAGGGFGG
Subjt:  --GGGAGGGFGGGKGGGFGGGSGGGAGGGFGGGAGGGAGGGFGGGHGGGAGGGFGGGKGGGFGGGSGGGAGGGFGGGSGGGAGGGFGGGAGGGAGGGFGG

Query:  GHGGGAGGGFGGGAGGGFGGGIGG
        GHGGG GGGFGGG GGGFGGG GG
Subjt:  GHGGGAGGGFGGGAGGGFGGGIGG

XP_022955583.1 glycine-rich cell wall structural protein-like isoform X9 [Cucurbita moschata]4.8e-1878.26Show/hide
Query:  VGAFALILALLVVGLAESRKLEKETLGG--GGGAGGGF----------------------GGGGGLGGGGGIGGGAGGGFGGGKGGGI--GGGVGGGGGA
        VGA AL+LA L+VG AESRKLEKETLGG  GGGAGGGF                      GGGGGLGGGGG+GGGAGGGFGGG GGGI  GGG+GGGGG 
Subjt:  VGAFALILALLVVGLAESRKLEKETLGG--GGGAGGGF----------------------GGGGGLGGGGGIGGGAGGGFGGGKGGGI--GGGVGGGGGA

Query:  GGGFGGGHGGGAGGGFGGGKGGGFGGGSGGGAGGGFGGGAGGGAGGGFGGGHGGGAGGGFGGGKGGGFGGGSGGGAGGGFGGGSGGGAGGGFGGGAGGGA
        GGG GGG GGG GGG GGG GGGFGGG+GGGAGGGFGGGAGGGAGGGFGGGHGGG GGGFGGGKGGGFGGG+GGGAGGGFGGG+GGGAGGGFGGG GGG 
Subjt:  GGGFGGGHGGGAGGGFGGGKGGGFGGGSGGGAGGGFGGGAGGGAGGGFGGGHGGGAGGGFGGGKGGGFGGGSGGGAGGGFGGGSGGGAGGGFGGGAGGGA

Query:  GGGFGGGHGGGAGGGFGGGAGGGFGGGIGG
        GGGFGGG GGG GGG GGGAGGGFGGG GG
Subjt:  GGGFGGGHGGGAGGGFGGGAGGGFGGGIGG

XP_022955585.1 glycine-rich cell wall structural protein-like isoform X10 [Cucurbita moschata]2.2e-1870.23Show/hide
Query:  VGAFALILALLVVGLAESRKLEKETLGG--GGGAGGGF----------------------GGGGGLGGGGGIGGGAGGGFGGGKGGGIGGGVGG------
        VGA AL+LA L+VG AESRKLEKETLGG  GGGAGGGF                      GGGGGLGGGGG+GGGAGGGFGGG GGG+GGG GG      
Subjt:  VGAFALILALLVVGLAESRKLEKETLGG--GGGAGGGF----------------------GGGGGLGGGGGIGGGAGGGFGGGKGGGIGGGVGG------

Query:  ----------------------------GGGAGGGFGGGHGGGAGGGFGGGKGGGFGGGSGGGAGGGFGGGAGGGAGGGFGGGHGGGAGGGFGGGKGGGF
                                    GGGAGGGFGGGHGGG GGGFGGGKGGGFGGG+GGGAGGGFGGGAGGGAGGGFGGGHGGG GGGFGGGKGGGF
Subjt:  ----------------------------GGGAGGGFGGGHGGGAGGGFGGGKGGGFGGGSGGGAGGGFGGGAGGGAGGGFGGGHGGGAGGGFGGGKGGGF

Query:  GGGSGGGAGGGFGGGSGGGAGGGFGGGAGGGAGGGFGGGHGGGAGGGFGGGAGGGFGGGIGG
        GGG+GGGAGGGFGGG+GGGAGGGFGGG GGG GGGFGGG GGG GGG GGGAGGGFGGG GG
Subjt:  GGGSGGGAGGGFGGGSGGGAGGGFGGGAGGGAGGGFGGGHGGGAGGGFGGGAGGGFGGGIGG

TrEMBL top hitse value%identityAlignment
A0A6J1CC02 phytochrome B-like3.0e-3489.09Show/hide
Query:  MGKLGNRSVGAFALILALLVVGLAESRKLEKETLGGGGGAGGGFGGGGGLGGGGGIGGGAGGGFGGGKGGGIGGGVGGGGGAGGGFGGGHGGGAGGGFGG
        MGKLGNRSVGAFALILALLVVGLAESRKLEKETLGGGGGAGGGF            GGGAGGGFGGGKGGGIGGGVGGGGGAGGGFGGGHGGGAGGGFGG
Subjt:  MGKLGNRSVGAFALILALLVVGLAESRKLEKETLGGGGGAGGGFGGGGGLGGGGGIGGGAGGGFGGGKGGGIGGGVGGGGGAGGGFGGGHGGGAGGGFGG

Query:  GKGGGFGGGSGGGAGGGFGGGAGGGAGGGFGGGHGGGAGGGFGGGKGGGFGGGSGGGAGGGFGGGSGGGA--------GGGFGGGAGGGAGGGFGGGHGG
        GKGGGFGGGSGGGAGGGFGGGAGGGAGGGFGGGHGGGAGGGFGGGKGGGFGGGSGGGAGGGFGGG GGGA        GGGFGGG+GGGAGGGFGGGHGG
Subjt:  GKGGGFGGGSGGGAGGGFGGGAGGGAGGGFGGGHGGGAGGGFGGGKGGGFGGGSGGGAGGGFGGGSGGGA--------GGGFGGGAGGGAGGGFGGGHGG

Query:  GAGGGFGGGAGGGFGGGIGG
        GAGGGFGGG GGGFGGG GG
Subjt:  GAGGGFGGGAGGGFGGGIGG

A0A6J1GUE1 glycine-rich cell wall structural protein-like isoform X92.3e-1878.26Show/hide
Query:  VGAFALILALLVVGLAESRKLEKETLGG--GGGAGGGF----------------------GGGGGLGGGGGIGGGAGGGFGGGKGGGI--GGGVGGGGGA
        VGA AL+LA L+VG AESRKLEKETLGG  GGGAGGGF                      GGGGGLGGGGG+GGGAGGGFGGG GGGI  GGG+GGGGG 
Subjt:  VGAFALILALLVVGLAESRKLEKETLGG--GGGAGGGF----------------------GGGGGLGGGGGIGGGAGGGFGGGKGGGI--GGGVGGGGGA

Query:  GGGFGGGHGGGAGGGFGGGKGGGFGGGSGGGAGGGFGGGAGGGAGGGFGGGHGGGAGGGFGGGKGGGFGGGSGGGAGGGFGGGSGGGAGGGFGGGAGGGA
        GGG GGG GGG GGG GGG GGGFGGG+GGGAGGGFGGGAGGGAGGGFGGGHGGG GGGFGGGKGGGFGGG+GGGAGGGFGGG+GGGAGGGFGGG GGG 
Subjt:  GGGFGGGHGGGAGGGFGGGKGGGFGGGSGGGAGGGFGGGAGGGAGGGFGGGHGGGAGGGFGGGKGGGFGGGSGGGAGGGFGGGSGGGAGGGFGGGAGGGA

Query:  GGGFGGGHGGGAGGGFGGGAGGGFGGGIGG
        GGGFGGG GGG GGG GGGAGGGFGGG GG
Subjt:  GGGFGGGHGGGAGGGFGGGAGGGFGGGIGG

A0A6J1GVH1 glycine-rich cell wall structural protein 1.8-like isoform X69.8e-1772.66Show/hide
Query:  VGAFALILALLVVGLAESRKLEKETLGG----------------GGGAGGGF--------GGGGGLGGGGGIGGGAGGGFGGGKGGGIGGGVGGGGGAGG
        VGA AL+LA L+VG AESRKLEKETLGG                GGGAGGGF        GGGGGLGGGGG+GGGAGGGFGGGKGGG GG  G GGGAGG
Subjt:  VGAFALILALLVVGLAESRKLEKETLGG----------------GGGAGGGF--------GGGGGLGGGGGIGGGAGGGFGGGKGGGIGGGVGGGGGAGG

Query:  GFGGGHGGGAGGGFGGGKGGGF----GGGSGGGAGGGFGGGAGGGAGGGFGGGHGGGAGGGF----GGGKGGGFGGGSGGGA------------------
        GFGGG GGGAGGGFGGGKGGGF    GGG+GGGAGGGFGGGAGGGAGGGFGGGHGGGAGGGF    GGG GGGFGGG+GGGA                  
Subjt:  GFGGGHGGGAGGGFGGGKGGGF----GGGSGGGAGGGFGGGAGGGAGGGFGGGHGGGAGGGF----GGGKGGGFGGGSGGGA------------------

Query:  --GGGFGGGSGGGAGGGFGGGAGGGAGGGFGGGHGGGAGGGFGGGAGGGFGGGIGG
          GGGFGGG+GGGAGGGFGGGAGGGAGGGFGGGHGGG GGGFGGG GGGFGGG GG
Subjt:  --GGGFGGGSGGGAGGGFGGGAGGGAGGGFGGGHGGGAGGGFGGGAGGGFGGGIGG

A0A6J1GVH6 glycine-rich cell wall structural protein-like isoform X101.0e-1870.23Show/hide
Query:  VGAFALILALLVVGLAESRKLEKETLGG--GGGAGGGF----------------------GGGGGLGGGGGIGGGAGGGFGGGKGGGIGGGVGG------
        VGA AL+LA L+VG AESRKLEKETLGG  GGGAGGGF                      GGGGGLGGGGG+GGGAGGGFGGG GGG+GGG GG      
Subjt:  VGAFALILALLVVGLAESRKLEKETLGG--GGGAGGGF----------------------GGGGGLGGGGGIGGGAGGGFGGGKGGGIGGGVGG------

Query:  ----------------------------GGGAGGGFGGGHGGGAGGGFGGGKGGGFGGGSGGGAGGGFGGGAGGGAGGGFGGGHGGGAGGGFGGGKGGGF
                                    GGGAGGGFGGGHGGG GGGFGGGKGGGFGGG+GGGAGGGFGGGAGGGAGGGFGGGHGGG GGGFGGGKGGGF
Subjt:  ----------------------------GGGAGGGFGGGHGGGAGGGFGGGKGGGFGGGSGGGAGGGFGGGAGGGAGGGFGGGHGGGAGGGFGGGKGGGF

Query:  GGGSGGGAGGGFGGGSGGGAGGGFGGGAGGGAGGGFGGGHGGGAGGGFGGGAGGGFGGGIGG
        GGG+GGGAGGGFGGG+GGGAGGGFGGG GGG GGGFGGG GGG GGG GGGAGGGFGGG GG
Subjt:  GGGSGGGAGGGFGGGSGGGAGGGFGGGAGGGAGGGFGGGHGGGAGGGFGGGAGGGFGGGIGG

A0A6J1GWP1 glycine-rich cell wall structural protein 1.8-like isoform X53.4e-1779.91Show/hide
Query:  VGAFALILALLVVGLAESRKLEKETLGG--GGGAGGGFGGGGGLGG--GGGIGGGAGGGFGGGKGGGIGGGVGGGGGAGGGFGGGH--------------
        VGA AL+LA L+VG AESRKLEKETLGG  GGGAGGGFGGG G GG  GGG GGG GGG GG  GGG+GGG G GGGAGGGFGGGH              
Subjt:  VGAFALILALLVVGLAESRKLEKETLGG--GGGAGGGFGGGGGLGG--GGGIGGGAGGGFGGGKGGGIGGGVGGGGGAGGGFGGGH--------------

Query:  --GGGAGGGFGGGKGGGFGGGSGGGAGGGFGGGAGGGAGGGFGGGHGGGAGGGFGGGKGGGFGGGSGGGAGGGFGGGSGGGAGGGFGGGAGGGAGGGFGG
          GGGAGGGFGGGKGGGFGGG+GGGAGGGFGGGAGGGAGGGFGGG GGG GGG GGG GGGFGGG GGGAGGGFGGG+GGGAGGGFGGGAGGGAGGGFGG
Subjt:  --GGGAGGGFGGGKGGGFGGGSGGGAGGGFGGGAGGGAGGGFGGGHGGGAGGGFGGGKGGGFGGGSGGGAGGGFGGGSGGGAGGGFGGGAGGGAGGGFGG

Query:  GHGGGAGGGFGGGAGGGFGGGIGG
        GHGGG GGGFGGG GGGFGGG GG
Subjt:  GHGGGAGGGFGGGAGGGFGGGIGG

SwissProt top hitse value%identityAlignment
P27483 Glycine-rich cell wall structural protein1.4e-0773.68Show/hide
Query:  LGNRSVGAFALILALLVVGLAESRKLEKETLGGGGGAGGGFGGGGGLGGGGGIGGGAGGGFGGGKGGGIGGGVGGGGGAGGGFGGGHGGGAGGGFGGGKG
        +G  S G   L+L ++V+G+ E R+ EKETLGGGGG G G G GGG G GGGI  GAGGGFGGG GGG GGG+GGG G GGG GGG GGGAGGG GGG G
Subjt:  LGNRSVGAFALILALLVVGLAESRKLEKETLGGGGGAGGGFGGGGGLGGGGGIGGGAGGGFGGGKGGGIGGGVGGGGGAGGGFGGGHGGGAGGGFGGGKG

Query:  GGFGGGSGGGAGGGFGGGAGGGAGGGFGGGHGGGAGGGFGGGKGGGFGGGSGGGAGGGFGGGSGGGAGGGFGGGAGGGAGGGFGGGHGGGAGGGFGGGAG
        GG GGG GGG GGG GGGAGGG GGG GGG GGGAGGG GGG GGG GGG+GGGAGG  GGG GGG GGG GGGAGGGAGGG GGGHGGG GGG GGG+G
Subjt:  GGFGGGSGGGAGGGFGGGAGGGAGGGFGGGHGGGAGGGFGGGKGGGFGGGSGGGAGGGFGGGSGGGAGGGFGGGAGGGAGGGFGGGHGGGAGGGFGGGAG

Query:  GGFGGGIGG
        GG GGGIGG
Subjt:  GGFGGGIGG

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGAAGCTTGGAAACAGATCAGTTGGAGCGTTTGCTCTCATTCTTGCATTGTTGGTTGTGGGATTGGCGGAAAGCCGGAAACTAGAGAAGGAAACGCTTGGTGGCGG
CGGCGGTGCCGGTGGTGGGTTTGGTGGTGGAGGTGGGCTTGGTGGTGGAGGTGGAATTGGTGGAGGTGCTGGTGGTGGTTTTGGAGGTGGAAAAGGTGGTGGGATAGGAG
GTGGAGTCGGCGGCGGAGGTGGCGCCGGAGGTGGATTTGGAGGCGGCCATGGTGGCGGAGCCGGAGGTGGATTTGGAGGTGGTAAAGGAGGAGGTTTCGGTGGTGGTTCA
GGAGGTGGAGCCGGCGGTGGTTTTGGTGGTGGTGCAGGAGGTGGAGCTGGTGGTGGATTTGGAGGAGGCCATGGTGGAGGTGCCGGAGGTGGATTTGGAGGTGGTAAAGG
AGGTGGTTTTGGCGGTGGTTCAGGAGGTGGAGCCGGTGGTGGTTTTGGCGGTGGTTCAGGAGGTGGAGCCGGTGGTGGTTTTGGCGGTGGTGCAGGAGGTGGAGCTGGTG
GTGGATTTGGAGGTGGCCATGGGGGTGGTGCCGGAGGTGGATTCGGCGGTGGAGCAGGAGGAGGCTTTGGTGGAGGAATTGGCGGCAGAGTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGGAAGCTTGGAAACAGATCAGTTGGAGCGTTTGCTCTCATTCTTGCATTGTTGGTTGTGGGATTGGCGGAAAGCCGGAAACTAGAGAAGGAAACGCTTGGTGGCGG
CGGCGGTGCCGGTGGTGGGTTTGGTGGTGGAGGTGGGCTTGGTGGTGGAGGTGGAATTGGTGGAGGTGCTGGTGGTGGTTTTGGAGGTGGAAAAGGTGGTGGGATAGGAG
GTGGAGTCGGCGGCGGAGGTGGCGCCGGAGGTGGATTTGGAGGCGGCCATGGTGGCGGAGCCGGAGGTGGATTTGGAGGTGGTAAAGGAGGAGGTTTCGGTGGTGGTTCA
GGAGGTGGAGCCGGCGGTGGTTTTGGTGGTGGTGCAGGAGGTGGAGCTGGTGGTGGATTTGGAGGAGGCCATGGTGGAGGTGCCGGAGGTGGATTTGGAGGTGGTAAAGG
AGGTGGTTTTGGCGGTGGTTCAGGAGGTGGAGCCGGTGGTGGTTTTGGCGGTGGTTCAGGAGGTGGAGCCGGTGGTGGTTTTGGCGGTGGTGCAGGAGGTGGAGCTGGTG
GTGGATTTGGAGGTGGCCATGGGGGTGGTGCCGGAGGTGGATTCGGCGGTGGAGCAGGAGGAGGCTTTGGTGGAGGAATTGGCGGCAGAGTCTAA
Protein sequenceShow/hide protein sequence
MGKLGNRSVGAFALILALLVVGLAESRKLEKETLGGGGGAGGGFGGGGGLGGGGGIGGGAGGGFGGGKGGGIGGGVGGGGGAGGGFGGGHGGGAGGGFGGGKGGGFGGGS
GGGAGGGFGGGAGGGAGGGFGGGHGGGAGGGFGGGKGGGFGGGSGGGAGGGFGGGSGGGAGGGFGGGAGGGAGGGFGGGHGGGAGGGFGGGAGGGFGGGIGGRV