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MS025570 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS025570
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold629:57551..60536
RNA-Seq ExpressionMS025570
SyntenyMS025570
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022147761.1 uncharacterized protein LOC111016619 [Momordica charantia]2.1e-5173.25Show/hide
Query:  LKRKSISSFKELARAFVTQFFKGRNRSKPLAYLLSIKQKSTKSLKDYVARFNEEKLQVECLTDAVSLLAFMFGMKDEQLVLYFGKKTLSTFSKALSRAQK
        LKRKSISSFKELARAFVTQF  G NRS+P+AYLL+IKQK+T+SLKDYVARFN+EKLQVE LTDAV LL F+ G+KDEQLV  FGK+T  TFS+A SRAQ 
Subjt:  LKRKSISSFKELARAFVTQFFKGRNRSKPLAYLLSIKQKSTKSLKDYVARFNEEKLQVECLTDAVSLLAFMFGMKDEQLVLYFGKKTLSTFSKALSRAQK

Query:  YISAGELIHSKQDPDGKHTDHNTKRERSREKQHISRWEKANSKQDWLVQRDPQRKFE
        Y+S GELIHSK+DP GK+ D+NTKR+R  EK+H  RWE+++S Q  LVQRDPQRKFE
Subjt:  YISAGELIHSKQDPDGKHTDHNTKRERSREKQHISRWEKANSKQDWLVQRDPQRKFE

XP_022158344.1 uncharacterized protein LOC111024851 [Momordica charantia]1.7e-4566.04Show/hide
Query:  LKRKSISSFKELARAFVTQFFKGRNRSKPLAYLLSIKQKSTKSLKDYVARFNEEKLQVECLTDAVSLLAFMFGMKDEQLVLYFGKKTLSTFSKALSRAQK
        LKR SISSFKELA AFVTQF  GR +SKP+ YLL+IKQK+T+SLK+YVARFNEEKLQVE LTDAV+L+AF+ G+KDE+LV  FGK+T  TF +ALSRAQK
Subjt:  LKRKSISSFKELARAFVTQFFKGRNRSKPLAYLLSIKQKSTKSLKDYVARFNEEKLQVECLTDAVSLLAFMFGMKDEQLVLYFGKKTLSTFSKALSRAQK

Query:  YISAGELIHSKQDPDGKHTDHNTKRERSREKQHISRWEKANSKQDWLVQRDPQRKFENA
        Y+SAGELIH  +D + +  +++TKRER  EK+H S WE+++S    LVQRDPQ KFE +
Subjt:  YISAGELIHSKQDPDGKHTDHNTKRERSREKQHISRWEKANSKQDWLVQRDPQRKFENA

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]9.8e-4943.11Show/hide
Query:  LEQQEVRPPALVRDPRKGKTPTVEEVEESTNDAQRKLKIGGKDELRTDVFGQLGLVR---------------------TTLDKRRPPSRAEQSEKLSGEQ
        LE +E     LVRDP+KGK PT  + EESTN    KL+IGG    RT +F      +                      +LDK +P  R E SEK     
Subjt:  LEQQEVRPPALVRDPRKGKTPTVEEVEESTNDAQRKLKIGGKDELRTDVFGQLGLVR---------------------TTLDKRRPPSRAEQSEKLSGEQ

Query:  RDNRFDLQEL--------------------------------------------------------------------------LKRKSISSFKELARAF
        ++  FDL+EL                                                                          LKR SISSFK LARAF
Subjt:  RDNRFDLQEL--------------------------------------------------------------------------LKRKSISSFKELARAF

Query:  VTQFFKGRNRSKPLAYLLSIKQKSTKSLKDYVARFNEEKLQVECLTDAVSLLAFMFGMKDEQLVLYFGKKTLSTFSKALSRAQKYISAGELIHSKQDPDG
        VTQF  GR RS+P+AYLL+IKQ++T+SL+DYVARFNEEKLQVE LTDAVSLLAFM G++DE L   FGK+T +TFS+ALSRAQ+Y+SAGE  +SK++PDG
Subjt:  VTQFFKGRNRSKPLAYLLSIKQKSTKSLKDYVARFNEEKLQVECLTDAVSLLAFMFGMKDEQLVLYFGKKTLSTFSKALSRAQKYISAGELIHSKQDPDG

Query:  KHTDHNTKRERSREKQHISRWEKANSKQDWLVQRDPQRKFE
        K TD   KRERS +K   SRWE    K+D   Q+DP RKFE
Subjt:  KHTDHNTKRERSREKQHISRWEKANSKQDWLVQRDPQRKFE

XP_022159109.1 uncharacterized protein LOC111025548 [Momordica charantia]4.9e-4065.38Show/hide
Query:  LKRKSISSFKELARAFVTQFFKGRNRSKPLAYLLSIKQKSTKSLKDYVARFNEEKLQVECLTDAVSLLAFMFGMKDEQLVLYFGKKTLSTFSKALSRAQK
        LKR SISSFK LARAF+TQF  GR RS+P+AYLL+IKQ++ +SL DYVARFNEEKLQ+E LTDAVSLLAFM G++DE L   F K+T STFS+ALSRAQ+
Subjt:  LKRKSISSFKELARAFVTQFFKGRNRSKPLAYLLSIKQKSTKSLKDYVARFNEEKLQVECLTDAVSLLAFMFGMKDEQLVLYFGKKTLSTFSKALSRAQK

Query:  YISAGELIHSKQDPDGKHTDHNTKRERSREKQHISRWEKANSKQDWLVQRDPQRKF
        Y+SA E  +SK++PDGK TD   KRERS +K   SRWE    K+D   Q+DP RKF
Subjt:  YISAGELIHSKQDPDGKHTDHNTKRERSREKQHISRWEKANSKQDWLVQRDPQRKF

XP_022159368.1 uncharacterized protein LOC111025785 [Momordica charantia]1.0e-4266.24Show/hide
Query:  LKRKSISSFKELARAFVTQFFKGRNRSKPLAYLLSIKQKSTKSLKDYVARFNEEKLQVECLTDAVSLLAFMFGMKDEQLVLYFGKKTLSTFSKALSRAQK
        +KR SISSFK LARAFVTQF  GR RS+P+AYLL+IKQ++T+SL DYVARFN+EKLQ+E LTD VSLLAFM G++DE L   FGKKT STFS+ LSRAQ+
Subjt:  LKRKSISSFKELARAFVTQFFKGRNRSKPLAYLLSIKQKSTKSLKDYVARFNEEKLQVECLTDAVSLLAFMFGMKDEQLVLYFGKKTLSTFSKALSRAQK

Query:  YISAGELIHSKQDPDGKHTDHNTKRERSREKQHISRWEKANSKQDWLVQRDPQRKFE
        Y+SAGE  +SK++PDGK TD   KRERS +K   SRWE    K+D   Q+DP RKFE
Subjt:  YISAGELIHSKQDPDGKHTDHNTKRERSREKQHISRWEKANSKQDWLVQRDPQRKFE

TrEMBL top hitse value%identityAlignment
A0A6J1D3B7 uncharacterized protein LOC1110166191.0e-5173.25Show/hide
Query:  LKRKSISSFKELARAFVTQFFKGRNRSKPLAYLLSIKQKSTKSLKDYVARFNEEKLQVECLTDAVSLLAFMFGMKDEQLVLYFGKKTLSTFSKALSRAQK
        LKRKSISSFKELARAFVTQF  G NRS+P+AYLL+IKQK+T+SLKDYVARFN+EKLQVE LTDAV LL F+ G+KDEQLV  FGK+T  TFS+A SRAQ 
Subjt:  LKRKSISSFKELARAFVTQFFKGRNRSKPLAYLLSIKQKSTKSLKDYVARFNEEKLQVECLTDAVSLLAFMFGMKDEQLVLYFGKKTLSTFSKALSRAQK

Query:  YISAGELIHSKQDPDGKHTDHNTKRERSREKQHISRWEKANSKQDWLVQRDPQRKFE
        Y+S GELIHSK+DP GK+ D+NTKR+R  EK+H  RWE+++S Q  LVQRDPQRKFE
Subjt:  YISAGELIHSKQDPDGKHTDHNTKRERSREKQHISRWEKANSKQDWLVQRDPQRKFE

A0A6J1DWY0 uncharacterized protein LOC1110252934.7e-4943.11Show/hide
Query:  LEQQEVRPPALVRDPRKGKTPTVEEVEESTNDAQRKLKIGGKDELRTDVFGQLGLVR---------------------TTLDKRRPPSRAEQSEKLSGEQ
        LE +E     LVRDP+KGK PT  + EESTN    KL+IGG    RT +F      +                      +LDK +P  R E SEK     
Subjt:  LEQQEVRPPALVRDPRKGKTPTVEEVEESTNDAQRKLKIGGKDELRTDVFGQLGLVR---------------------TTLDKRRPPSRAEQSEKLSGEQ

Query:  RDNRFDLQEL--------------------------------------------------------------------------LKRKSISSFKELARAF
        ++  FDL+EL                                                                          LKR SISSFK LARAF
Subjt:  RDNRFDLQEL--------------------------------------------------------------------------LKRKSISSFKELARAF

Query:  VTQFFKGRNRSKPLAYLLSIKQKSTKSLKDYVARFNEEKLQVECLTDAVSLLAFMFGMKDEQLVLYFGKKTLSTFSKALSRAQKYISAGELIHSKQDPDG
        VTQF  GR RS+P+AYLL+IKQ++T+SL+DYVARFNEEKLQVE LTDAVSLLAFM G++DE L   FGK+T +TFS+ALSRAQ+Y+SAGE  +SK++PDG
Subjt:  VTQFFKGRNRSKPLAYLLSIKQKSTKSLKDYVARFNEEKLQVECLTDAVSLLAFMFGMKDEQLVLYFGKKTLSTFSKALSRAQKYISAGELIHSKQDPDG

Query:  KHTDHNTKRERSREKQHISRWEKANSKQDWLVQRDPQRKFE
        K TD   KRERS +K   SRWE    K+D   Q+DP RKFE
Subjt:  KHTDHNTKRERSREKQHISRWEKANSKQDWLVQRDPQRKFE

A0A6J1DYL6 uncharacterized protein LOC1110257855.1e-4366.24Show/hide
Query:  LKRKSISSFKELARAFVTQFFKGRNRSKPLAYLLSIKQKSTKSLKDYVARFNEEKLQVECLTDAVSLLAFMFGMKDEQLVLYFGKKTLSTFSKALSRAQK
        +KR SISSFK LARAFVTQF  GR RS+P+AYLL+IKQ++T+SL DYVARFN+EKLQ+E LTD VSLLAFM G++DE L   FGKKT STFS+ LSRAQ+
Subjt:  LKRKSISSFKELARAFVTQFFKGRNRSKPLAYLLSIKQKSTKSLKDYVARFNEEKLQVECLTDAVSLLAFMFGMKDEQLVLYFGKKTLSTFSKALSRAQK

Query:  YISAGELIHSKQDPDGKHTDHNTKRERSREKQHISRWEKANSKQDWLVQRDPQRKFE
        Y+SAGE  +SK++PDGK TD   KRERS +K   SRWE    K+D   Q+DP RKFE
Subjt:  YISAGELIHSKQDPDGKHTDHNTKRERSREKQHISRWEKANSKQDWLVQRDPQRKFE

A0A6J1DZ49 uncharacterized protein LOC1110248518.3e-4666.04Show/hide
Query:  LKRKSISSFKELARAFVTQFFKGRNRSKPLAYLLSIKQKSTKSLKDYVARFNEEKLQVECLTDAVSLLAFMFGMKDEQLVLYFGKKTLSTFSKALSRAQK
        LKR SISSFKELA AFVTQF  GR +SKP+ YLL+IKQK+T+SLK+YVARFNEEKLQVE LTDAV+L+AF+ G+KDE+LV  FGK+T  TF +ALSRAQK
Subjt:  LKRKSISSFKELARAFVTQFFKGRNRSKPLAYLLSIKQKSTKSLKDYVARFNEEKLQVECLTDAVSLLAFMFGMKDEQLVLYFGKKTLSTFSKALSRAQK

Query:  YISAGELIHSKQDPDGKHTDHNTKRERSREKQHISRWEKANSKQDWLVQRDPQRKFENA
        Y+SAGELIH  +D + +  +++TKRER  EK+H S WE+++S    LVQRDPQ KFE +
Subjt:  YISAGELIHSKQDPDGKHTDHNTKRERSREKQHISRWEKANSKQDWLVQRDPQRKFENA

A0A6J1E1E7 uncharacterized protein LOC1110255482.4e-4065.38Show/hide
Query:  LKRKSISSFKELARAFVTQFFKGRNRSKPLAYLLSIKQKSTKSLKDYVARFNEEKLQVECLTDAVSLLAFMFGMKDEQLVLYFGKKTLSTFSKALSRAQK
        LKR SISSFK LARAF+TQF  GR RS+P+AYLL+IKQ++ +SL DYVARFNEEKLQ+E LTDAVSLLAFM G++DE L   F K+T STFS+ALSRAQ+
Subjt:  LKRKSISSFKELARAFVTQFFKGRNRSKPLAYLLSIKQKSTKSLKDYVARFNEEKLQVECLTDAVSLLAFMFGMKDEQLVLYFGKKTLSTFSKALSRAQK

Query:  YISAGELIHSKQDPDGKHTDHNTKRERSREKQHISRWEKANSKQDWLVQRDPQRKF
        Y+SA E  +SK++PDGK TD   KRERS +K   SRWE    K+D   Q+DP RKF
Subjt:  YISAGELIHSKQDPDGKHTDHNTKRERSREKQHISRWEKANSKQDWLVQRDPQRKF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCACCAGAACATATCCTTACTTCTCCGAAAACTGGAACAACAAGAAGTGAGGCCACCTGCGCTCGTCCGAGATCCACGAAAGGGTAAAACTCCTACGGTTGAGGAAGT
TGAAGAGTCAACCAATGACGCTCAAAGAAAACTAAAGATAGGAGGAAAAGACGAACTCCGAACTGACGTTTTTGGTCAATTAGGCCTCGTACGGACTACCCTTGACAAAA
GGAGACCACCTAGCCGAGCAGAGCAGTCAGAGAAGCTATCTGGAGAACAAAGAGACAATAGATTCGACCTTCAAGAGCTGTTGAAGAGAAAATCAATCTCAAGCTTCAAA
GAGCTGGCAAGAGCATTTGTCACCCAATTCTTCAAGGGACGAAATAGGAGCAAACCTTTAGCATACCTCCTATCTATAAAACAAAAGTCGACAAAGAGCCTGAAGGACTA
TGTGGCTCGGTTCAACGAAGAAAAGCTACAAGTCGAATGTCTTACAGATGCAGTATCACTATTAGCCTTCATGTTCGGAATGAAAGACGAACAACTGGTATTATATTTTG
GGAAGAAAACCCTGAGTACCTTCTCGAAGGCACTGAGCCGCGCACAGAAGTATATAAGTGCTGGAGAATTAATCCATTCGAAGCAAGACCCTGATGGTAAACATACAGAT
CACAACACGAAGAGGGAGAGATCCAGAGAAAAGCAACACATATCGAGATGGGAGAAAGCAAATAGCAAGCAAGACTGGTTAGTTCAACGAGATCCTCAAAGGAAGTTTGA
AAATGCACCAGACAATGGTTCCATTCGAACAGAAATTCATAATTGGAAAGTTGGGCTTTCGCCTTATCAAGCTTCCTCTACAAATTCGCGAATTCAATCTAAGACCACTT
CTTCGCGGTTTCAAGCCGTGTTGGGCATTTTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGCACCAGAACATATCCTTACTTCTCCGAAAACTGGAACAACAAGAAGTGAGGCCACCTGCGCTCGTCCGAGATCCACGAAAGGGTAAAACTCCTACGGTTGAGGAAGT
TGAAGAGTCAACCAATGACGCTCAAAGAAAACTAAAGATAGGAGGAAAAGACGAACTCCGAACTGACGTTTTTGGTCAATTAGGCCTCGTACGGACTACCCTTGACAAAA
GGAGACCACCTAGCCGAGCAGAGCAGTCAGAGAAGCTATCTGGAGAACAAAGAGACAATAGATTCGACCTTCAAGAGCTGTTGAAGAGAAAATCAATCTCAAGCTTCAAA
GAGCTGGCAAGAGCATTTGTCACCCAATTCTTCAAGGGACGAAATAGGAGCAAACCTTTAGCATACCTCCTATCTATAAAACAAAAGTCGACAAAGAGCCTGAAGGACTA
TGTGGCTCGGTTCAACGAAGAAAAGCTACAAGTCGAATGTCTTACAGATGCAGTATCACTATTAGCCTTCATGTTCGGAATGAAAGACGAACAACTGGTATTATATTTTG
GGAAGAAAACCCTGAGTACCTTCTCGAAGGCACTGAGCCGCGCACAGAAGTATATAAGTGCTGGAGAATTAATCCATTCGAAGCAAGACCCTGATGGTAAACATACAGAT
CACAACACGAAGAGGGAGAGATCCAGAGAAAAGCAACACATATCGAGATGGGAGAAAGCAAATAGCAAGCAAGACTGGTTAGTTCAACGAGATCCTCAAAGGAAGTTTGA
AAATGCACCAGACAATGGTTCCATTCGAACAGAAATTCATAATTGGAAAGTTGGGCTTTCGCCTTATCAAGCTTCCTCTACAAATTCGCGAATTCAATCTAAGACCACTT
CTTCGCGGTTTCAAGCCGTGTTGGGCATTTTCTAG
Protein sequenceShow/hide protein sequence
MHQNISLLLRKLEQQEVRPPALVRDPRKGKTPTVEEVEESTNDAQRKLKIGGKDELRTDVFGQLGLVRTTLDKRRPPSRAEQSEKLSGEQRDNRFDLQELLKRKSISSFK
ELARAFVTQFFKGRNRSKPLAYLLSIKQKSTKSLKDYVARFNEEKLQVECLTDAVSLLAFMFGMKDEQLVLYFGKKTLSTFSKALSRAQKYISAGELIHSKQDPDGKHTD
HNTKRERSREKQHISRWEKANSKQDWLVQRDPQRKFENAPDNGSIRTEIHNWKVGLSPYQASSTNSRIQSKTTSSRFQAVLGIF