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MS025577 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS025577
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold629:297038..298031
RNA-Seq ExpressionMS025577
SyntenyMS025577
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022135942.1 uncharacterized protein LOC111007775 [Momordica charantia]2.4e-1340.65Show/hide
Query:  SISASLGVLIRDHRGQVLASGTKYLEFVSSVDEAEALAAAKGINLAMETGIYPIQLETDSSQIFHLVWQEVEDLSETGEIVARVKGMLPD-GDQRPFSFT
        + SA L +LIRD    VL S   ++  VS V  AE LAA +G+ LA+E G+ P Q+ETDSSQ+F+L+  + ED SE G + + ++ ++        FSF 
Subjt:  SISASLGVLIRDHRGQVLASGTKYLEFVSSVDEAEALAAAKGINLAMETGIYPIQLETDSSQIFHLVWQEVEDLSETGEIVARVKGMLPD-GDQRPFSFT

Query:  RRGGNEAAHNLARRALLQQENRV
         R GN  AH LAR  ++ +   V
Subjt:  RRGGNEAAHNLARRALLQQENRV

XP_022139684.1 uncharacterized protein LOC111010533 [Momordica charantia]2.4e-2661.16Show/hide
Query:  SASLGV-LIRDHRGQVLASGTKYLEFVSSVDEAEALAAAKGINLAMETGIYPIQLETDSSQIFHLVWQEVEDLSETGEIVARVKGMLPDGDQRPFSFTRR
        +A LGV +IRDHRGQVLAS TKYLE V+SVD+AEALAA +G+ +AMETGI PI LETDS +I++L  ++ E LS+TG I+  VK  L    Q  +SFT+R
Subjt:  SASLGV-LIRDHRGQVLASGTKYLEFVSSVDEAEALAAAKGINLAMETGIYPIQLETDSSQIFHLVWQEVEDLSETGEIVARVKGMLPDGDQRPFSFTRR

Query:  GGNEAAHNLARRALLQQENRV
         GN  AH LARRAL  QEN V
Subjt:  GGNEAAHNLARRALLQQENRV

XP_022140628.1 uncharacterized protein LOC111011237 [Momordica charantia]1.3e-2456.03Show/hide
Query:  ASLGVLIRDHRGQVLASGTKYLEFVSSVDEAEALAAAKGINLAMETGIYPIQLETDSSQIFHLVWQEVEDLSETGEIVARVKGMLPDGDQRPFSFTRRGG
        A LG++IR+ RGQV+AS TKYLE + SVD AEA+ A +G+ LA + G+ P+ LETDSS+IF+L  Q  EDLSETGEIV + K          F+F +R G
Subjt:  ASLGVLIRDHRGQVLASGTKYLEFVSSVDEAEALAAAKGINLAMETGIYPIQLETDSSQIFHLVWQEVEDLSETGEIVARVKGMLPDGDQRPFSFTRRGG

Query:  NEAAHNLARRALLQQE
        N+AAH LARRALL +E
Subjt:  NEAAHNLARRALLQQE

XP_022150918.1 uncharacterized protein LOC111018954 [Momordica charantia]7.8e-1747.41Show/hide
Query:  ASLGVLIRDHRGQVLASGTKYLEFVSSVDEAEALAAAKGINLAMETGIYPIQLETDSSQIFHLVWQEVEDLSETGEIVARVKGMLPDGDQRPFSFTRRGG
        A LG++I + RGQV+A+ TKYLE + SVD AEA+AA +G+ LA E G++P                 +EDLSETGEIV + K          F+F +R G
Subjt:  ASLGVLIRDHRGQVLASGTKYLEFVSSVDEAEALAAAKGINLAMETGIYPIQLETDSSQIFHLVWQEVEDLSETGEIVARVKGMLPDGDQRPFSFTRRGG

Query:  NEAAHNLARRALLQQE
        N+AAH LARRALL  E
Subjt:  NEAAHNLARRALLQQE

XP_030970588.1 uncharacterized protein LOC115990962 [Quercus lobata]8.4e-1139.29Show/hide
Query:  ASLGVLIRDHRGQVLASGTKYLEFVSSVDEAEALAAAKGINLAMETGIYPIQLETDSSQIFHLVWQEVEDLSETGEIVARVKGMLPDGDQRPFSFTRRGG
        A LGV++RDH+G+V+AS +K  +  SS DE EALA  + I+ A+E  +  + +E DS  I   +  E E  +  G +++ +K  L       FS T R G
Subjt:  ASLGVLIRDHRGQVLASGTKYLEFVSSVDEAEALAAAKGINLAMETGIYPIQLETDSSQIFHLVWQEVEDLSETGEIVARVKGMLPDGDQRPFSFTRRGG

Query:  NEAAHNLARRAL
        N  AHNLA+ A+
Subjt:  NEAAHNLARRAL

TrEMBL top hitse value%identityAlignment
A0A2N9I921 Reverse transcriptase domain-containing protein6.3e-1239.37Show/hide
Query:  ALIFPSISASLGVLIRDHRGQVLASGTKYLEFVSSVDEAEALAAAKGINLAMETGIYPIQLETDSSQIFHLVWQEVEDLSETGEIVARVKGMLPDGDQRP
        A+   S  A LGV+IRD  G V+AS  + + F  SV   EALAA + +  A+E G + I+ E DS QI   + QEV   +  G I+  ++          
Subjt:  ALIFPSISASLGVLIRDHRGQVLASGTKYLEFVSSVDEAEALAAAKGINLAMETGIYPIQLETDSSQIFHLVWQEVEDLSETGEIVARVKGMLPDGDQRP

Query:  FSFTRRGGNEAAHNLARRALLQQENRV
        F  TRR GN+AAH LAR A + Q+  V
Subjt:  FSFTRRGGNEAAHNLARRALLQQENRV

A0A6J1C467 uncharacterized protein LOC1110077751.1e-1340.65Show/hide
Query:  SISASLGVLIRDHRGQVLASGTKYLEFVSSVDEAEALAAAKGINLAMETGIYPIQLETDSSQIFHLVWQEVEDLSETGEIVARVKGMLPD-GDQRPFSFT
        + SA L +LIRD    VL S   ++  VS V  AE LAA +G+ LA+E G+ P Q+ETDSSQ+F+L+  + ED SE G + + ++ ++        FSF 
Subjt:  SISASLGVLIRDHRGQVLASGTKYLEFVSSVDEAEALAAAKGINLAMETGIYPIQLETDSSQIFHLVWQEVEDLSETGEIVARVKGMLPD-GDQRPFSFT

Query:  RRGGNEAAHNLARRALLQQENRV
         R GN  AH LAR  ++ +   V
Subjt:  RRGGNEAAHNLARRALLQQENRV

A0A6J1CDQ4 uncharacterized protein LOC1110105331.2e-2661.16Show/hide
Query:  SASLGV-LIRDHRGQVLASGTKYLEFVSSVDEAEALAAAKGINLAMETGIYPIQLETDSSQIFHLVWQEVEDLSETGEIVARVKGMLPDGDQRPFSFTRR
        +A LGV +IRDHRGQVLAS TKYLE V+SVD+AEALAA +G+ +AMETGI PI LETDS +I++L  ++ E LS+TG I+  VK  L    Q  +SFT+R
Subjt:  SASLGV-LIRDHRGQVLASGTKYLEFVSSVDEAEALAAAKGINLAMETGIYPIQLETDSSQIFHLVWQEVEDLSETGEIVARVKGMLPDGDQRPFSFTRR

Query:  GGNEAAHNLARRALLQQENRV
         GN  AH LARRAL  QEN V
Subjt:  GGNEAAHNLARRALLQQENRV

A0A6J1CIF1 uncharacterized protein LOC1110112376.5e-2556.03Show/hide
Query:  ASLGVLIRDHRGQVLASGTKYLEFVSSVDEAEALAAAKGINLAMETGIYPIQLETDSSQIFHLVWQEVEDLSETGEIVARVKGMLPDGDQRPFSFTRRGG
        A LG++IR+ RGQV+AS TKYLE + SVD AEA+ A +G+ LA + G+ P+ LETDSS+IF+L  Q  EDLSETGEIV + K          F+F +R G
Subjt:  ASLGVLIRDHRGQVLASGTKYLEFVSSVDEAEALAAAKGINLAMETGIYPIQLETDSSQIFHLVWQEVEDLSETGEIVARVKGMLPDGDQRPFSFTRRGG

Query:  NEAAHNLARRALLQQE
        N+AAH LARRALL +E
Subjt:  NEAAHNLARRALLQQE

A0A6J1DAR4 uncharacterized protein LOC1110189543.8e-1747.41Show/hide
Query:  ASLGVLIRDHRGQVLASGTKYLEFVSSVDEAEALAAAKGINLAMETGIYPIQLETDSSQIFHLVWQEVEDLSETGEIVARVKGMLPDGDQRPFSFTRRGG
        A LG++I + RGQV+A+ TKYLE + SVD AEA+AA +G+ LA E G++P                 +EDLSETGEIV + K          F+F +R G
Subjt:  ASLGVLIRDHRGQVLASGTKYLEFVSSVDEAEALAAAKGINLAMETGIYPIQLETDSSQIFHLVWQEVEDLSETGEIVARVKGMLPDGDQRPFSFTRRGG

Query:  NEAAHNLARRALLQQE
        N+AAH LARRALL  E
Subjt:  NEAAHNLARRALLQQE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGTGATAACAAAAGTACGACAGACTGGACTAGCTCTTATATTTCCAAGTATCAGTGCAAGTTTGGGAGTTCTTATTAGAGATCACAGAGGTCAAGTTTTAGCGTC
AGGAACAAAATACTTGGAATTTGTGTCATCCGTTGATGAGGCCGAAGCCTTAGCTGCAGCAAAAGGGATCAATTTGGCAATGGAGACTGGCATCTACCCAATTCAATTGG
AGACCGATTCGTCCCAGATTTTCCACCTTGTCTGGCAAGAAGTGGAAGATCTCTCAGAAACGGGAGAAATTGTTGCGCGGGTGAAAGGAATGTTACCTGATGGAGATCAG
CGACCCTTCTCCTTTACTAGAAGGGGCGGAAATGAAGCTGCTCACAATCTAGCGAGAAGAGCTTTGCTGCAGCAGGAAAATCGGGTTGTCATACCGACCACTCAAGATGG
AAGTGAGGTCGCTCCATCTCAGGAATTGACAGCACCTTTATCTCAGGAGGAAACCATTCCTGGCTCGCAAGAGGTTGATCTGCTGACCTCGCAATGGGAATTTTGTTCGC
ACCTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGGTGATAACAAAAGTACGACAGACTGGACTAGCTCTTATATTTCCAAGTATCAGTGCAAGTTTGGGAGTTCTTATTAGAGATCACAGAGGTCAAGTTTTAGCGTC
AGGAACAAAATACTTGGAATTTGTGTCATCCGTTGATGAGGCCGAAGCCTTAGCTGCAGCAAAAGGGATCAATTTGGCAATGGAGACTGGCATCTACCCAATTCAATTGG
AGACCGATTCGTCCCAGATTTTCCACCTTGTCTGGCAAGAAGTGGAAGATCTCTCAGAAACGGGAGAAATTGTTGCGCGGGTGAAAGGAATGTTACCTGATGGAGATCAG
CGACCCTTCTCCTTTACTAGAAGGGGCGGAAATGAAGCTGCTCACAATCTAGCGAGAAGAGCTTTGCTGCAGCAGGAAAATCGGGTTGTCATACCGACCACTCAAGATGG
AAGTGAGGTCGCTCCATCTCAGGAATTGACAGCACCTTTATCTCAGGAGGAAACCATTCCTGGCTCGCAAGAGGTTGATCTGCTGACCTCGCAATGGGAATTTTGTTCGC
ACCTTTGA
Protein sequenceShow/hide protein sequence
MKVITKVRQTGLALIFPSISASLGVLIRDHRGQVLASGTKYLEFVSSVDEAEALAAAKGINLAMETGIYPIQLETDSSQIFHLVWQEVEDLSETGEIVARVKGMLPDGDQ
RPFSFTRRGGNEAAHNLARRALLQQENRVVIPTTQDGSEVAPSQELTAPLSQEETIPGSQEVDLLTSQWEFCSHL