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MS025641 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS025641
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold4:3996405..3996782
RNA-Seq ExpressionMS025641
SyntenyMS025641
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022131661.1 uncharacterized protein LOC111004786 [Momordica charantia]7.4e-1144.09Show/hide
Query:  WNPPEDHFLKLNVDAACRPNCSGFGLIIRDSSRSIMTAKSQVVPVSYSSLLVEIKAIIEGLKLAISLQSSHLQVESD---SVQLLNGEVSTMG
        W PP D  +K+N DAACR   +G GLIIRD    ++ AKS  +P+  + L  EI+ I+E LKLA S   + L VESD   +++L+ G++ +MG
Subjt:  WNPPEDHFLKLNVDAACRPNCSGFGLIIRDSSRSIMTAKSQVVPVSYSSLLVEIKAIIEGLKLAISLQSSHLQVESD---SVQLLNGEVSTMG

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]6.1e-1347.62Show/hide
Query:  RSTPARQPMV--WNPPEDHFLKLNVDAACRPNCSGFGLIIRDSSRSIMTAKSQVVPVSYSSLLVEIKAIIEGLKLAISLQSSHLQVESDS---VQLLNGE
        R+    +P+V  W P     LKLN DAACR   + FG IIRDSS S++ A S  VP   S LL EI+ I+EGLK A +   +HL+VESDS   +QL+  E
Subjt:  RSTPARQPMV--WNPPEDHFLKLNVDAACRPNCSGFGLIIRDSSRSIMTAKSQVVPVSYSSLLVEIKAIIEGLKLAISLQSSHLQVESDS---VQLLNGE

Query:  VSTMG
        + T G
Subjt:  VSTMG

XP_027109299.1 uncharacterized protein LOC113729174 [Coffea arabica]2.9e-0743.3Show/hide
Query:  QRSTPAR-QPMVWNPPEDHFLKLNVDAAC--RPNCSGFGLIIRDSSRSIMTAKSQVVPVSYSSLLVEIKAIIEGLKLAISLQSSHLQVESDSVQLLN
        +RS P R  PM W+ P + F+KLNVD A    P  SG G I+R SS  ++ A S       +++ V  KA+ EGLKL ++L   H++VE DS+ LLN
Subjt:  QRSTPAR-QPMVWNPPEDHFLKLNVDAAC--RPNCSGFGLIIRDSSRSIMTAKSQVVPVSYSSLLVEIKAIIEGLKLAISLQSSHLQVESDSVQLLN

XP_027154834.1 uncharacterized protein LOC113754771 [Coffea eugenioides]2.9e-0743.3Show/hide
Query:  QRSTPAR-QPMVWNPPEDHFLKLNVDAAC--RPNCSGFGLIIRDSSRSIMTAKSQVVPVSYSSLLVEIKAIIEGLKLAISLQSSHLQVESDSVQLLN
        +RS P R  PM W+ P + F+KLNVD A    P  SG G I+R SS  ++ A S       +++ V  KA+ EGLKL ++L   H++VE DS+ LLN
Subjt:  QRSTPAR-QPMVWNPPEDHFLKLNVDAAC--RPNCSGFGLIIRDSSRSIMTAKSQVVPVSYSSLLVEIKAIIEGLKLAISLQSSHLQVESDSVQLLN

XP_027156090.1 uncharacterized protein LOC113756735 [Coffea eugenioides]2.9e-0743.3Show/hide
Query:  QRSTPAR-QPMVWNPPEDHFLKLNVDAAC--RPNCSGFGLIIRDSSRSIMTAKSQVVPVSYSSLLVEIKAIIEGLKLAISLQSSHLQVESDSVQLLN
        +RS P R  PM W+ P + F+KLNVD A    P  SG G I+R SS  ++ A S       +++ V  KA+ EGLKL ++L   H++VE DS+ LLN
Subjt:  QRSTPAR-QPMVWNPPEDHFLKLNVDAAC--RPNCSGFGLIIRDSSRSIMTAKSQVVPVSYSSLLVEIKAIIEGLKLAISLQSSHLQVESDSVQLLN

TrEMBL top hitse value%identityAlignment
A0A6J1BQ49 uncharacterized protein LOC1110047863.6e-1144.09Show/hide
Query:  WNPPEDHFLKLNVDAACRPNCSGFGLIIRDSSRSIMTAKSQVVPVSYSSLLVEIKAIIEGLKLAISLQSSHLQVESD---SVQLLNGEVSTMG
        W PP D  +K+N DAACR   +G GLIIRD    ++ AKS  +P+  + L  EI+ I+E LKLA S   + L VESD   +++L+ G++ +MG
Subjt:  WNPPEDHFLKLNVDAACRPNCSGFGLIIRDSSRSIMTAKSQVVPVSYSSLLVEIKAIIEGLKLAISLQSSHLQVESD---SVQLLNGEVSTMG

A0A6J1DX30 uncharacterized protein LOC1110248742.9e-1347.62Show/hide
Query:  RSTPARQPMV--WNPPEDHFLKLNVDAACRPNCSGFGLIIRDSSRSIMTAKSQVVPVSYSSLLVEIKAIIEGLKLAISLQSSHLQVESDS---VQLLNGE
        R+    +P+V  W P     LKLN DAACR   + FG IIRDSS S++ A S  VP   S LL EI+ I+EGLK A +   +HL+VESDS   +QL+  E
Subjt:  RSTPARQPMV--WNPPEDHFLKLNVDAACRPNCSGFGLIIRDSSRSIMTAKSQVVPVSYSSLLVEIKAIIEGLKLAISLQSSHLQVESDS---VQLLNGE

Query:  VSTMG
        + T G
Subjt:  VSTMG

A0A6P6W1P9 uncharacterized protein LOC1137291741.4e-0743.3Show/hide
Query:  QRSTPAR-QPMVWNPPEDHFLKLNVDAAC--RPNCSGFGLIIRDSSRSIMTAKSQVVPVSYSSLLVEIKAIIEGLKLAISLQSSHLQVESDSVQLLN
        +RS P R  PM W+ P + F+KLNVD A    P  SG G I+R SS  ++ A S       +++ V  KA+ EGLKL ++L   H++VE DS+ LLN
Subjt:  QRSTPAR-QPMVWNPPEDHFLKLNVDAAC--RPNCSGFGLIIRDSSRSIMTAKSQVVPVSYSSLLVEIKAIIEGLKLAISLQSSHLQVESDSVQLLN

A0A7J9BKJ8 RNase H domain-containing protein1.6e-0640.96Show/hide
Query:  WNPPEDHFLKLNVDAACRPNCSGFGLIIRDSSRSIMTAKSQVVPVSYSSLLVEIKAIIEGLKLAISLQSSHLQVESDSVQLLN
        W  P + ++K+NVDAA    CSGFG + RD    ++      V  S  ++  E+KA+ EGLKLA  L+ + L +ESDS  L+N
Subjt:  WNPPEDHFLKLNVDAACRPNCSGFGLIIRDSSRSIMTAKSQVVPVSYSSLLVEIKAIIEGLKLAISLQSSHLQVESDSVQLLN

A0A7J9IVT2 RNase H domain-containing protein (Fragment)1.6e-0642.31Show/hide
Query:  WNPPEDHFLKLNVDAACRPNCSGFGLIIRDSSRSIMTAKSQVVPVSYSSLLVEIKAIIEGLKLAISLQSSHLQVESDS
        W  P + ++K+NVDAA    CSGFG ++RD    ++ A    V  S  ++  E+KA+ EGLKLA  L+ + L +ESDS
Subjt:  WNPPEDHFLKLNVDAACRPNCSGFGLIIRDSSRSIMTAKSQVVPVSYSSLLVEIKAIIEGLKLAISLQSSHLQVESDS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAACGCTCTACCCCAGCTCGCCAGCCCATGGTTTGGAATCCCCCTGAAGATCACTTCTTGAAGCTCAATGTCGATGCGGCTTGTAGACCCAATTGCTCAGGCTTCGG
TCTTATTATTCGAGATTCCAGCCGTTCGATCATGACCGCAAAATCCCAAGTGGTTCCCGTCAGCTATTCTTCGCTGCTTGTTGAAATCAAAGCCATCATCGAGGGTCTCA
AATTGGCAATCTCTCTTCAATCTTCTCATTTGCAGGTTGAATCAGACTCCGTTCAGCTCCTTAATGGTGAAGTTTCTACTATGGGCCGGGTTAAGCTGGCTGATGGAAGT
AAAATCTCTTTCCCTCTCTTTCTCTTCAATTTCTTTCACTCATGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCAACGCTCTACCCCAGCTCGCCAGCCCATGGTTTGGAATCCCCCTGAAGATCACTTCTTGAAGCTCAATGTCGATGCGGCTTGTAGACCCAATTGCTCAGGCTTCGG
TCTTATTATTCGAGATTCCAGCCGTTCGATCATGACCGCAAAATCCCAAGTGGTTCCCGTCAGCTATTCTTCGCTGCTTGTTGAAATCAAAGCCATCATCGAGGGTCTCA
AATTGGCAATCTCTCTTCAATCTTCTCATTTGCAGGTTGAATCAGACTCCGTTCAGCTCCTTAATGGTGAAGTTTCTACTATGGGCCGGGTTAAGCTGGCTGATGGAAGT
AAAATCTCTTTCCCTCTCTTTCTCTTCAATTTCTTTCACTCATGTTGA
Protein sequenceShow/hide protein sequence
MQRSTPARQPMVWNPPEDHFLKLNVDAACRPNCSGFGLIIRDSSRSIMTAKSQVVPVSYSSLLVEIKAIIEGLKLAISLQSSHLQVESDSVQLLNGEVSTMGRVKLADGS
KISFPLFLFNFFHSC