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MS025654 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS025654
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold490:27536..27844
RNA-Seq ExpressionMS025654
SyntenyMS025654
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ESR64134.1 hypothetical protein CICLE_v10010478mg, partial [Citrus clementina]2.0e-0636.05Show/hide
Query:  AICEGFKGLKEGGFYPSIAESDSLEVVRLLNGDAEDLTEIRWLINEAKTRASDAGVISIHHIARVGNDLAHEIARWAMVSERSLVW
        AI EG K ++E G  P + ESDSL V+RL++       EI W+I E +       V ++ HI+R  N  AH +A+ A+      +W
Subjt:  AICEGFKGLKEGGFYPSIAESDSLEVVRLLNGDAEDLTEIRWLINEAKTRASDAGVISIHHIARVGNDLAHEIARWAMVSERSLVW

GAY45467.1 hypothetical protein CUMW_089680 [Citrus unshiu]3.4e-0636.05Show/hide
Query:  AICEGFKGLKEGGFYPSIAESDSLEVVRLLNGDAEDLTEIRWLINEAKTRASDAGVISIHHIARVGNDLAHEIARWAMVSERSLVW
        AI EG K ++E G  P + ESDSL V+RL++       EI W+I E +       V ++ HI+R  N  AH +A+ A+      +W
Subjt:  AICEGFKGLKEGGFYPSIAESDSLEVVRLLNGDAEDLTEIRWLINEAKTRASDAGVISIHHIARVGNDLAHEIARWAMVSERSLVW

KAB2616931.1 hypothetical protein D8674_012800 [Pyrus ussuriensis x Pyrus communis]4.5e-0636.59Show/hide
Query:  GFKGLKEGGFYPSIAESDSLEVVRLLNGDAEDLTEIRWLINEAKTRASDAGVISIHHIARVGNDLAHEIARWAMVSERSLVW
        GF+   E GF+  I ESDSL+++  LNG + DL+ +R++I +AKT       +S  +I R  N++AH + R+ + S     W
Subjt:  GFKGLKEGGFYPSIAESDSLEVVRLLNGDAEDLTEIRWLINEAKTRASDAGVISIHHIARVGNDLAHEIARWAMVSERSLVW

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]7.4e-0941.46Show/hide
Query:  MAICEGFKGLKEGGFYPSIAESDSLEVVRLLNGDAEDLTEIRWLINEAKTRASDAGVISIHHIARVGNDLAHEIARWAMVSE
        MAICEG + +++    P   ESDSLE + LL+   +D TEI WL+ E      D  ++S+ HI+R  N +AH +AR AM ++
Subjt:  MAICEGFKGLKEGGFYPSIAESDSLEVVRLLNGDAEDLTEIRWLINEAKTRASDAGVISIHHIARVGNDLAHEIARWAMVSE

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]4.1e-0737.78Show/hide
Query:  MAICEGFKGLK--------EGGFYPSIAESDSLEVVRLLNGDAEDLTEIRWLINEAKTRASDAGVISIHHIARVGNDLAHEIARWAMVSE
        MAICEG + ++        +    P   ESDSLE + LL+   +D TEI WL+ E      D  ++S+ HI+R  N +AH++AR AM ++
Subjt:  MAICEGFKGLK--------EGGFYPSIAESDSLEVVRLLNGDAEDLTEIRWLINEAKTRASDAGVISIHHIARVGNDLAHEIARWAMVSE

TrEMBL top hitse value%identityAlignment
A0A2H5NZB3 RNase H domain-containing protein1.7e-0636.05Show/hide
Query:  AICEGFKGLKEGGFYPSIAESDSLEVVRLLNGDAEDLTEIRWLINEAKTRASDAGVISIHHIARVGNDLAHEIARWAMVSERSLVW
        AI EG K ++E G  P + ESDSL V+RL++       EI W+I E +       V ++ HI+R  N  AH +A+ A+      +W
Subjt:  AICEGFKGLKEGGFYPSIAESDSLEVVRLLNGDAEDLTEIRWLINEAKTRASDAGVISIHHIARVGNDLAHEIARWAMVSERSLVW

A0A5N5GSQ0 RNase H domain-containing protein2.2e-0636.59Show/hide
Query:  GFKGLKEGGFYPSIAESDSLEVVRLLNGDAEDLTEIRWLINEAKTRASDAGVISIHHIARVGNDLAHEIARWAMVSERSLVW
        GF+   E GF+  I ESDSL+++  LNG + DL+ +R++I +AKT       +S  +I R  N++AH + R+ + S     W
Subjt:  GFKGLKEGGFYPSIAESDSLEVVRLLNGDAEDLTEIRWLINEAKTRASDAGVISIHHIARVGNDLAHEIARWAMVSERSLVW

A0A6J1CP26 uncharacterized protein LOC1110134123.6e-0941.46Show/hide
Query:  MAICEGFKGLKEGGFYPSIAESDSLEVVRLLNGDAEDLTEIRWLINEAKTRASDAGVISIHHIARVGNDLAHEIARWAMVSE
        MAICEG + +++    P   ESDSLE + LL+   +D TEI WL+ E      D  ++S+ HI+R  N +AH +AR AM ++
Subjt:  MAICEGFKGLKEGGFYPSIAESDSLEVVRLLNGDAEDLTEIRWLINEAKTRASDAGVISIHHIARVGNDLAHEIARWAMVSE

A0A6J1DSV1 uncharacterized protein LOC1110236082.0e-0737.78Show/hide
Query:  MAICEGFKGLK--------EGGFYPSIAESDSLEVVRLLNGDAEDLTEIRWLINEAKTRASDAGVISIHHIARVGNDLAHEIARWAMVSE
        MAICEG + ++        +    P   ESDSLE + LL+   +D TEI WL+ E      D  ++S+ HI+R  N +AH++AR AM ++
Subjt:  MAICEGFKGLK--------EGGFYPSIAESDSLEVVRLLNGDAEDLTEIRWLINEAKTRASDAGVISIHHIARVGNDLAHEIARWAMVSE

V4WCI4 RNase H domain-containing protein (Fragment)9.7e-0736.05Show/hide
Query:  AICEGFKGLKEGGFYPSIAESDSLEVVRLLNGDAEDLTEIRWLINEAKTRASDAGVISIHHIARVGNDLAHEIARWAMVSERSLVW
        AI EG K ++E G  P + ESDSL V+RL++       EI W+I E +       V ++ HI+R  N  AH +A+ A+      +W
Subjt:  AICEGFKGLKEGGFYPSIAESDSLEVVRLLNGDAEDLTEIRWLINEAKTRASDAGVISIHHIARVGNDLAHEIARWAMVSERSLVW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTATTTGTGAAGGTTTTAAAGGTTTGAAGGAAGGAGGTTTTTACCCGAGTATAGCTGAATCAGACTCCCTCGAGGTGGTTCGTTTGCTGAATGGAGATGCTGAAGA
CCTCACTGAGATTCGATGGTTGATCAACGAGGCGAAAACTCGTGCTTCAGACGCCGGTGTAATTTCGATTCACCATATTGCGAGAGTTGGGAACGATTTGGCTCATGAAA
TTGCGCGTTGGGCAATGGTTTCAGAGAGATCGCTAGTGTGGGAGGCGTGTTCCCCGCAAGTTTTTAGGGCTTTCTGTTTGGTGCTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTATTTGTGAAGGTTTTAAAGGTTTGAAGGAAGGAGGTTTTTACCCGAGTATAGCTGAATCAGACTCCCTCGAGGTGGTTCGTTTGCTGAATGGAGATGCTGAAGA
CCTCACTGAGATTCGATGGTTGATCAACGAGGCGAAAACTCGTGCTTCAGACGCCGGTGTAATTTCGATTCACCATATTGCGAGAGTTGGGAACGATTTGGCTCATGAAA
TTGCGCGTTGGGCAATGGTTTCAGAGAGATCGCTAGTGTGGGAGGCGTGTTCCCCGCAAGTTTTTAGGGCTTTCTGTTTGGTGCTTTAG
Protein sequenceShow/hide protein sequence
MAICEGFKGLKEGGFYPSIAESDSLEVVRLLNGDAEDLTEIRWLINEAKTRASDAGVISIHHIARVGNDLAHEIARWAMVSERSLVWEACSPQVFRAFCLVL