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MS025657 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS025657
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase
Genome locationscaffold490:295610..299287
RNA-Seq ExpressionMS025657
SyntenyMS025657
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA3483859.1 reverse transcriptase [Gossypium australe]3.7e-0850Show/hide
Query:  LHGSDVSLWLIDGDFNEILSNDEKFGGRMRAERDIFAFQQVMDDCGLLDLGFRGPVWPVEGG
        LH S+   WL+ GDFNEI S+ EK GGR R+E  +  F+  ++DCGL+DLG+RG  +  E G
Subjt:  LHGSDVSLWLIDGDFNEILSNDEKFGGRMRAERDIFAFQQVMDDCGLLDLGFRGPVWPVEGG

KAG2635964.1 hypothetical protein PVAP13_2NG409003 [Panicum virgatum]8.7e-1039.56Show/hide
Query:  PAGRHDYLILESGLGLHGSDVSLWLIDGDFNEILSNDEKFGGRMRAERDIFAFQQVMDDCGLLDLGFRGPVWPVEGGWVFNWIQEAMARVQ
        P   H +L  E+   LH      WL+ GDFNEIL + EK GGR R++  + AFQ  + DCGL+D+GF G  +  + GW+   +   +A  Q
Subjt:  PAGRHDYLILESGLGLHGSDVSLWLIDGDFNEILSNDEKFGGRMRAERDIFAFQQVMDDCGLLDLGFRGPVWPVEGGWVFNWIQEAMARVQ

XP_022149484.1 uncharacterized protein LOC111017902 [Momordica charantia]5.7e-0955.93Show/hide
Query:  MKDVWRVHQNMRFELVRDNVYMIQFRSLLEKNLILNSGPFTFDNALLVLVSPTAEDRPI
        MK VWRVH + RFE +  N+Y+I F+SL EK+ +L+SGP+TF+ +LLVL SPTA ++P+
Subjt:  MKDVWRVHQNMRFELVRDNVYMIQFRSLLEKNLILNSGPFTFDNALLVLVSPTAEDRPI

XP_022158119.1 uncharacterized protein LOC111024676, partial [Momordica charantia]4.3e-0950.85Show/hide
Query:  MKDVWRVHQNMRFELVRDNVYMIQFRSLLEKNLILNSGPFTFDNALLVLVSPTAEDRPI
        MK VW++H++ R E    N+Y+I F++++EK  +L+SGP+TFD +L VLVSPTA D+P+
Subjt:  MKDVWRVHQNMRFELVRDNVYMIQFRSLLEKNLILNSGPFTFDNALLVLVSPTAEDRPI

XP_042942656.1 uncharacterized protein LOC122276824 [Carya illinoinensis]2.8e-0863.83Show/hide
Query:  WLIDGDFNEILSNDEKFGGRMRAERDIFAFQQVMDDCGLLDLGFRGP
        WL+ GDFNEIL   EK+GGR R ER + AF+QV++DC L D+GFRGP
Subjt:  WLIDGDFNEILSNDEKFGGRMRAERDIFAFQQVMDDCGLLDLGFRGP

TrEMBL top hitse value%identityAlignment
A0A2N9GJV1 Uncharacterized protein2.7e-0946.25Show/hide
Query:  GYFYSRLLLSPAGRHDYLILESGLGLHGSDVSLWLIDGDFNEILSNDEKFGGRMRAERDIFAFQQVMDDCGLLDLGFRGP
        G++ SR +   AG  D L +     L G     WL  GDFNE+L  +EK+G   R E  + AF+QV+DDCG LDLGF GP
Subjt:  GYFYSRLLLSPAGRHDYLILESGLGLHGSDVSLWLIDGDFNEILSNDEKFGGRMRAERDIFAFQQVMDDCGLLDLGFRGP

A0A5B6WPQ1 Reverse transcriptase1.8e-0850Show/hide
Query:  LHGSDVSLWLIDGDFNEILSNDEKFGGRMRAERDIFAFQQVMDDCGLLDLGFRGPVWPVEGG
        LH S+   WL+ GDFNEI S+ EK GGR R+E  +  F+  ++DCGL+DLG+RG  +  E G
Subjt:  LHGSDVSLWLIDGDFNEILSNDEKFGGRMRAERDIFAFQQVMDDCGLLDLGFRGPVWPVEGG

A0A5B6WZS1 Reverse transcriptase2.3e-0859.57Show/hide
Query:  LWLIDGDFNEILSNDEKFGGRMRAERDIFAFQQVMDDCGLLDLGFRG
        LWL+ GDFNEIL + EK GG+MR ER + AF++ ++DC L+DLGF+G
Subjt:  LWLIDGDFNEILSNDEKFGGRMRAERDIFAFQQVMDDCGLLDLGFRG

A0A6J1D765 uncharacterized protein LOC1110179022.7e-0955.93Show/hide
Query:  MKDVWRVHQNMRFELVRDNVYMIQFRSLLEKNLILNSGPFTFDNALLVLVSPTAEDRPI
        MK VWRVH + RFE +  N+Y+I F+SL EK+ +L+SGP+TF+ +LLVL SPTA ++P+
Subjt:  MKDVWRVHQNMRFELVRDNVYMIQFRSLLEKNLILNSGPFTFDNALLVLVSPTAEDRPI

A0A6J1DYG3 uncharacterized protein LOC1110246762.1e-0950.85Show/hide
Query:  MKDVWRVHQNMRFELVRDNVYMIQFRSLLEKNLILNSGPFTFDNALLVLVSPTAEDRPI
        MK VW++H++ R E    N+Y+I F++++EK  +L+SGP+TFD +L VLVSPTA D+P+
Subjt:  MKDVWRVHQNMRFELVRDNVYMIQFRSLLEKNLILNSGPFTFDNALLVLVSPTAEDRPI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGACGTTTGGCGGGTGCATCAAAATATGCGTTTTGAACTGGTCCGGGATAATGTCTATATGATTCAGTTTCGTTCGCTTTTGGAGAAGAATCTGATTTTGAATTC
GGGCCCTTTCACGTTCGACAATGCTTTATTAGTGCTAGTTTCTCCGACCGCAGAGGATCGGCCGATACCGTGGCGTTTACTCACTGCTCTTTCTGGGTTCAGATCGACAG
GTGGTCCCTCGGGATGGTCGGCGTTCTACTCGAATTTTGGATCCGCCTTGGGTAGCGGCGACAGACCACCGACTTCTCTAATCGGGTCGGGTACGCCGGTACCATTGGGC
TCTAATTCTTGTTCTCTCCCTTTGGGCCCATCTCTTGTAGCTGCTGATATTTGGCCGCCTAGTGTCAATCCAAGTGCAAACAACATTCCTATTGGTGGCCCTGTGCCTGC
GTCTACACCATCTTTGCACAAAAATGGAAACGTCGGGCTTAGGCCCTCTTTTGGATACTTCTACTCAAGGCTGTTACTCAGCCCTGCCGGACGCCATGACTATCTTATTT
TGGAATCGGGGCTTGGGCTTCATGGGAGCGATGTGTCGCTTTGGCTTATCGATGGTGATTTCAATGAGATTTTAAGTAATGACGAGAAATTTGGGGGGCGAATGCGCGCT
GAACGTGATATTTTTGCCTTCCAGCAAGTGATGGATGACTGTGGTTTGTTGGACTTGGGTTTTCGGGGGCCCGTTTGGCCAGTCGAAGGTGGGTGGGTATTCAACTGGAT
TCAAGAGGCTATGGCTCGGGTTCAAGAGGCCATTGCGGCTCTCCCATTTCAGGCTTCCGAGGATTCCCTTGTTTCAGCAGAAGCTCATCTTGAGAACCTCCTATTAGAAG
AAGAACAATACTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAAGACGTTTGGCGGGTGCATCAAAATATGCGTTTTGAACTGGTCCGGGATAATGTCTATATGATTCAGTTTCGTTCGCTTTTGGAGAAGAATCTGATTTTGAATTC
GGGCCCTTTCACGTTCGACAATGCTTTATTAGTGCTAGTTTCTCCGACCGCAGAGGATCGGCCGATACCGTGGCGTTTACTCACTGCTCTTTCTGGGTTCAGATCGACAG
GTGGTCCCTCGGGATGGTCGGCGTTCTACTCGAATTTTGGATCCGCCTTGGGTAGCGGCGACAGACCACCGACTTCTCTAATCGGGTCGGGTACGCCGGTACCATTGGGC
TCTAATTCTTGTTCTCTCCCTTTGGGCCCATCTCTTGTAGCTGCTGATATTTGGCCGCCTAGTGTCAATCCAAGTGCAAACAACATTCCTATTGGTGGCCCTGTGCCTGC
GTCTACACCATCTTTGCACAAAAATGGAAACGTCGGGCTTAGGCCCTCTTTTGGATACTTCTACTCAAGGCTGTTACTCAGCCCTGCCGGACGCCATGACTATCTTATTT
TGGAATCGGGGCTTGGGCTTCATGGGAGCGATGTGTCGCTTTGGCTTATCGATGGTGATTTCAATGAGATTTTAAGTAATGACGAGAAATTTGGGGGGCGAATGCGCGCT
GAACGTGATATTTTTGCCTTCCAGCAAGTGATGGATGACTGTGGTTTGTTGGACTTGGGTTTTCGGGGGCCCGTTTGGCCAGTCGAAGGTGGGTGGGTATTCAACTGGAT
TCAAGAGGCTATGGCTCGGGTTCAAGAGGCCATTGCGGCTCTCCCATTTCAGGCTTCCGAGGATTCCCTTGTTTCAGCAGAAGCTCATCTTGAGAACCTCCTATTAGAAG
AAGAACAATACTAG
Protein sequenceShow/hide protein sequence
MKDVWRVHQNMRFELVRDNVYMIQFRSLLEKNLILNSGPFTFDNALLVLVSPTAEDRPIPWRLLTALSGFRSTGGPSGWSAFYSNFGSALGSGDRPPTSLIGSGTPVPLG
SNSCSLPLGPSLVAADIWPPSVNPSANNIPIGGPVPASTPSLHKNGNVGLRPSFGYFYSRLLLSPAGRHDYLILESGLGLHGSDVSLWLIDGDFNEILSNDEKFGGRMRA
ERDIFAFQQVMDDCGLLDLGFRGPVWPVEGGWVFNWIQEAMARVQEAIAALPFQASEDSLVSAEAHLENLLLEEEQY