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MS025676 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS025676
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionMYB transcription factor
Genome locationscaffold399:309071..309598
RNA-Seq ExpressionMS025676
SyntenyMS025676
Gene Ontology termsGO:0006334 - nucleosome assembly (biological process)
GO:0006914 - autophagy (biological process)
GO:0019684 - photosynthesis, light reaction (biological process)
GO:0050821 - protein stabilization (biological process)
GO:0000786 - nucleosome (cellular component)
GO:0005730 - nucleolus (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0009523 - photosystem II (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003724 - RNA helicase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0016787 - hydrolase activity (molecular function)
GO:0042301 - phosphate ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAD5507654.1 hypothetical protein E3N88_15357 [Mikania micrantha]2.9e-2978.05Show/hide
Query:  VEGLRVVNFFSRRRSNDGGFLSPPSNPRAQPWTGGGNYQAGVRGANGIRYPSSPSRKRWILGAVRIDPCSAVANALSIPPGE
        ++ ++ ++    R+++ GGFLSPPSNPRAQ WTGGGNYQAGVRGANGIRYPSSPSRKRWILG VRIDPCSAVANALSIPPGE
Subjt:  VEGLRVVNFFSRRRSNDGGFLSPPSNPRAQPWTGGGNYQAGVRGANGIRYPSSPSRKRWILGAVRIDPCSAVANALSIPPGE
KAF5204816.1 hypothetical protein FRX31_005596 [Thalictrum thalictroides]6.1e-3592.5Show/hide
Query:  RRSNDGGFLSPPSNPRAQPWTGGGNYQAGVRGANGIRYPSSPSRKRWILGAVRIDPCSAVANALSIPPGEYVRKNETQRN
        R+++ GGF SPPSNPRAQPWTGGGN QAGVRGANGIRYPSSPSRKRWILGAVRIDPCSAVANALSIPPGEYVRKNETQRN
Subjt:  RRSNDGGFLSPPSNPRAQPWTGGGNYQAGVRGANGIRYPSSPSRKRWILGAVRIDPCSAVANALSIPPGEYVRKNETQRN
KAG5568286.1 hypothetical protein H5410_064707 [Solanum commersonii]1.2e-3593.67Show/hide
Query:  RRSNDGGFLSPPSNPRAQPWTGGGNYQAGVRGANGIRYPSSPSRKRWILGAVRIDPCSAVANALSIPPGEYVRKNETQR
        R+++ GGFLSPPSNPRAQPWTGGGNYQAGVRGANGIRYPSSPSRKRWILGAVRIDPCSAVANALSIPPGEYVRKNETQ+
Subjt:  RRSNDGGFLSPPSNPRAQPWTGGGNYQAGVRGANGIRYPSSPSRKRWILGAVRIDPCSAVANALSIPPGEYVRKNETQR
KAG9438519.1 hypothetical protein H6P81_021534 [Aristolochia fimbriata]8.8e-4276.42Show/hide
Query:  MGESLTEQCRVEVEGLRVVNFFSRRRSND--------------------GGFLSPPSNPRAQPWTGGGNYQAGVRGANGIRYPSSPSRKRWILGAVRIDP
        MGESLTEQCRVEVEG RVVNFFSRRRSND                    GGF SPPSNPRAQPWTGGGNYQAGV      RYPSSPSRKRWILGAVRIDP
Subjt:  MGESLTEQCRVEVEGLRVVNFFSRRRSND--------------------GGFLSPPSNPRAQPWTGGGNYQAGVRGANGIRYPSSPSRKRWILGAVRIDP

Query:  CSAVANALSIPPGEYVRKNETQR
        CSAVANALSIPPGEYVRKNETQ+
Subjt:  CSAVANALSIPPGEYVRKNETQR
PPS03373.1 hypothetical protein GOBAR_AA17289 [Gossypium barbadense]9.8e-3370.8Show/hide
Query:  MGESLTEQCRVEVEGLRVVNFFSRRRSND--------------------GGFLSPPSNPRAQPWTGGGNYQAGVRGANGIRYPSSPSRKRWILGAVRIDP
        MGESLTEQCRVEVEG RVVNFFSRRRSND                    GGFLSPPSNPRAQPWTGGGNYQAGV          SPSRKRWILG VRIDP
Subjt:  MGESLTEQCRVEVEGLRVVNFFSRRRSND--------------------GGFLSPPSNPRAQPWTGGGNYQAGVRGANGIRYPSSPSRKRWILGAVRIDP

Query:  CSAVANALSIPPG
        CSAVANAL+IPPG
Subjt:  CSAVANALSIPPG
TrEMBL top hitse value%identityAlignment
A0A2N9GIA5 Uncharacterized protein ycf683.4e-3180.49Show/hide
Query:  VEGLRVVNFFSRRRSNDGGFLSPPSNPRAQPWTGGGNYQAGVRGANGIRYPSSPSRKRWILGAVRIDPCSAVANALSIPPGE
        ++ ++ ++    R+++ GGFLSPPSNPRAQPWTGGGNYQAGVRGANGIRYPSSPSRKRWILGAVRIDPCSAVANALSIPPGE
Subjt:  VEGLRVVNFFSRRRSNDGGFLSPPSNPRAQPWTGGGNYQAGVRGANGIRYPSSPSRKRWILGAVRIDPCSAVANALSIPPGE
A0A2N9I678 Uncharacterized protein ycf683.4e-3180.49Show/hide
Query:  VEGLRVVNFFSRRRSNDGGFLSPPSNPRAQPWTGGGNYQAGVRGANGIRYPSSPSRKRWILGAVRIDPCSAVANALSIPPGE
        ++ ++ ++    R+++ GGFLSPPSNPRAQPWTGGGNYQAGVRGANGIRYPSSPSRKRWILGAVRIDPCSAVANALSIPPGE
Subjt:  VEGLRVVNFFSRRRSNDGGFLSPPSNPRAQPWTGGGNYQAGVRGANGIRYPSSPSRKRWILGAVRIDPCSAVANALSIPPGE
A0A2N9ID32 Uncharacterized protein ycf682.6e-3179.76Show/hide
Query:  VEGLRVVNFFSRRRSNDGGFLSPPSNPRAQPWTGGGNYQAGVRGANGIRYPSSPSRKRWILGAVRIDPCSAVANALSIPPGEYV
        ++ ++ ++    R+++ GGFLSPPSNPRAQPWTGGGNYQAGVRGANGIRYPSSPSRKRWILGAVRIDPCSAVANALSIPPGE V
Subjt:  VEGLRVVNFFSRRRSNDGGFLSPPSNPRAQPWTGGGNYQAGVRGANGIRYPSSPSRKRWILGAVRIDPCSAVANALSIPPGEYV
A0A2P5XJ56 Uncharacterized protein ycf684.7e-3370.8Show/hide
Query:  MGESLTEQCRVEVEGLRVVNFFSRRRSND--------------------GGFLSPPSNPRAQPWTGGGNYQAGVRGANGIRYPSSPSRKRWILGAVRIDP
        MGESLTEQCRVEVEG RVVNFFSRRRSND                    GGFLSPPSNPRAQPWTGGGNYQAGV          SPSRKRWILG VRIDP
Subjt:  MGESLTEQCRVEVEGLRVVNFFSRRRSND--------------------GGFLSPPSNPRAQPWTGGGNYQAGVRGANGIRYPSSPSRKRWILGAVRIDP

Query:  CSAVANALSIPPG
        CSAVANAL+IPPG
Subjt:  CSAVANALSIPPG
A0A7J6X4T9 Uncharacterized protein3.0e-3592.5Show/hide
Query:  RRSNDGGFLSPPSNPRAQPWTGGGNYQAGVRGANGIRYPSSPSRKRWILGAVRIDPCSAVANALSIPPGEYVRKNETQRN
        R+++ GGF SPPSNPRAQPWTGGGN QAGVRGANGIRYPSSPSRKRWILGAVRIDPCSAVANALSIPPGEYVRKNETQRN
Subjt:  RRSNDGGFLSPPSNPRAQPWTGGGNYQAGVRGANGIRYPSSPSRKRWILGAVRIDPCSAVANALSIPPGEYVRKNETQRN
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTAGAAGGCCTACGGGTCGTGAACTTCTTTTCCCGGAGAAGAAGCAATGACGGTGGCTTTTTAAGTCCGCCGTC
AAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGGGAGCGAATGGGATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAG
GCGCTGTGCGTATCGACCCGTGCAGTGCTGTAGCTAACGCGTTAAGTATTCCACCTGGGGAGTACGTTCGCAAGAATGAAACTCAAAGGAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTAGAAGGCCTACGGGTCGTGAACTTCTTTTCCCGGAGAAGAAGCAATGACGGTGGCTTTTTAAGTCCGCCGTC
AAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGGGAGCGAATGGGATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAG
GCGCTGTGCGTATCGACCCGTGCAGTGCTGTAGCTAACGCGTTAAGTATTCCACCTGGGGAGTACGTTCGCAAGAATGAAACTCAAAGGAATTGA
Protein sequenceShow/hide protein sequence
MGESLTEQCRVEVEGLRVVNFFSRRRSNDGGFLSPPSNPRAQPWTGGGNYQAGVRGANGIRYPSSPSRKRWILGAVRIDPCSAVANALSIPPGEYVRKNETQRN