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MS025677 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS025677
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold1036:15686..16831
RNA-Seq ExpressionMS025677
SyntenyMS025677
Gene Ontology termsNA
InterPro domainsIPR025558 - Domain of unknown function DUF4283


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_018852674.2 uncharacterized protein LOC109014626 [Juglans regia]5.0e-1331.22Show/hide
Query:  ELLEQWKRFSLTSAEEEVTVDVDLGVSEEAGRCLEACLAGKLLMSRIISYE----DRGPLSILQKPLKTMK-----------------------------
        +L EQW +  L   +EE T+  D  V EE     E  L GK+ M R IS E        +  + KP K ++                             
Subjt:  ELLEQWKRFSLTSAEEEVTVDVDLGVSEEAGRCLEACLAGKLLMSRIISYE----DRGPLSILQKPLKTMK-----------------------------

Query:  -------------PSDLEFKIVSFWTHFYNLPLECMTKSMAVRLGNAVSVFEEADCDTDGLGWGESLRVKVKYDVMKPLRRGLKINIHG
                     P  L F    FW  F+NLPL CM +    +LGN + V E+ D   DG GWG  LRV +  D+ KPL RG  IN+ G
Subjt:  -------------PSDLEFKIVSFWTHFYNLPLECMTKSMAVRLGNAVSVFEEADCDTDGLGWGESLRVKVKYDVMKPLRRGLKINIHG

XP_022132681.1 uncharacterized protein LOC111005481 [Momordica charantia]1.1e-2838.58Show/hide
Query:  MATMELLEQWKRFSLTSAEEEVTVDVDLGVSEEAGRCLEACLAGKLLMSRIIS-----------------------------------YEDR------GP
        MA   LLE+WK F LTS E+++ VD+D    E  G+CLE  L  KLL  R IS                                     DR      GP
Subjt:  MATMELLEQWKRFSLTSAEEEVTVDVDLGVSEEAGRCLEACLAGKLLMSRIIS-----------------------------------YEDR------GP

Query:  ------LSILQKPLKTMKPSDLEFKIVSFWTHFYNLPLECMTKSMAVRLGNAVSVFEEADCDTDGLGWGESLRVKVKYDVMKPLRRGLKINIHGLMG
              L I+  P+   KP D++F+ VS W HF++L L CM K+MA RLGNA+ +FE+ + + +   WG  LRV+V++DVMKPL RG+K+N+ G MG
Subjt:  ------LSILQKPLKTMKPSDLEFKIVSFWTHFYNLPLECMTKSMAVRLGNAVSVFEEADCDTDGLGWGESLRVKVKYDVMKPLRRGLKINIHGLMG

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]8.9e-2637.7Show/hide
Query:  LLEQWKRFSLTSAEEEVTVDVDLGVSEEAGRCLEACLAGKLLMSRIISYE----------------------------------------DRGP------
        LL  W++F LTS E+E+ +DVD+   + A + L   L GKLL  RIIS +                                          GP      
Subjt:  LLEQWKRFSLTSAEEEVTVDVDLGVSEEAGRCLEACLAGKLLMSRIISYE----------------------------------------DRGP------

Query:  LSILQKPLKTMKPSDLEFKIVSFWTHFYNLPLECMTKSMAVRLGNAVSVFEEADCDTDGLGWGESLRVKVKYDVMKPLRRGLKINIHGLMG
        L +LQKP  +   S+LEF  V+FW H ++LP+  + K+MA+RLGNA+  F + DC+  G  WG SLR++V  D+ KPLRRG+KINI G MG
Subjt:  LSILQKPLKTMKPSDLEFKIVSFWTHFYNLPLECMTKSMAVRLGNAVSVFEEADCDTDGLGWGESLRVKVKYDVMKPLRRGLKINIHGLMG

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]2.1e-2739.09Show/hide
Query:  MATMELLEQWKRFSLTSAEEEVTVDVDLGVSEEAGRCLEACLAGKLLMSRII------------------SYE-----------------DR------GP
        MAT +LLE+WK F LTS EEE  +DVD       G  LE  L GKL + R I                  ++E                 DR      GP
Subjt:  MATMELLEQWKRFSLTSAEEEVTVDVDLGVSEEAGRCLEACLAGKLLMSRII------------------SYE-----------------DR------GP

Query:  ------LSILQKPLKTMKPSDLEFKIVSFWTHFYNLPLECMTKSMAVRLGNAVSVFEEADCDTDGLGWGESLRVKVKYDVMKPLRRGLKINIHGLMG
              L ++ KP+  + PS+L+F  +  W  F++LPL C+T+ MA+RLGNA+  FEEADCD     WG +LRV+V  D+ KPLRRG+K+N+ G +G
Subjt:  ------LSILQKPLKTMKPSDLEFKIVSFWTHFYNLPLECMTKSMAVRLGNAVSVFEEADCDTDGLGWGESLRVKVKYDVMKPLRRGLKINIHGLMG

XP_035551148.1 uncharacterized protein LOC118349711 [Juglans regia]6.6e-1331.22Show/hide
Query:  ELLEQWKRFSLTSAEEEVTVDVDLGVSEEAGRCLEACLAGKLLMSRIISYE----DRGPLSILQKPLKTMK-----------------------------
        +L EQW + +L   EEE  +  D  V EE     E  L GK+ M R IS E        +  + KP K ++                             
Subjt:  ELLEQWKRFSLTSAEEEVTVDVDLGVSEEAGRCLEACLAGKLLMSRIISYE----DRGPLSILQKPLKTMK-----------------------------

Query:  -------------PSDLEFKIVSFWTHFYNLPLECMTKSMAVRLGNAVSVFEEADCDTDGLGWGESLRVKVKYDVMKPLRRGLKINIHG
                     P  L F    FW  F+NLPL CM +    +LGN + V E+ D   DG GWG  LRV +  D+ KPL RG  IN+ G
Subjt:  -------------PSDLEFKIVSFWTHFYNLPLECMTKSMAVRLGNAVSVFEEADCDTDGLGWGESLRVKVKYDVMKPLRRGLKINIHG

TrEMBL top hitse value%identityAlignment
A0A2I4H947 uncharacterized protein LOC1090146262.4e-1331.22Show/hide
Query:  ELLEQWKRFSLTSAEEEVTVDVDLGVSEEAGRCLEACLAGKLLMSRIISYE----DRGPLSILQKPLKTMK-----------------------------
        +L EQW +  L   +EE T+  D  V EE     E  L GK+ M R IS E        +  + KP K ++                             
Subjt:  ELLEQWKRFSLTSAEEEVTVDVDLGVSEEAGRCLEACLAGKLLMSRIISYE----DRGPLSILQKPLKTMK-----------------------------

Query:  -------------PSDLEFKIVSFWTHFYNLPLECMTKSMAVRLGNAVSVFEEADCDTDGLGWGESLRVKVKYDVMKPLRRGLKINIHG
                     P  L F    FW  F+NLPL CM +    +LGN + V E+ D   DG GWG  LRV +  D+ KPL RG  IN+ G
Subjt:  -------------PSDLEFKIVSFWTHFYNLPLECMTKSMAVRLGNAVSVFEEADCDTDGLGWGESLRVKVKYDVMKPLRRGLKINIHG

A0A6J1BSZ1 uncharacterized protein LOC1110054815.4e-2938.58Show/hide
Query:  MATMELLEQWKRFSLTSAEEEVTVDVDLGVSEEAGRCLEACLAGKLLMSRIIS-----------------------------------YEDR------GP
        MA   LLE+WK F LTS E+++ VD+D    E  G+CLE  L  KLL  R IS                                     DR      GP
Subjt:  MATMELLEQWKRFSLTSAEEEVTVDVDLGVSEEAGRCLEACLAGKLLMSRIIS-----------------------------------YEDR------GP

Query:  ------LSILQKPLKTMKPSDLEFKIVSFWTHFYNLPLECMTKSMAVRLGNAVSVFEEADCDTDGLGWGESLRVKVKYDVMKPLRRGLKINIHGLMG
              L I+  P+   KP D++F+ VS W HF++L L CM K+MA RLGNA+ +FE+ + + +   WG  LRV+V++DVMKPL RG+K+N+ G MG
Subjt:  ------LSILQKPLKTMKPSDLEFKIVSFWTHFYNLPLECMTKSMAVRLGNAVSVFEEADCDTDGLGWGESLRVKVKYDVMKPLRRGLKINIHGLMG

A0A6J1DU55 uncharacterized protein LOC1110231354.3e-2637.7Show/hide
Query:  LLEQWKRFSLTSAEEEVTVDVDLGVSEEAGRCLEACLAGKLLMSRIISYE----------------------------------------DRGP------
        LL  W++F LTS E+E+ +DVD+   + A + L   L GKLL  RIIS +                                          GP      
Subjt:  LLEQWKRFSLTSAEEEVTVDVDLGVSEEAGRCLEACLAGKLLMSRIISYE----------------------------------------DRGP------

Query:  LSILQKPLKTMKPSDLEFKIVSFWTHFYNLPLECMTKSMAVRLGNAVSVFEEADCDTDGLGWGESLRVKVKYDVMKPLRRGLKINIHGLMG
        L +LQKP  +   S+LEF  V+FW H ++LP+  + K+MA+RLGNA+  F + DC+  G  WG SLR++V  D+ KPLRRG+KINI G MG
Subjt:  LSILQKPLKTMKPSDLEFKIVSFWTHFYNLPLECMTKSMAVRLGNAVSVFEEADCDTDGLGWGESLRVKVKYDVMKPLRRGLKINIHGLMG

A0A6J1DX30 uncharacterized protein LOC1110248741.0e-2739.09Show/hide
Query:  MATMELLEQWKRFSLTSAEEEVTVDVDLGVSEEAGRCLEACLAGKLLMSRII------------------SYE-----------------DR------GP
        MAT +LLE+WK F LTS EEE  +DVD       G  LE  L GKL + R I                  ++E                 DR      GP
Subjt:  MATMELLEQWKRFSLTSAEEEVTVDVDLGVSEEAGRCLEACLAGKLLMSRII------------------SYE-----------------DR------GP

Query:  ------LSILQKPLKTMKPSDLEFKIVSFWTHFYNLPLECMTKSMAVRLGNAVSVFEEADCDTDGLGWGESLRVKVKYDVMKPLRRGLKINIHGLMG
              L ++ KP+  + PS+L+F  +  W  F++LPL C+T+ MA+RLGNA+  FEEADCD     WG +LRV+V  D+ KPLRRG+K+N+ G +G
Subjt:  ------LSILQKPLKTMKPSDLEFKIVSFWTHFYNLPLECMTKSMAVRLGNAVSVFEEADCDTDGLGWGESLRVKVKYDVMKPLRRGLKINIHGLMG

A0A6P9F5H1 uncharacterized protein LOC1183497113.2e-1331.22Show/hide
Query:  ELLEQWKRFSLTSAEEEVTVDVDLGVSEEAGRCLEACLAGKLLMSRIISYE----DRGPLSILQKPLKTMK-----------------------------
        +L EQW + +L   EEE  +  D  V EE     E  L GK+ M R IS E        +  + KP K ++                             
Subjt:  ELLEQWKRFSLTSAEEEVTVDVDLGVSEEAGRCLEACLAGKLLMSRIISYE----DRGPLSILQKPLKTMK-----------------------------

Query:  -------------PSDLEFKIVSFWTHFYNLPLECMTKSMAVRLGNAVSVFEEADCDTDGLGWGESLRVKVKYDVMKPLRRGLKINIHG
                     P  L F    FW  F+NLPL CM +    +LGN + V E+ D   DG GWG  LRV +  D+ KPL RG  IN+ G
Subjt:  -------------PSDLEFKIVSFWTHFYNLPLECMTKSMAVRLGNAVSVFEEADCDTDGLGWGESLRVKVKYDVMKPLRRGLKINIHG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACTTGTGGGCCCATGTGCTTCGTCGTGGATCTAATGTCAAATCAAGGGTCGAGATCATACGAGATTTCGGATTGGACTGCATGAGGATCGAGGGGAGTCGAGTTAG
GGTTCTCGGCCTTTTGGCCGAGAACACCTGGGCGCCGAGGCCTGGTCGGTGCCGAGCACAGCTCGGAGCCGACCACAGGTCGGTCCGGGTTGACCCGGGCCAACGGTCTT
CAATGATTCCTCTTCTGTCGCTTCGTATGGCGACAATGGAACTATTGGAACAATGGAAACGTTTTAGTCTAACATCCGCTGAGGAGGAGGTAACGGTGGATGTGGACTTA
GGAGTGTCGGAAGAAGCTGGACGATGTCTAGAGGCATGCCTTGCTGGGAAACTTCTTATGTCGAGAATTATCTCTTATGAGGACCGTGGTCCTTTATCGATCCTTCAGAA
ACCGCTAAAGACGATGAAGCCGTCAGATTTGGAGTTCAAAATTGTATCCTTTTGGACCCACTTTTATAATCTCCCATTGGAGTGCATGACTAAGTCTATGGCAGTACGGT
TGGGAAACGCTGTTAGTGTGTTTGAAGAGGCTGATTGTGATACTGATGGCTTAGGGTGGGGAGAAAGCCTAAGAGTGAAAGTCAAGTATGATGTCATGAAACCTCTCAGG
CGAGGCTTAAAGATTAACATTCATGGGCTGATGGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGACTTGTGGGCCCATGTGCTTCGTCGTGGATCTAATGTCAAATCAAGGGTCGAGATCATACGAGATTTCGGATTGGACTGCATGAGGATCGAGGGGAGTCGAGTTAG
GGTTCTCGGCCTTTTGGCCGAGAACACCTGGGCGCCGAGGCCTGGTCGGTGCCGAGCACAGCTCGGAGCCGACCACAGGTCGGTCCGGGTTGACCCGGGCCAACGGTCTT
CAATGATTCCTCTTCTGTCGCTTCGTATGGCGACAATGGAACTATTGGAACAATGGAAACGTTTTAGTCTAACATCCGCTGAGGAGGAGGTAACGGTGGATGTGGACTTA
GGAGTGTCGGAAGAAGCTGGACGATGTCTAGAGGCATGCCTTGCTGGGAAACTTCTTATGTCGAGAATTATCTCTTATGAGGACCGTGGTCCTTTATCGATCCTTCAGAA
ACCGCTAAAGACGATGAAGCCGTCAGATTTGGAGTTCAAAATTGTATCCTTTTGGACCCACTTTTATAATCTCCCATTGGAGTGCATGACTAAGTCTATGGCAGTACGGT
TGGGAAACGCTGTTAGTGTGTTTGAAGAGGCTGATTGTGATACTGATGGCTTAGGGTGGGGAGAAAGCCTAAGAGTGAAAGTCAAGTATGATGTCATGAAACCTCTCAGG
CGAGGCTTAAAGATTAACATTCATGGGCTGATGGGATGA
Protein sequenceShow/hide protein sequence
MDLWAHVLRRGSNVKSRVEIIRDFGLDCMRIEGSRVRVLGLLAENTWAPRPGRCRAQLGADHRSVRVDPGQRSSMIPLLSLRMATMELLEQWKRFSLTSAEEEVTVDVDL
GVSEEAGRCLEACLAGKLLMSRIISYEDRGPLSILQKPLKTMKPSDLEFKIVSFWTHFYNLPLECMTKSMAVRLGNAVSVFEEADCDTDGLGWGESLRVKVKYDVMKPLR
RGLKINIHGLMG