CuGenDBv2

Gene ID	MS025747
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	protein LOW PSII ACCUMULATION 3, chloroplastic
Genome location	scaffold813:741915..746970
RNA-Seq Expression	MS025747
Synteny	MS025747
Gene Ontology terms	NA
InterPro domains	IPR018962 - Domain of unknown function DUF1995 IPR044687 - Protein LOW PSII ACCUMULATION 3

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6575630.1 Protein LOW PSII ACCUMULATION 3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

4.3e-153

72.54

Show/hide

Query:  MAIMAFLSSPLHSPSLVR---NKFLLSPLSSSSFSALRRCTPSSLSAAQTFASSRFCFRIHCTDKERAAPVTQRSDPKAGVPVYKPKTYEVLVSDAANSL
        MAIMAFLSSP H PSLVR   + FL SP+ SSSFSALRR T SSL  AQT A+S FCFRIHC+DKERAAPVT+ SDPKAGVP+YKPKTYEVLVSDAANSL
Subjt:  MAIMAFLSSPLHSPSLVR---NKFLLSPLSSSSFSALRRCTPSSLSAAQTFASSRFCFRIHCTDKERAAPVTQRSDPKAGVPVYKPKTYEVLVSDAANSL

Query:  AYALEDGKIRVEIDFPTILLFLVRDTTHSDNLLLSIRGSSDEFIDANIQLALAVARNLQENRGTRSCIVFPDKPEKRRASQLFKTALDSIDGITVSSLDD
        AYALEDGK+R+EIDFP +            + + S +GSSDEFIDANIQLALAVARNLQE RGTRSCIVFPDKP+K RASQLFKTALDSIDGIT+SSLDD
Subjt:  AYALEDGKIRVEIDFPTILLFLVRDTTHSDNLLLSIRGSSDEFIDANIQLALAVARNLQENRGTRSCIVFPDKPEKRRASQLFKTALDSIDGITVSSLDD

Query:  VPAGPVTSFFRSVRNTLDFDFEDENAGDSFWDVQ-----------------------ETFASSTPTLLFNLELETLRADLGLLGFPPKDLHYRFLSQFIP
        VPAGPVTSFFRS+RNTLDFDFEDENAG   W                          ETFASS PTL+FNLELETLRADLGLLGFPPKDLHYRFLSQFIP
Subjt:  VPAGPVTSFFRSVRNTLDFDFEDENAGDSFWDVQ-----------------------ETFASSTPTLLFNLELETLRADLGLLGFPPKDLHYRFLSQFIP

Query:  VFYIRIREYSKWSTVSSIPWCVYYFIELPVREFCSLVFSMSLSVLNQFTAHLRPWQVMLKQADNSYACIAESETRFTLGETKDELLRVLGLQEEQGSSLE
        VFYIRIREYSK  TV   P+ V Y   L                   F  +  PWQVMLKQADNSYAC+AESETRFTLGETKDELLRVLGLQEEQGSSLE
Subjt:  VFYIRIREYSKWSTVSSIPWCVYYFIELPVREFCSLVFSMSLSVLNQFTAHLRPWQVMLKQADNSYACIAESETRFTLGETKDELLRVLGLQEEQGSSLE

Query:  FLRRGYKAATWWEEDVDSELSSAWRS
        FLRRGYKAATWWEED DSE+SSAWRS
Subjt:  FLRRGYKAATWWEEDVDSELSSAWRS

XP_022149990.1 protein LOW PSII ACCUMULATION 3, chloroplastic isoform X1 [Momordica charantia]

3.5e-171

80.05

Show/hide

Query:  MAIMAFLSSPLHSPSLVRNKFLLSPLSSSSFSALRRCTPSSLSAAQTFASSRFCFRIHCTDKERAAPVTQRSDPKAGVPVYKPKTYEVLVSDAANSLAYA
        MAIMAFLSSPLHSPSL+RNKFLLSPLSSSSFSALRRCTPSSLSAAQTFASSRFCFRIHCTDKERAAPVTQRSDPKAGVPVYKPKTYEVLVSDAANSLAYA
Subjt:  MAIMAFLSSPLHSPSLVRNKFLLSPLSSSSFSALRRCTPSSLSAAQTFASSRFCFRIHCTDKERAAPVTQRSDPKAGVPVYKPKTYEVLVSDAANSLAYA

Query:  LEDGKIRVEIDFPTILLFLVRDTTHSDNLLLSIRGSSDEFIDANIQLALAVARNLQENRGTRSCIVFPDKPEKRRASQLFKTALDSIDGITVSSLDDVPA
        LEDGKIRVEIDFP +            + + S +GSSDEFIDANIQLALAVARNLQENRGTRSCIVFPDKPEKRRASQLFKTALDSIDGITVSSLDDVPA
Subjt:  LEDGKIRVEIDFPTILLFLVRDTTHSDNLLLSIRGSSDEFIDANIQLALAVARNLQENRGTRSCIVFPDKPEKRRASQLFKTALDSIDGITVSSLDDVPA

Query:  GPVTSFFRSVRNTLDFDFEDENAG-------DSFW--------------DVQETFASSTPTLLFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIR
        GPVTSFFRSVRNTLDFDFEDENAG        S +                 ETFASSTPTLLFNLELETLRADLGLLGFPPKDLH+RFLSQFIPVFYIR
Subjt:  GPVTSFFRSVRNTLDFDFEDENAG-------DSFW--------------DVQETFASSTPTLLFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIR

Query:  IREYSKWSTVSSIPWCVYYFIELPVREFCSLVFSMSLSVLNQFTAHLRPWQVMLKQADNSYACIAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRG
        IREYSK  TV+  P+ V Y   L                   F  +  PWQVMLKQADNSYACIAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRG
Subjt:  IREYSKWSTVSSIPWCVYYFIELPVREFCSLVFSMSLSVLNQFTAHLRPWQVMLKQADNSYACIAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRG

Query:  YKAATWWEEDVDSELSSAWRS
        YKAATWWEEDVDSELSSAWRS
Subjt:  YKAATWWEEDVDSELSSAWRS

XP_022954402.1 protein LOW PSII ACCUMULATION 3, chloroplastic [Cucurbita moschata]

9.5e-153

72.3

Show/hide

Query:  MAIMAFLSSPLHSPSLVR---NKFLLSPLSSSSFSALRRCTPSSLSAAQTFASSRFCFRIHCTDKERAAPVTQRSDPKAGVPVYKPKTYEVLVSDAANSL
        MAIMAFLSSP H PSLVR   + FL SP+ +SSFSALRR T SSL  AQT A+S FCFRIHC+DKERAAPVT+ SDPKAGVP+YKPKTYEVLVSDAANSL
Subjt:  MAIMAFLSSPLHSPSLVR---NKFLLSPLSSSSFSALRRCTPSSLSAAQTFASSRFCFRIHCTDKERAAPVTQRSDPKAGVPVYKPKTYEVLVSDAANSL

Query:  AYALEDGKIRVEIDFPTILLFLVRDTTHSDNLLLSIRGSSDEFIDANIQLALAVARNLQENRGTRSCIVFPDKPEKRRASQLFKTALDSIDGITVSSLDD
        AYALEDGK+R+EIDFP +            + + S +GSSDEFIDANIQLALAVARNLQE RGTRSCIVFPDKP+K RASQLFKTALDSIDGIT+SSLDD
Subjt:  AYALEDGKIRVEIDFPTILLFLVRDTTHSDNLLLSIRGSSDEFIDANIQLALAVARNLQENRGTRSCIVFPDKPEKRRASQLFKTALDSIDGITVSSLDD

Query:  VPAGPVTSFFRSVRNTLDFDFEDENAGDSFWDVQ-----------------------ETFASSTPTLLFNLELETLRADLGLLGFPPKDLHYRFLSQFIP
        VPAGPVTSFFRS+RNTLDFDFEDENAG   W                          ETFASS PTL+FNLELETLRADLGLLGFPPKDLHYRFLSQFIP
Subjt:  VPAGPVTSFFRSVRNTLDFDFEDENAGDSFWDVQ-----------------------ETFASSTPTLLFNLELETLRADLGLLGFPPKDLHYRFLSQFIP

Query:  VFYIRIREYSKWSTVSSIPWCVYYFIELPVREFCSLVFSMSLSVLNQFTAHLRPWQVMLKQADNSYACIAESETRFTLGETKDELLRVLGLQEEQGSSLE
        VFYIRIREYSK  TV   P+ V Y   L                   F  +  PWQVMLKQADNSYAC+AESETRFTLGETKDELLRVLGLQEEQGSSLE
Subjt:  VFYIRIREYSKWSTVSSIPWCVYYFIELPVREFCSLVFSMSLSVLNQFTAHLRPWQVMLKQADNSYACIAESETRFTLGETKDELLRVLGLQEEQGSSLE

Query:  FLRRGYKAATWWEEDVDSELSSAWRS
        FLRRGYKAATWWEED DSE+SSAWRS
Subjt:  FLRRGYKAATWWEEDVDSELSSAWRS

XP_022992481.1 protein LOW PSII ACCUMULATION 3, chloroplastic [Cucurbita maxima]

1.6e-152

72.07

Show/hide

Query:  MAIMAFLSSPLHSPSLVR---NKFLLSPLSSSSFSALRRCTPSSLSAAQTFASSRFCFRIHCTDKERAAPVTQRSDPKAGVPVYKPKTYEVLVSDAANSL
        MAIMAFLSSP H PSLVR   + FL SP+ SSSFSALRR T SSL  AQT A+S FCFRIHC+DKERAAPVT+ SDPKAGVP+YKPKTYEVLVSDAANSL
Subjt:  MAIMAFLSSPLHSPSLVR---NKFLLSPLSSSSFSALRRCTPSSLSAAQTFASSRFCFRIHCTDKERAAPVTQRSDPKAGVPVYKPKTYEVLVSDAANSL

Query:  AYALEDGKIRVEIDFPTILLFLVRDTTHSDNLLLSIRGSSDEFIDANIQLALAVARNLQENRGTRSCIVFPDKPEKRRASQLFKTALDSIDGITVSSLDD
        AYALEDGK+R+EIDFP +            + + S +GSSDEFIDANIQLALAVARNLQE RGTRSCIVFPDKP+K RASQLFKTALDSIDGIT+SSLDD
Subjt:  AYALEDGKIRVEIDFPTILLFLVRDTTHSDNLLLSIRGSSDEFIDANIQLALAVARNLQENRGTRSCIVFPDKPEKRRASQLFKTALDSIDGITVSSLDD

Query:  VPAGPVTSFFRSVRNTLDFDFEDENAGDSFWDVQ-----------------------ETFASSTPTLLFNLELETLRADLGLLGFPPKDLHYRFLSQFIP
        +PAGPVTSFFRS+RNTLDFDFEDENAG   W                          ETFASS PTL+FNLELETLRADLGLLGFPPKDLHYRFLSQFIP
Subjt:  VPAGPVTSFFRSVRNTLDFDFEDENAGDSFWDVQ-----------------------ETFASSTPTLLFNLELETLRADLGLLGFPPKDLHYRFLSQFIP

Query:  VFYIRIREYSKWSTVSSIPWCVYYFIELPVREFCSLVFSMSLSVLNQFTAHLRPWQVMLKQADNSYACIAESETRFTLGETKDELLRVLGLQEEQGSSLE
        VFYIRIREYSK  TV   P+ V Y   L                   F  +  PWQVMLKQ DNSYAC+AESETRFTLGETKDELLRVLGLQEEQGSSLE
Subjt:  VFYIRIREYSKWSTVSSIPWCVYYFIELPVREFCSLVFSMSLSVLNQFTAHLRPWQVMLKQADNSYACIAESETRFTLGETKDELLRVLGLQEEQGSSLE

Query:  FLRRGYKAATWWEEDVDSELSSAWRS
        FLRRGYKAATWWEED DSE+SSAWRS
Subjt:  FLRRGYKAATWWEEDVDSELSSAWRS

XP_038900014.1 protein LOW PSII ACCUMULATION 3, chloroplastic [Benincasa hispida]

2.8e-152

72.54

Show/hide

Query:  MAIMAFLSSPLHSPSLVR---NKFLLSPLSSSSFSALRRCTPSSLSAAQTFASSRFCFRIHCTDKERAAPVTQRSDPKAGVPVYKPKTYEVLVSDAANSL
        MAIMAF+SSP   PSL R   + FL SP+ SSSF ALRR T SSL  AQT A+S FCFRIHC DKER +PVTQ SDPKAGVP+YKPKTYEVLVSDAANSL
Subjt:  MAIMAFLSSPLHSPSLVR---NKFLLSPLSSSSFSALRRCTPSSLSAAQTFASSRFCFRIHCTDKERAAPVTQRSDPKAGVPVYKPKTYEVLVSDAANSL

Query:  AYALEDGKIRVEIDFPTILLFLVRDTTHSDNLLLSIRGSSDEFIDANIQLALAVARNLQENRGTRSCIVFPDKPEKRRASQLFKTALDSIDGITVSSLDD
        AYALEDGKIR+EIDFP +            + + S +GSSDEFIDANIQLALAVARNLQE RGTRSCIVFPDKPEKRRASQLFKTALDSIDGITVSSLDD
Subjt:  AYALEDGKIRVEIDFPTILLFLVRDTTHSDNLLLSIRGSSDEFIDANIQLALAVARNLQENRGTRSCIVFPDKPEKRRASQLFKTALDSIDGITVSSLDD

Query:  VPAGPVTSFFRSVRNTLDFDFEDENAGDSFWDVQ-----------------------ETFASSTPTLLFNLELETLRADLGLLGFPPKDLHYRFLSQFIP
        VPAGPVTSFFRSVRNTLDFDFEDEN+G   W                          ETFASS PTLLFNLELETLRADLGLLGFPPKDLHYRFLSQFIP
Subjt:  VPAGPVTSFFRSVRNTLDFDFEDENAGDSFWDVQ-----------------------ETFASSTPTLLFNLELETLRADLGLLGFPPKDLHYRFLSQFIP

Query:  VFYIRIREYSKWSTVSSIPWCVYYFIELPVREFCSLVFSMSLSVLNQFTAHLRPWQVMLKQADNSYACIAESETRFTLGETKDELLRVLGLQEEQGSSLE
        VFYIRIREYSK  TV+  P+ V Y   L                   F  +  PWQVMLKQ+DNSYAC+AESETRFTLGETKDELLRVLGLQEEQGSSLE
Subjt:  VFYIRIREYSKWSTVSSIPWCVYYFIELPVREFCSLVFSMSLSVLNQFTAHLRPWQVMLKQADNSYACIAESETRFTLGETKDELLRVLGLQEEQGSSLE

Query:  FLRRGYKAATWWEEDVDSELSSAWRS
        FLRRGYKAATWWEEDVDSE+SSAWRS
Subjt:  FLRRGYKAATWWEEDVDSELSSAWRS

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CFB8 protein LOW PSII ACCUMULATION 3, chloroplastic

3.9e-152

71.83

Show/hide

Query:  MAIMAFLSSPLHSPSLVR---NKFLLSPLSSSSFSALRRCTPSSLSAAQTFASSRFCFRIHCTDKERAAPVTQRSDPKAGVPVYKPKTYEVLVSDAANSL
        M IMAF+SSP + PSL R   + FL SP+SSS    LRR TPSSL  AQT A+S FCFRIHC DKERAAPVTQ SDPKAGVP+YKPKTYEVLVSDAANSL
Subjt:  MAIMAFLSSPLHSPSLVR---NKFLLSPLSSSSFSALRRCTPSSLSAAQTFASSRFCFRIHCTDKERAAPVTQRSDPKAGVPVYKPKTYEVLVSDAANSL

Query:  AYALEDGKIRVEIDFPTILLFLVRDTTHSDNLLLSIRGSSDEFIDANIQLALAVARNLQENRGTRSCIVFPDKPEKRRASQLFKTALDSIDGITVSSLDD
        AYALEDGK+R+EIDFP +            + + S +GSSDEFIDANIQLALAVARNLQE RGTRSCIVFPDKPEKRRAS+LFKTA+DSIDGITVSSLDD
Subjt:  AYALEDGKIRVEIDFPTILLFLVRDTTHSDNLLLSIRGSSDEFIDANIQLALAVARNLQENRGTRSCIVFPDKPEKRRASQLFKTALDSIDGITVSSLDD

Query:  VPAGPVTSFFRSVRNTLDFDFEDENAGDSFWDVQ-----------------------ETFASSTPTLLFNLELETLRADLGLLGFPPKDLHYRFLSQFIP
        VPAGPVTSFFRSVRNTLDFDFED+NAG   W                          ETFASS PTLLFNLELETLRADLGLLGFPPKDLHYRFLSQFIP
Subjt:  VPAGPVTSFFRSVRNTLDFDFEDENAGDSFWDVQ-----------------------ETFASSTPTLLFNLELETLRADLGLLGFPPKDLHYRFLSQFIP

Query:  VFYIRIREYSKWSTVSSIPWCVYYFIELPVREFCSLVFSMSLSVLNQFTAHLRPWQVMLKQADNSYACIAESETRFTLGETKDELLRVLGLQEEQGSSLE
        VFYIRIREYSK  TV+  P+ V Y   L                   F  +  PWQVMLKQ+DNSYAC+AESETRFTLGETKDELLRVLGLQEEQGSSLE
Subjt:  VFYIRIREYSKWSTVSSIPWCVYYFIELPVREFCSLVFSMSLSVLNQFTAHLRPWQVMLKQADNSYACIAESETRFTLGETKDELLRVLGLQEEQGSSLE

Query:  FLRRGYKAATWWEEDVDSELSSAWRS
        FLRRGYKAATWWEEDVDSE+SSAWRS
Subjt:  FLRRGYKAATWWEEDVDSELSSAWRS

A0A5A7UU42 Protein LOW PSII ACCUMULATION 3

2.3e-152

72.07

Show/hide

Query:  MAIMAFLSSPLHSPSLVR---NKFLLSPLSSSSFSALRRCTPSSLSAAQTFASSRFCFRIHCTDKERAAPVTQRSDPKAGVPVYKPKTYEVLVSDAANSL
        M IMAFLSSP + PSL R   + FL SP+SSS    LRR TPSSL  AQT A+S FCFRIHC DKERAAPVTQ SDPKAGVP+YKPKTYEVLVSDAANSL
Subjt:  MAIMAFLSSPLHSPSLVR---NKFLLSPLSSSSFSALRRCTPSSLSAAQTFASSRFCFRIHCTDKERAAPVTQRSDPKAGVPVYKPKTYEVLVSDAANSL

Query:  AYALEDGKIRVEIDFPTILLFLVRDTTHSDNLLLSIRGSSDEFIDANIQLALAVARNLQENRGTRSCIVFPDKPEKRRASQLFKTALDSIDGITVSSLDD
        AYALEDGK+R+EIDFP +            + + S +GSSDEFIDANIQLALAVARNLQE RGTRSCIVFPDKPEKRRAS+LFKTA+DSIDGITVSSLDD
Subjt:  AYALEDGKIRVEIDFPTILLFLVRDTTHSDNLLLSIRGSSDEFIDANIQLALAVARNLQENRGTRSCIVFPDKPEKRRASQLFKTALDSIDGITVSSLDD

Query:  VPAGPVTSFFRSVRNTLDFDFEDENAGDSFWDVQ-----------------------ETFASSTPTLLFNLELETLRADLGLLGFPPKDLHYRFLSQFIP
        VPAGPVTSFFRSVRNTLDFDFED+NAG   W                          ETFASS PTLLFNLELETLRADLGLLGFPPKDLHYRFLSQFIP
Subjt:  VPAGPVTSFFRSVRNTLDFDFEDENAGDSFWDVQ-----------------------ETFASSTPTLLFNLELETLRADLGLLGFPPKDLHYRFLSQFIP

Query:  VFYIRIREYSKWSTVSSIPWCVYYFIELPVREFCSLVFSMSLSVLNQFTAHLRPWQVMLKQADNSYACIAESETRFTLGETKDELLRVLGLQEEQGSSLE
        VFYIRIREYSK  TV+  P+ V Y   L                   F  +  PWQVMLKQ+DNSYAC+AESETRFTLGETKDELLRVLGLQEEQGSSLE
Subjt:  VFYIRIREYSKWSTVSSIPWCVYYFIELPVREFCSLVFSMSLSVLNQFTAHLRPWQVMLKQADNSYACIAESETRFTLGETKDELLRVLGLQEEQGSSLE

Query:  FLRRGYKAATWWEEDVDSELSSAWRS
        FLRRGYKAATWWEEDVDSE+SSAWRS
Subjt:  FLRRGYKAATWWEEDVDSELSSAWRS

A0A6J1D790 protein LOW PSII ACCUMULATION 3, chloroplastic isoform X1

1.7e-171

80.05

Show/hide

Query:  MAIMAFLSSPLHSPSLVRNKFLLSPLSSSSFSALRRCTPSSLSAAQTFASSRFCFRIHCTDKERAAPVTQRSDPKAGVPVYKPKTYEVLVSDAANSLAYA
        MAIMAFLSSPLHSPSL+RNKFLLSPLSSSSFSALRRCTPSSLSAAQTFASSRFCFRIHCTDKERAAPVTQRSDPKAGVPVYKPKTYEVLVSDAANSLAYA
Subjt:  MAIMAFLSSPLHSPSLVRNKFLLSPLSSSSFSALRRCTPSSLSAAQTFASSRFCFRIHCTDKERAAPVTQRSDPKAGVPVYKPKTYEVLVSDAANSLAYA

Query:  LEDGKIRVEIDFPTILLFLVRDTTHSDNLLLSIRGSSDEFIDANIQLALAVARNLQENRGTRSCIVFPDKPEKRRASQLFKTALDSIDGITVSSLDDVPA
        LEDGKIRVEIDFP +            + + S +GSSDEFIDANIQLALAVARNLQENRGTRSCIVFPDKPEKRRASQLFKTALDSIDGITVSSLDDVPA
Subjt:  LEDGKIRVEIDFPTILLFLVRDTTHSDNLLLSIRGSSDEFIDANIQLALAVARNLQENRGTRSCIVFPDKPEKRRASQLFKTALDSIDGITVSSLDDVPA

Query:  GPVTSFFRSVRNTLDFDFEDENAG-------DSFW--------------DVQETFASSTPTLLFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIR
        GPVTSFFRSVRNTLDFDFEDENAG        S +                 ETFASSTPTLLFNLELETLRADLGLLGFPPKDLH+RFLSQFIPVFYIR
Subjt:  GPVTSFFRSVRNTLDFDFEDENAG-------DSFW--------------DVQETFASSTPTLLFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIR

Query:  IREYSKWSTVSSIPWCVYYFIELPVREFCSLVFSMSLSVLNQFTAHLRPWQVMLKQADNSYACIAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRG
        IREYSK  TV+  P+ V Y   L                   F  +  PWQVMLKQADNSYACIAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRG
Subjt:  IREYSKWSTVSSIPWCVYYFIELPVREFCSLVFSMSLSVLNQFTAHLRPWQVMLKQADNSYACIAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRG

Query:  YKAATWWEEDVDSELSSAWRS
        YKAATWWEEDVDSELSSAWRS
Subjt:  YKAATWWEEDVDSELSSAWRS

A0A6J1GQW6 protein LOW PSII ACCUMULATION 3, chloroplastic

4.6e-153

72.3

Show/hide

Query:  MAIMAFLSSPLHSPSLVR---NKFLLSPLSSSSFSALRRCTPSSLSAAQTFASSRFCFRIHCTDKERAAPVTQRSDPKAGVPVYKPKTYEVLVSDAANSL
        MAIMAFLSSP H PSLVR   + FL SP+ +SSFSALRR T SSL  AQT A+S FCFRIHC+DKERAAPVT+ SDPKAGVP+YKPKTYEVLVSDAANSL
Subjt:  MAIMAFLSSPLHSPSLVR---NKFLLSPLSSSSFSALRRCTPSSLSAAQTFASSRFCFRIHCTDKERAAPVTQRSDPKAGVPVYKPKTYEVLVSDAANSL

Query:  AYALEDGKIRVEIDFPTILLFLVRDTTHSDNLLLSIRGSSDEFIDANIQLALAVARNLQENRGTRSCIVFPDKPEKRRASQLFKTALDSIDGITVSSLDD
        AYALEDGK+R+EIDFP +            + + S +GSSDEFIDANIQLALAVARNLQE RGTRSCIVFPDKP+K RASQLFKTALDSIDGIT+SSLDD
Subjt:  AYALEDGKIRVEIDFPTILLFLVRDTTHSDNLLLSIRGSSDEFIDANIQLALAVARNLQENRGTRSCIVFPDKPEKRRASQLFKTALDSIDGITVSSLDD

Query:  VPAGPVTSFFRSVRNTLDFDFEDENAGDSFWDVQ-----------------------ETFASSTPTLLFNLELETLRADLGLLGFPPKDLHYRFLSQFIP
        VPAGPVTSFFRS+RNTLDFDFEDENAG   W                          ETFASS PTL+FNLELETLRADLGLLGFPPKDLHYRFLSQFIP
Subjt:  VPAGPVTSFFRSVRNTLDFDFEDENAGDSFWDVQ-----------------------ETFASSTPTLLFNLELETLRADLGLLGFPPKDLHYRFLSQFIP

Query:  VFYIRIREYSKWSTVSSIPWCVYYFIELPVREFCSLVFSMSLSVLNQFTAHLRPWQVMLKQADNSYACIAESETRFTLGETKDELLRVLGLQEEQGSSLE
        VFYIRIREYSK  TV   P+ V Y   L                   F  +  PWQVMLKQADNSYAC+AESETRFTLGETKDELLRVLGLQEEQGSSLE
Subjt:  VFYIRIREYSKWSTVSSIPWCVYYFIELPVREFCSLVFSMSLSVLNQFTAHLRPWQVMLKQADNSYACIAESETRFTLGETKDELLRVLGLQEEQGSSLE

Query:  FLRRGYKAATWWEEDVDSELSSAWRS
        FLRRGYKAATWWEED DSE+SSAWRS
Subjt:  FLRRGYKAATWWEEDVDSELSSAWRS

A0A6J1JTN7 protein LOW PSII ACCUMULATION 3, chloroplastic

7.9e-153

72.07

Show/hide

Query:  MAIMAFLSSPLHSPSLVR---NKFLLSPLSSSSFSALRRCTPSSLSAAQTFASSRFCFRIHCTDKERAAPVTQRSDPKAGVPVYKPKTYEVLVSDAANSL
        MAIMAFLSSP H PSLVR   + FL SP+ SSSFSALRR T SSL  AQT A+S FCFRIHC+DKERAAPVT+ SDPKAGVP+YKPKTYEVLVSDAANSL
Subjt:  MAIMAFLSSPLHSPSLVR---NKFLLSPLSSSSFSALRRCTPSSLSAAQTFASSRFCFRIHCTDKERAAPVTQRSDPKAGVPVYKPKTYEVLVSDAANSL

Query:  AYALEDGKIRVEIDFPTILLFLVRDTTHSDNLLLSIRGSSDEFIDANIQLALAVARNLQENRGTRSCIVFPDKPEKRRASQLFKTALDSIDGITVSSLDD
        AYALEDGK+R+EIDFP +            + + S +GSSDEFIDANIQLALAVARNLQE RGTRSCIVFPDKP+K RASQLFKTALDSIDGIT+SSLDD
Subjt:  AYALEDGKIRVEIDFPTILLFLVRDTTHSDNLLLSIRGSSDEFIDANIQLALAVARNLQENRGTRSCIVFPDKPEKRRASQLFKTALDSIDGITVSSLDD

Query:  VPAGPVTSFFRSVRNTLDFDFEDENAGDSFWDVQ-----------------------ETFASSTPTLLFNLELETLRADLGLLGFPPKDLHYRFLSQFIP
        +PAGPVTSFFRS+RNTLDFDFEDENAG   W                          ETFASS PTL+FNLELETLRADLGLLGFPPKDLHYRFLSQFIP
Subjt:  VPAGPVTSFFRSVRNTLDFDFEDENAGDSFWDVQ-----------------------ETFASSTPTLLFNLELETLRADLGLLGFPPKDLHYRFLSQFIP

Query:  VFYIRIREYSKWSTVSSIPWCVYYFIELPVREFCSLVFSMSLSVLNQFTAHLRPWQVMLKQADNSYACIAESETRFTLGETKDELLRVLGLQEEQGSSLE
        VFYIRIREYSK  TV   P+ V Y   L                   F  +  PWQVMLKQ DNSYAC+AESETRFTLGETKDELLRVLGLQEEQGSSLE
Subjt:  VFYIRIREYSKWSTVSSIPWCVYYFIELPVREFCSLVFSMSLSVLNQFTAHLRPWQVMLKQADNSYACIAESETRFTLGETKDELLRVLGLQEEQGSSLE

Query:  FLRRGYKAATWWEEDVDSELSSAWRS
        FLRRGYKAATWWEED DSE+SSAWRS
Subjt:  FLRRGYKAATWWEEDVDSELSSAWRS

SwissProt top hits

e value

%identity

Alignment

Q8H0W0 Protein LPA3

3.6e-110

60.56

Show/hide

Query:  TQRSDPKAGVPVYKPKTYEVLVSDAANSLAYALEDGKIRVEIDFPTILLFLVRDTTHSDNLLLSIRGSSDEFIDANIQLALAVARNLQENRGTRSCIVFP
        +  SDP+ GVP+YKPK+YEVL +DAANSLA+AL+D K R+EIDFP +            + + S +GSSD+FIDANIQLA+ V R LQE   TR+CIVFP
Subjt:  TQRSDPKAGVPVYKPKTYEVLVSDAANSLAYALEDGKIRVEIDFPTILLFLVRDTTHSDNLLLSIRGSSDEFIDANIQLALAVARNLQENRGTRSCIVFP

Query:  DKPEKRRASQLFKTALDSIDGITVSSLDDVPAGPVTSFFRSVRNTLDFDFEDENAGDSFWDVQ-----------------------ETFASSTPTLLFNL
        DKPEKRRASQ FK A DS+DGI++ SLDD+P   VT+FFRS+R+TLDFDFEDEN G   W+ +                       ETFASSTP LLFNL
Subjt:  DKPEKRRASQLFKTALDSIDGITVSSLDDVPAGPVTSFFRSVRNTLDFDFEDENAGDSFWDVQ-----------------------ETFASSTPTLLFNL

Query:  ELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKWSTVSSIPWCVYYFIELPVREFCSLVFSMSLSVLNQFTAHLRPWQVMLKQADNSYACIAE
        EL+TLRADLGLLGFPPKDLHYRFLSQFIPVFYIR REYSK  TV+  P+ + Y   L                   F  +  PWQVMLKQ D S+AC+AE
Subjt:  ELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKWSTVSSIPWCVYYFIELPVREFCSLVFSMSLSVLNQFTAHLRPWQVMLKQADNSYACIAE

Query:  SETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDVDSELSSAWRS
        S TRFTLGETK+ELL+VLGLQEE+GSSLEFLRRGYK+ATWWEEDV+ E SS WR+
Subjt:  SETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDVDSELSSAWRS

Arabidopsis top hits

e value

%identity

Alignment

AT1G73060.1 Low PSII Accumulation 3

2.5e-111

60.56

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Query:  TQRSDPKAGVPVYKPKTYEVLVSDAANSLAYALEDGKIRVEIDFPTILLFLVRDTTHSDNLLLSIRGSSDEFIDANIQLALAVARNLQENRGTRSCIVFP
        +  SDP+ GVP+YKPK+YEVL +DAANSLA+AL+D K R+EIDFP +            + + S +GSSD+FIDANIQLA+ V R LQE   TR+CIVFP
Subjt:  TQRSDPKAGVPVYKPKTYEVLVSDAANSLAYALEDGKIRVEIDFPTILLFLVRDTTHSDNLLLSIRGSSDEFIDANIQLALAVARNLQENRGTRSCIVFP

Query:  DKPEKRRASQLFKTALDSIDGITVSSLDDVPAGPVTSFFRSVRNTLDFDFEDENAGDSFWDVQ-----------------------ETFASSTPTLLFNL
        DKPEKRRASQ FK A DS+DGI++ SLDD+P   VT+FFRS+R+TLDFDFEDEN G   W+ +                       ETFASSTP LLFNL
Subjt:  DKPEKRRASQLFKTALDSIDGITVSSLDDVPAGPVTSFFRSVRNTLDFDFEDENAGDSFWDVQ-----------------------ETFASSTPTLLFNL

Query:  ELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKWSTVSSIPWCVYYFIELPVREFCSLVFSMSLSVLNQFTAHLRPWQVMLKQADNSYACIAE
        EL+TLRADLGLLGFPPKDLHYRFLSQFIPVFYIR REYSK  TV+  P+ + Y   L                   F  +  PWQVMLKQ D S+AC+AE
Subjt:  ELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKWSTVSSIPWCVYYFIELPVREFCSLVFSMSLSVLNQFTAHLRPWQVMLKQADNSYACIAE

Query:  SETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDVDSELSSAWRS
        S TRFTLGETK+ELL+VLGLQEE+GSSLEFLRRGYK+ATWWEEDV+ E SS WR+
Subjt:  SETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDVDSELSSAWRS

Sequences

Show/hide sequences

CDS sequence

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ATGGCGATCATGGCGTTTCTCTCCTCACCACTGCACAGTCCCTCTCTAGTCCGAAACAAATTTCTCCTCTCTCCACTTTCTTCTTCTTCCTTCAGTGCTCTACGGCGTTG
TACTCCATCCAGTTTATCTGCCGCTCAAACTTTCGCGAGTTCGAGATTTTGCTTTAGGATACACTGCACTGATAAAGAACGAGCTGCACCGGTTACTCAGCGTTCCGATC
CTAAGGCCGGAGTCCCGGTTTATAAGCCCAAAACCTACGAGGTTCTCGTCTCCGATGCCGCGAATTCTCTTGCCTATGCTCTGGAAGATGGAAAGATCCGCGTGGAGATT
GATTTTCCCACTATCTTGCTCTTTCTTGTGAGAGATACCACTCATTCCGACAATCTTTTACTTAGCATTAGGGGATCTTCAGATGAGTTCATCGATGCCAATATTCAACT
TGCCCTGGCTGTTGCAAGGAATCTTCAAGAAAATAGAGGAACTAGATCTTGCATTGTGTTTCCAGATAAGCCAGAGAAGCGTAGAGCTTCACAGCTATTCAAAACAGCTC
TTGACTCGATTGATGGAATAACTGTAAGTTCCCTGGATGATGTGCCTGCTGGACCTGTCACATCCTTCTTTAGATCTGTTAGAAACACCCTTGATTTTGATTTTGAAGAT
GAGAATGCAGGTGACTCATTTTGGGATGTGCAGGAAACTTTTGCTTCGTCAACACCCACCCTGCTGTTTAATCTAGAACTTGAAACCTTGCGTGCAGACTTGGGCTTACT
GGGATTCCCTCCCAAAGATTTGCACTATCGATTCCTCTCTCAGTTCATCCCAGTGTTCTATATTCGAATCAGAGAGTACTCTAAGTGGAGCACTGTTTCGTCTATACCCT
GGTGCGTATACTATTTTATCGAACTGCCTGTTAGAGAATTTTGTTCTTTGGTTTTCTCGATGTCTTTATCGGTCCTAAATCAGTTCACTGCACACTTAAGGCCTTGGCAA
GTGATGCTAAAACAAGCAGATAATTCTTATGCTTGCATTGCAGAGAGTGAGACAAGGTTCACCCTTGGTGAAACAAAAGATGAGCTATTAAGGGTCCTTGGACTACAGGA
GGAACAAGGAAGCTCATTAGAATTTCTCCGCAGAGGCTACAAGGCTGCCACTTGGTGGGAAGAAGATGTTGACTCTGAACTATCTTCGGCATGGCGTAGTTGA

mRNA sequence

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Protein sequence

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MAIMAFLSSPLHSPSLVRNKFLLSPLSSSSFSALRRCTPSSLSAAQTFASSRFCFRIHCTDKERAAPVTQRSDPKAGVPVYKPKTYEVLVSDAANSLAYALEDGKIRVEI
DFPTILLFLVRDTTHSDNLLLSIRGSSDEFIDANIQLALAVARNLQENRGTRSCIVFPDKPEKRRASQLFKTALDSIDGITVSSLDDVPAGPVTSFFRSVRNTLDFDFED
ENAGDSFWDVQETFASSTPTLLFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKWSTVSSIPWCVYYFIELPVREFCSLVFSMSLSVLNQFTAHLRPWQ
VMLKQADNSYACIAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDVDSELSSAWRS

MS025747 (gene) of Bitter gourd (TR) v1 genome