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MS025768 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS025768
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold813:1302331..1302726
RNA-Seq ExpressionMS025768
SyntenyMS025768
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PHT50853.1 hypothetical protein CQW23_10600 [Capsicum baccatum]2.4e-0434.07Show/hide
Query:  RSRIGVLLQDNRFGIVAAMVDVHPGRSPYLTEIYAIREGLRLALRLGLK--WVESDSLNAINMIHQDTEWQDEAANWIADIRTLSKSFSRF
        R+ +G LL+D+    + A V   P    +L E+ AI  GL LAL +G+K  WVESDS++A+  I+++     +AA+ +  I  +   F ++
Subjt:  RSRIGVLLQDNRFGIVAAMVDVHPGRSPYLTEIYAIREGLRLALRLGLK--WVESDSLNAINMIHQDTEWQDEAANWIADIRTLSKSFSRF
PHU20525.1 hypothetical protein BC332_11676 [Capsicum chinense]2.4e-0434.07Show/hide
Query:  RSRIGVLLQDNRFGIVAAMVDVHPGRSPYLTEIYAIREGLRLALRLGLK--WVESDSLNAINMIHQDTEWQDEAANWIADIRTLSKSFSRF
        R+ +G LL+D+    + A V   P    +L E+ AI  GL LAL +G+K  WVESDS++A+  I+++     +AA+ +  I  +   F ++
Subjt:  RSRIGVLLQDNRFGIVAAMVDVHPGRSPYLTEIYAIREGLRLALRLGLK--WVESDSLNAINMIHQDTEWQDEAANWIADIRTLSKSFSRF
XP_016554975.1 PREDICTED: uncharacterized protein LOC107854479 [Capsicum annuum]2.4e-0434.07Show/hide
Query:  RSRIGVLLQDNRFGIVAAMVDVHPGRSPYLTEIYAIREGLRLALRLGLK--WVESDSLNAINMIHQDTEWQDEAANWIADIRTLSKSFSRF
        R+ +G LL+D+    + A V   P    +L E+ AI  GL LAL +G+K  WVESDS++A+  I+++     +AA+ +  I  +   F ++
Subjt:  RSRIGVLLQDNRFGIVAAMVDVHPGRSPYLTEIYAIREGLRLALRLGLK--WVESDSLNAINMIHQDTEWQDEAANWIADIRTLSKSFSRF
XP_022155289.1 uncharacterized protein LOC111022426 [Momordica charantia]3.3e-0961.9Show/hide
Query:  SRIGVLLQDNRFGIVAAMVDVHPGRSPYLTEIYAIREGLRLALRLGLK--WVESDSLNAINMI
        S +GVLL+D    IVAAM+D H  ++P LTEI AIREGLRLA RLG+    VESDSL A+N+I
Subjt:  SRIGVLLQDNRFGIVAAMVDVHPGRSPYLTEIYAIREGLRLALRLGLK--WVESDSLNAINMI
XP_022158489.1 uncharacterized protein LOC111024968 [Momordica charantia]1.8e-1248.28Show/hide
Query:  SRIGVLLQDNRFGIVAAMVDVHPGRSPYLTEIYAIREGLRLALRLGLK--WVESDSLNAINMIHQDTEWQDEAANWIADIRTLSKSF
        S +GVLL++    IV AMVD H  ++P L +I AIREGL LA RLG+    VE+DSL A+N+I   + W+ EA +W+ DIR  ++ F
Subjt:  SRIGVLLQDNRFGIVAAMVDVHPGRSPYLTEIYAIREGLRLALRLGLK--WVESDSLNAINMIHQDTEWQDEAANWIADIRTLSKSF
TrEMBL top hitse value%identityAlignment
A0A2G2X055 RNase H domain-containing protein1.2e-0434.07Show/hide
Query:  RSRIGVLLQDNRFGIVAAMVDVHPGRSPYLTEIYAIREGLRLALRLGLK--WVESDSLNAINMIHQDTEWQDEAANWIADIRTLSKSFSRF
        R+ +G LL+D+    + A V   P    +L E+ AI  GL LAL +G+K  WVESDS++A+  I+++     +AA+ +  I  +   F ++
Subjt:  RSRIGVLLQDNRFGIVAAMVDVHPGRSPYLTEIYAIREGLRLALRLGLK--WVESDSLNAINMIHQDTEWQDEAANWIADIRTLSKSFSRF
A0A2G2ZQH7 uncharacterized protein LOC1078544791.2e-0434.07Show/hide
Query:  RSRIGVLLQDNRFGIVAAMVDVHPGRSPYLTEIYAIREGLRLALRLGLK--WVESDSLNAINMIHQDTEWQDEAANWIADIRTLSKSFSRF
        R+ +G LL+D+    + A V   P    +L E+ AI  GL LAL +G+K  WVESDS++A+  I+++     +AA+ +  I  +   F ++
Subjt:  RSRIGVLLQDNRFGIVAAMVDVHPGRSPYLTEIYAIREGLRLALRLGLK--WVESDSLNAINMIHQDTEWQDEAANWIADIRTLSKSFSRF
A0A2G3CP79 RNase H domain-containing protein1.2e-0434.07Show/hide
Query:  RSRIGVLLQDNRFGIVAAMVDVHPGRSPYLTEIYAIREGLRLALRLGLK--WVESDSLNAINMIHQDTEWQDEAANWIADIRTLSKSFSRF
        R+ +G LL+D+    + A V   P    +L E+ AI  GL LAL +G+K  WVESDS++A+  I+++     +AA+ +  I  +   F ++
Subjt:  RSRIGVLLQDNRFGIVAAMVDVHPGRSPYLTEIYAIREGLRLALRLGLK--WVESDSLNAINMIHQDTEWQDEAANWIADIRTLSKSFSRF
A0A6J1DPU1 uncharacterized protein LOC1110224261.6e-0961.9Show/hide
Query:  SRIGVLLQDNRFGIVAAMVDVHPGRSPYLTEIYAIREGLRLALRLGLK--WVESDSLNAINMI
        S +GVLL+D    IVAAM+D H  ++P LTEI AIREGLRLA RLG+    VESDSL A+N+I
Subjt:  SRIGVLLQDNRFGIVAAMVDVHPGRSPYLTEIYAIREGLRLALRLGLK--WVESDSLNAINMI
A0A6J1DZK3 uncharacterized protein LOC1110249688.9e-1348.28Show/hide
Query:  SRIGVLLQDNRFGIVAAMVDVHPGRSPYLTEIYAIREGLRLALRLGLK--WVESDSLNAINMIHQDTEWQDEAANWIADIRTLSKSF
        S +GVLL++    IV AMVD H  ++P L +I AIREGL LA RLG+    VE+DSL A+N+I   + W+ EA +W+ DIR  ++ F
Subjt:  SRIGVLLQDNRFGIVAAMVDVHPGRSPYLTEIYAIREGLRLALRLGLK--WVESDSLNAINMIHQDTEWQDEAANWIADIRTLSKSF
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTCTGGTCTAGGCAGAAGAATTCGAGAAATCAGAGCGGCACTTTACTTCGAAGGAATGCATGACTTCCTAAATTGCAGATCTCGCATAGGAGTTTTGCTACAAGA
CAACAGATTTGGCATCGTAGCTGCAATGGTGGATGTGCATCCAGGGAGAAGCCCTTATCTGACTGAAATTTATGCGATTCGAGAAGGACTGAGGCTCGCACTGCGATTAG
GGCTGAAATGGGTTGAGTCTGATTCGTTGAATGCCATCAACATGATCCACCAAGATACAGAATGGCAGGATGAGGCCGCCAATTGGATTGCTGATATTCGAACCCTCTCG
AAGTCTTTCTCTCGGTTTCTTTCCATCATGAGTATATGGAATCGAATTCAGCAGCTTATTCTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATTCTGGTCTAGGCAGAAGAATTCGAGAAATCAGAGCGGCACTTTACTTCGAAGGAATGCATGACTTCCTAAATTGCAGATCTCGCATAGGAGTTTTGCTACAAGA
CAACAGATTTGGCATCGTAGCTGCAATGGTGGATGTGCATCCAGGGAGAAGCCCTTATCTGACTGAAATTTATGCGATTCGAGAAGGACTGAGGCTCGCACTGCGATTAG
GGCTGAAATGGGTTGAGTCTGATTCGTTGAATGCCATCAACATGATCCACCAAGATACAGAATGGCAGGATGAGGCCGCCAATTGGATTGCTGATATTCGAACCCTCTCG
AAGTCTTTCTCTCGGTTTCTTTCCATCATGAGTATATGGAATCGAATTCAGCAGCTTATTCTCTAG
Protein sequenceShow/hide protein sequence
MDSGLGRRIREIRAALYFEGMHDFLNCRSRIGVLLQDNRFGIVAAMVDVHPGRSPYLTEIYAIREGLRLALRLGLKWVESDSLNAINMIHQDTEWQDEAANWIADIRTLS
KSFSRFLSIMSIWNRIQQLIL