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MS025793 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS025793
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold813:2794519..2795206
RNA-Seq ExpressionMS025793
SyntenyMS025793
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAA7051324.1 unnamed protein product [Microthlaspi erraticum]2.9e-0443.66Show/hide
Query:  STDDLACGNPGLASVDSLIWDLNGNWITDFMHKLGHLTLVLAQLWGV-SSAWSLLGIRVTGINWEVDSRVV
        +TD  + GNPGLAS   ++ D NG WI  F  KLG  +  LA+LWG+    W+    RV  +  EVDS +V
Subjt:  STDDLACGNPGLASVDSLIWDLNGNWITDFMHKLGHLTLVLAQLWGV-SSAWSLLGIRVTGINWEVDSRVV

KAG7535824.1 Reverse transcriptase domain [Arabidopsis thaliana x Arabidopsis arenosa]2.9e-0437.35Show/hide
Query:  YYGSSTDDLACGNPGLASVDSLIWDLNGNWITDFMHKLGHLTLVLAQLW----GVSSAWSLLGIRVTGINWEVDSRVVCDTLT
        ++  +TD  + GNPGLA+   ++ D  GNW + F   +G  +  LA+LW    G+  AW     RVT +  EVDS +V   LT
Subjt:  YYGSSTDDLACGNPGLASVDSLIWDLNGNWITDFMHKLGHLTLVLAQLW----GVSSAWSLLGIRVTGINWEVDSRVVCDTLT

PKI40609.1 hypothetical protein CRG98_039019 [Punica granatum]6.8e-0647.37Show/hide
Query:  DDLACGNPGLASVDSLIWDLNGNWITDFMHKLGHLTLVLAQLWGVSS----AWSLLGIRVTGINWEVDSRVVCDTL
        D  + GNPGLA    LI DL G+WI  FMH +G  + ++A+LWGV S    AWSL   R+     EVDS  V D L
Subjt:  DDLACGNPGLASVDSLIWDLNGNWITDFMHKLGHLTLVLAQLWGVSS----AWSLLGIRVTGINWEVDSRVVCDTL

XP_015936169.1 uncharacterized protein LOC107462117 [Arachis duranensis]4.4e-0540Show/hide
Query:  PPNYYGSSTDDLACGNPGLASVDSLIWDLNGNWITDFMHKLGHLTLVLAQLWGV----SSAWSLLGIRVTGINWEVDSRVVCDTL
        P ++   +TD  A GNPG+A    LI +  G WI  F+  +G+ T   A+LWGV     +AW  LG+R   I  EVDS+ V D +
Subjt:  PPNYYGSSTDDLACGNPGLASVDSLIWDLNGNWITDFMHKLGHLTLVLAQLWGV----SSAWSLLGIRVTGINWEVDSRVVCDTL

XP_031372737.1 12-oxophytodienoate reductase 3-like [Punica granatum]2.9e-0440.51Show/hide
Query:  STDDLACGNPGLASVDSLIWDLNGNWITDFMHKLGHLTLVLAQLWGV----SSAWSLLGIRVTGINWEVDSRVVCDTLT
        +TD+ + GNPG+A  D LI D +  W+T F  K+G  T V+A+LWGV       W  LG R   +  E+DS +V D ++
Subjt:  STDDLACGNPGLASVDSLIWDLNGNWITDFMHKLGHLTLVLAQLWGV----SSAWSLLGIRVTGINWEVDSRVVCDTLT

TrEMBL top hitse value%identityAlignment
A0A2I0I9D3 RNase H domain-containing protein3.3e-0647.37Show/hide
Query:  DDLACGNPGLASVDSLIWDLNGNWITDFMHKLGHLTLVLAQLWGVSS----AWSLLGIRVTGINWEVDSRVVCDTL
        D  + GNPGLA    LI DL G+WI  FMH +G  + ++A+LWGV S    AWSL   R+     EVDS  V D L
Subjt:  DDLACGNPGLASVDSLIWDLNGNWITDFMHKLGHLTLVLAQLWGVSS----AWSLLGIRVTGINWEVDSRVVCDTL

A0A2N9EDH2 RNase H domain-containing protein4.3e-0638.55Show/hide
Query:  LPPNYYGSSTDDLACGNPGLASVDSLIWDLNGNWITDFMHKLGHLTLVLAQLWGVSSAWSL-LGIRVTGINWEVDSRVVCDTL
        LPP +   ++D  A GNPGLA+   L+ D N NWI  F  K+G  T + A+LWG+     L L +    I  +VD+  V D +
Subjt:  LPPNYYGSSTDDLACGNPGLASVDSLIWDLNGNWITDFMHKLGHLTLVLAQLWGVSSAWSL-LGIRVTGINWEVDSRVVCDTL

A0A2N9EFE1 Uncharacterized protein1.6e-0535.63Show/hide
Query:  PPNYYGSSTDDLACGNPGLASVDSLIWDLNGNWITDFMHKLGHLTLVLAQLWGVSSAWSLL-GIRVTGINWEVDSRVVCDTLTKHSH
        P  +   +TD  A GNPGLASV  LI D NGNW+  F   +G      A+LWG+     L   + +  +  EVD++ V D +   ++
Subjt:  PPNYYGSSTDDLACGNPGLASVDSLIWDLNGNWITDFMHKLGHLTLVLAQLWGVSSAWSLL-GIRVTGINWEVDSRVVCDTLTKHSH

A0A2N9ERE1 Peptidylprolyl isomerase2.5e-0637.8Show/hide
Query:  PPNYYGSSTDDLACGNPGLASVDSLIWDLNGNWITDFMHKLGHLTLVLAQLWGVSSAWSLL-GIRVTGINWEVDSRVVCDTL
        PP +   +TD    GNPG AS   ++ D NGNWI  F HKLG    ++A+LWG+     L   + +  +  E+D++ V D L
Subjt:  PPNYYGSSTDDLACGNPGLASVDSLIWDLNGNWITDFMHKLGHLTLVLAQLWGVSSAWSLL-GIRVTGINWEVDSRVVCDTL

A0A2N9FCY8 RNase H domain-containing protein1.3e-0536.59Show/hide
Query:  PPNYYGSSTDDLACGNPGLASVDSLIWDLNGNWITDFMHKLGHLTLVLAQLWGVSSAWSLL-GIRVTGINWEVDSRVVCDTL
        P ++   +TD    GNPGLAS   ++ D NGNW+  F HKLG    ++A+LWGV     L   + +  +  E D++ + D L
Subjt:  PPNYYGSSTDDLACGNPGLASVDSLIWDLNGNWITDFMHKLGHLTLVLAQLWGVSSAWSLL-GIRVTGINWEVDSRVVCDTL

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657503.0e-0436.49Show/hide
Query:  STDDLACGNPGLASVDSLIWDLNGNWITDFMHKLGHLTLVLAQLWGV----SSAWSLLGIRVTGINWEVDSRVV
        +TD  + GNPGLAS   ++ D  G W   F   +G  +   A+LWGV      AW     +V  +  EVDS V+
Subjt:  STDDLACGNPGLASVDSLIWDLNGNWITDFMHKLGHLTLVLAQLWGV----SSAWSLLGIRVTGINWEVDSRVV

Arabidopsis top hitse value%identityAlignment
AT5G42905.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein8.0e-0535.14Show/hide
Query:  STDDLACGNPGLASVDSLIWDLNGNWITDFMHKLGHLTLVLAQLWGV----SSAWSLLGIRVTGINWEVDSRVV
        +TD  + GNPGLAS   ++ D  G W   F   +G  +   A+LWGV      AW     +V  +  EVDS  +
Subjt:  STDDLACGNPGLASVDSLIWDLNGNWITDFMHKLGHLTLVLAQLWGV----SSAWSLLGIRVTGINWEVDSRVV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCACTAGCTTTTTGCTGCCCCTTCATCTTTCTCATTTAGCATGGTTTGAGAGCCAATTTGTTGATCTGATGCATAACCTCCTTCAAGAGAAGCAAAGCAGAGATGC
TCATGGAACATATCCGAAGTTGGCAGCCTTCTGGAGGAAGGAAAAGAATTTTCATATCTGCAGGTTTCAACTTTCAACAAACAAACGATTGCCGCCGAACTACTATGGAA
GCTCAACTGACGACTTGGCATGTGGAAATCCTGGATTGGCAAGTGTTGACAGTCTCATTTGGGACTTGAACGGAAATTGGATAACTGATTTCATGCATAAACTTGGTCAT
TTGACTTTGGTTCTAGCACAATTGTGGGGTGTTTCTTCGGCATGGAGCTTGCTTGGAATTCGGGTTACAGGAATTAATTGGGAGGTAGACTCTCGGGTGGTTTGTGATAC
CTTGACTAAGCATTCGCATTATGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCACTAGCTTTTTGCTGCCCCTTCATCTTTCTCATTTAGCATGGTTTGAGAGCCAATTTGTTGATCTGATGCATAACCTCCTTCAAGAGAAGCAAAGCAGAGATGC
TCATGGAACATATCCGAAGTTGGCAGCCTTCTGGAGGAAGGAAAAGAATTTTCATATCTGCAGGTTTCAACTTTCAACAAACAAACGATTGCCGCCGAACTACTATGGAA
GCTCAACTGACGACTTGGCATGTGGAAATCCTGGATTGGCAAGTGTTGACAGTCTCATTTGGGACTTGAACGGAAATTGGATAACTGATTTCATGCATAAACTTGGTCAT
TTGACTTTGGTTCTAGCACAATTGTGGGGTGTTTCTTCGGCATGGAGCTTGCTTGGAATTCGGGTTACAGGAATTAATTGGGAGGTAGACTCTCGGGTGGTTTGTGATAC
CTTGACTAAGCATTCGCATTATGCTTGA
Protein sequenceShow/hide protein sequence
MATSFLLPLHLSHLAWFESQFVDLMHNLLQEKQSRDAHGTYPKLAAFWRKEKNFHICRFQLSTNKRLPPNYYGSSTDDLACGNPGLASVDSLIWDLNGNWITDFMHKLGH
LTLVLAQLWGVSSAWSLLGIRVTGINWEVDSRVVCDTLTKHSHYA