; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS025806 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS025806
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionX-linked retinitis pigmentosa GTPase regulator
Genome locationscaffold411:185523..186430
RNA-Seq ExpressionMS025806
SyntenyMS025806
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4271654.1 unnamed protein product [Prunus armeniaca]2.3e-3648.02Show/hide
Query:  GTMTKMPSPAAAHRNVLKKTTRHDGEG-EAVNPNPEGLVDDEGRHFPARQEEAEHVGDPKSGEGKGAEERVGA---EDGAVAV---IVPDQKVGPIEVGG
        G + ++P  A  H N L++  RH   G + VN  P+  VD + ++ PAR+++ E V  PK  E    ++RV A    D  +A+   I P +KVG    G 
Subjt:  GTMTKMPSPAAAHRNVLKKTTRHDGEG-EAVNPNPEGLVDDEGRHFPARQEEAEHVGDPKSGEGKGAEERVGA---EDGAVAV---IVPDQKVGPIEVGG

Query:  KVVAEGRVENDEKVEEEDGDGSEEDEGESPDVGGGFVLGGDIDEEEEGDQEAGLEEAEGEGDVELTEGELVGDGDGGEERVEVAAAEEGEAEELIEGPEG
          + +G  E ++ +++  G+   EDEG+ P+  GG  L GD+DEEEEGDQE GLE+ +GE  ++  E  L+  G+GGEERVEV AAE G+ EEL+EGPE 
Subjt:  KVVAEGRVENDEKVEEEDGDGSEEDEGESPDVGGGFVLGGDIDEEEEGDQEAGLEEAEGEGDVELTEGELVGDGDGGEERVEVAAAEEGEAEELIEGPEG

Query:  DEGDEEESDGPEGVEAAEVVAGAGLEAEMEDEAEGEEGEEEEEGDEADGGEV
        DE DEEESDGPEGVE  E+  GAGLEAE+EDEAEGEEGE++E GDE  GG+V
Subjt:  DEGDEEESDGPEGVEAAEVVAGAGLEAEMEDEAEGEEGEEEEEGDEADGGEV

CAB4302092.1 unnamed protein product [Prunus armeniaca]1.7e-2852.58Show/hide
Query:  PKSGEGKGAEERVGA---EDGAVAV---IVPDQKVGPIEVGGKVVAEGRVENDEKVEEEDGDGSEEDEGESPDVGGGFVLGGDIDEEEEGDQEAGLEEAE
        PK  E    ++RV A    D  +A+   I P +KVG    G   + +G  E ++ +++  G+   EDEG+ P+  GG  L GD+DEEEEGDQE GLE+ +
Subjt:  PKSGEGKGAEERVGA---EDGAVAV---IVPDQKVGPIEVGGKVVAEGRVENDEKVEEEDGDGSEEDEGESPDVGGGFVLGGDIDEEEEGDQEAGLEEAE

Query:  GEGDVELTEGELVGDGDGGEERVEVAAAEEGEAEELIEGPEGDEGDEEESDGPEGVEAAEVVAGAGLEAEMEDEAEGEEGEEEEEGDEADGGEV
        GE  ++  E  L+  G+GGEERVEV AAE G+ EEL+EGPE DE DEEESDGPEGVE  E+  GAGLEAE+EDEAEGEEGE++E GDE  GG+V
Subjt:  GEGDVELTEGELVGDGDGGEERVEVAAAEEGEAEELIEGPEGDEGDEEESDGPEGVEAAEVVAGAGLEAEMEDEAEGEEGEEEEEGDEADGGEV

KAG6576629.1 hypothetical protein SDJN03_24203, partial [Cucurbita argyrosperma subsp. sororia]2.9e-3656.22Show/hide
Query:  PSPAAAHRNVLKKTTRHDGEGEAVNPNPEGLVDDEGRHFPARQEEAEHVGDPKSGEGKGAEERVGAEDGAVAVIVPDQKVGPIEVGGKVVAEGRVENDEK
        P    A +  L+     DGE E VN NPE LVDD G  FPAR++E EHV DP++ EG G +E VGA+DG +   V   ++  IE GG+ V EG V++DEK
Subjt:  PSPAAAHRNVLKKTTRHDGEGEAVNPNPEGLVDDEGRHFPARQEEAEHVGDPKSGEGKGAEERVGAEDGAVAVIVPDQKVGPIEVGGKVVAEGRVENDEK

Query:  VEEEDGDGSEEDEGESPDVGGGFVLGGDIDEEEEGDQEAGLEEAEGEGDVELTEGELVGDGDGGEERVEVAAAEEGEAEELIEGP
        VEEE+G G EE EG S  V  G VLGG IDE E+G+++ GLE+AEGE  +EL EG LV  G GGEE VE+AAAEEGEAEEL+EGP
Subjt:  VEEEDGDGSEEDEGESPDVGGGFVLGGDIDEEEEGDQEAGLEEAEGEGDVELTEGELVGDGDGGEERVEVAAAEEGEAEELIEGP

PQP95170.1 high mobility group nucleosome-binding domain-containing protein 5-like [Prunus yedoensis var. nudiflora]9.2e-3847.43Show/hide
Query:  GTMTKMPSPAAAHRNVLKKTTRHDGEGEAVNPNPEGLVDDEGRHFPARQEEAEHVGDPKSGEGKGAEERVGA---EDGAVAV---IVPDQKVGPIEVGGK
        G + ++P  A  H N L++       G+ VN +P+ LVD + ++ PAR+++ E V  PK  E  G ++RV A    D  +A+   I P +KVG    G  
Subjt:  GTMTKMPSPAAAHRNVLKKTTRHDGEGEAVNPNPEGLVDDEGRHFPARQEEAEHVGDPKSGEGKGAEERVGA---EDGAVAV---IVPDQKVGPIEVGGK

Query:  VVAEGRVENDEKVEEEDGDGSEEDEGESPDVGGGFVLGGDIDEEEEGDQEAGLEEAEGEGDVELTEGELVGDGDGGEERVEVAAAEEGEAEELIEGPEGD
         +  G  E ++ +++  G+   EDEG+ P   GG  L G +DEEEEGDQE GLE+++GE  ++  E  L+  G+GGEERVEV AAE G+AEEL+EGPE D
Subjt:  VVAEGRVENDEKVEEEDGDGSEEDEGESPDVGGGFVLGGDIDEEEEGDQEAGLEEAEGEGDVELTEGELVGDGDGGEERVEVAAAEEGEAEELIEGPEGD

Query:  EGDEEESDGPEGVEAAEVVAGAGLEAEMEDEAEGEEGEEEEEGDEADGGEVEG
        E DEEESDGPEGVE  E+  GAGLEAE+EDEA+G+EGE++E GD+  GG+VEG
Subjt:  EGDEEESDGPEGVEAAEVVAGAGLEAEMEDEAEGEEGEEEEEGDEADGGEVEG

XP_020413053.1 high mobility group nucleosome-binding domain-containing protein 5-like [Prunus persica]3.5e-3748.41Show/hide
Query:  GTMTKMPSPAAAHRNVLKKTTRHDGEG-EAVNPNPEGLVDDEGRHFPARQEEAEHVGDPKSGEGKGAEERVGA---EDGAVAV---IVPDQKVGPIEVGG
        G + ++P  A  H N L++  RH   G + VN  P+  VD + ++ PAR+++ E V  PK  E  G ++RV A    D  +A+   I P +KVG    G 
Subjt:  GTMTKMPSPAAAHRNVLKKTTRHDGEG-EAVNPNPEGLVDDEGRHFPARQEEAEHVGDPKSGEGKGAEERVGA---EDGAVAV---IVPDQKVGPIEVGG

Query:  KVVAEGRVENDEKVEEEDGDGSEEDEGESPDVGGGFVLGGDIDEEEEGDQEAGLEEAEGEGDVELTEGELVGDGDGGEERVEVAAAEEGEAEELIEGPEG
          + +G  E ++ +++  G+   EDEG  P+  GG  L GD+DEEEEGDQE GLE+ +GE  ++  E  L+  G+GGEERVEV AAE G+ EEL+EGPE 
Subjt:  KVVAEGRVENDEKVEEEDGDGSEEDEGESPDVGGGFVLGGDIDEEEEGDQEAGLEEAEGEGDVELTEGELVGDGDGGEERVEVAAAEEGEAEELIEGPEG

Query:  DEGDEEESDGPEGVEAAEVVAGAGLEAEMEDEAEGEEGEEEEEGDEADGGEV
        DE DEEESDGPEGVE  E+ +GAGLEAE+EDEAEGEEGE++E GDE  GG+V
Subjt:  DEGDEEESDGPEGVEAAEVVAGAGLEAEMEDEAEGEEGEEEEEGDEADGGEV

TrEMBL top hitse value%identityAlignment
A0A314XUC1 High mobility group nucleosome-binding domain-containing protein 5-like4.4e-3847.43Show/hide
Query:  GTMTKMPSPAAAHRNVLKKTTRHDGEGEAVNPNPEGLVDDEGRHFPARQEEAEHVGDPKSGEGKGAEERVGA---EDGAVAV---IVPDQKVGPIEVGGK
        G + ++P  A  H N L++       G+ VN +P+ LVD + ++ PAR+++ E V  PK  E  G ++RV A    D  +A+   I P +KVG    G  
Subjt:  GTMTKMPSPAAAHRNVLKKTTRHDGEGEAVNPNPEGLVDDEGRHFPARQEEAEHVGDPKSGEGKGAEERVGA---EDGAVAV---IVPDQKVGPIEVGGK

Query:  VVAEGRVENDEKVEEEDGDGSEEDEGESPDVGGGFVLGGDIDEEEEGDQEAGLEEAEGEGDVELTEGELVGDGDGGEERVEVAAAEEGEAEELIEGPEGD
         +  G  E ++ +++  G+   EDEG+ P   GG  L G +DEEEEGDQE GLE+++GE  ++  E  L+  G+GGEERVEV AAE G+AEEL+EGPE D
Subjt:  VVAEGRVENDEKVEEEDGDGSEEDEGESPDVGGGFVLGGDIDEEEEGDQEAGLEEAEGEGDVELTEGELVGDGDGGEERVEVAAAEEGEAEELIEGPEGD

Query:  EGDEEESDGPEGVEAAEVVAGAGLEAEMEDEAEGEEGEEEEEGDEADGGEVEG
        E DEEESDGPEGVE  E+  GAGLEAE+EDEA+G+EGE++E GD+  GG+VEG
Subjt:  EGDEEESDGPEGVEAAEVVAGAGLEAEMEDEAEGEEGEEEEEGDEADGGEVEG

A0A6J5U8G2 Uncharacterized protein1.1e-3648.02Show/hide
Query:  GTMTKMPSPAAAHRNVLKKTTRHDGEG-EAVNPNPEGLVDDEGRHFPARQEEAEHVGDPKSGEGKGAEERVGA---EDGAVAV---IVPDQKVGPIEVGG
        G + ++P  A  H N L++  RH   G + VN  P+  VD + ++ PAR+++ E V  PK  E    ++RV A    D  +A+   I P +KVG    G 
Subjt:  GTMTKMPSPAAAHRNVLKKTTRHDGEG-EAVNPNPEGLVDDEGRHFPARQEEAEHVGDPKSGEGKGAEERVGA---EDGAVAV---IVPDQKVGPIEVGG

Query:  KVVAEGRVENDEKVEEEDGDGSEEDEGESPDVGGGFVLGGDIDEEEEGDQEAGLEEAEGEGDVELTEGELVGDGDGGEERVEVAAAEEGEAEELIEGPEG
          + +G  E ++ +++  G+   EDEG+ P+  GG  L GD+DEEEEGDQE GLE+ +GE  ++  E  L+  G+GGEERVEV AAE G+ EEL+EGPE 
Subjt:  KVVAEGRVENDEKVEEEDGDGSEEDEGESPDVGGGFVLGGDIDEEEEGDQEAGLEEAEGEGDVELTEGELVGDGDGGEERVEVAAAEEGEAEELIEGPEG

Query:  DEGDEEESDGPEGVEAAEVVAGAGLEAEMEDEAEGEEGEEEEEGDEADGGEV
        DE DEEESDGPEGVE  E+  GAGLEAE+EDEAEGEEGE++E GDE  GG+V
Subjt:  DEGDEEESDGPEGVEAAEVVAGAGLEAEMEDEAEGEEGEEEEEGDEADGGEV

A0A6J5WQW0 Uncharacterized protein8.4e-2952.58Show/hide
Query:  PKSGEGKGAEERVGA---EDGAVAV---IVPDQKVGPIEVGGKVVAEGRVENDEKVEEEDGDGSEEDEGESPDVGGGFVLGGDIDEEEEGDQEAGLEEAE
        PK  E    ++RV A    D  +A+   I P +KVG    G   + +G  E ++ +++  G+   EDEG+ P+  GG  L GD+DEEEEGDQE GLE+ +
Subjt:  PKSGEGKGAEERVGA---EDGAVAV---IVPDQKVGPIEVGGKVVAEGRVENDEKVEEEDGDGSEEDEGESPDVGGGFVLGGDIDEEEEGDQEAGLEEAE

Query:  GEGDVELTEGELVGDGDGGEERVEVAAAEEGEAEELIEGPEGDEGDEEESDGPEGVEAAEVVAGAGLEAEMEDEAEGEEGEEEEEGDEADGGEV
        GE  ++  E  L+  G+GGEERVEV AAE G+ EEL+EGPE DE DEEESDGPEGVE  E+  GAGLEAE+EDEAEGEEGE++E GDE  GG+V
Subjt:  GEGDVELTEGELVGDGDGGEERVEVAAAEEGEAEELIEGPEGDEGDEEESDGPEGVEAAEVVAGAGLEAEMEDEAEGEEGEEEEEGDEADGGEV

Q56PC3 RPGR (Fragment)4.5e-0640.89Show/hide
Query:  EGEAVNPNPEGLVDDEGRHFPARQEEAEHVGDPKSGEGKGAEERVGAEDGAVAVIVPDQKVGPIEVG-GKVVAEGRVENDEKVEEEDGDGSEEDEGESPD
        EG+      EG  ++E       +EE E  G+ + GEGKG EE  G E+G       + + G  E G GK   EG  E + + EEE+G+G  E+EGE  +
Subjt:  EGEAVNPNPEGLVDDEGRHFPARQEEAEHVGDPKSGEGKGAEERVGAEDGAVAVIVPDQKVGPIEVG-GKVVAEGRVENDEKVEEEDGDGSEEDEGESPD

Query:  VGGGFVLGGDIDEEEEGDQEAGLEEAEGEGDVELTEGELVGDGDGGEERVEVAAAEEGEAEELIEGPEGDEGDEEESDGPEGVEAAEVVAGAGLEAEMED
               G +  EE EG++E   EE EGEG+ E  EGE  G+G+G EE  E    EE E EE  EG E  EG+EEE +  EG E  EV      E E E+
Subjt:  VGGGFVLGGDIDEEEEGDQEAGLEEAEGEGDVELTEGELVGDGDGGEERVEVAAAEEGEAEELIEGPEGDEGDEEESDGPEGVEAAEVVAGAGLEAEMED

Query:  EAEGEEGEEEEEGDEADGGEVEGSR
        E E EEGEEE E  E +G   E  R
Subjt:  EAEGEEGEEEEEGDEADGGEVEGSR

Q9GMD3 Retinitis pigmentosa GTPase regulator (Fragment)3.4e-0640.08Show/hide
Query:  DGEG-EAVNPNPEGLVDDEGRHFPARQEEAEHVGD-PKSGEGKGAEERVGAEDGAVAVIVPDQKVGPIEVGGKVVAEGRVENDEKVEEEDGDGSEEDE--
        +GEG EA     EG  ++EG      + E E  G+  ++GEGKG EE    E+G           G  +VGG+   +G  +  E+ EEE+GDG EE+E  
Subjt:  DGEG-EAVNPNPEGLVDDEGRHFPARQEEAEHVGD-PKSGEGKGAEERVGAEDGAVAVIVPDQKVGPIEVGGKVVAEGRVENDEKVEEEDGDGSEEDE--

Query:  GESPDVGGGFVLG-GDI----DEEEEGD-QEAGLEEAE---GEGDVELTEGELVGDGDG-GEERVEVAAAEEGEAEELIEGPEGDEGDEEESDGPEGVEA
        GE  +  GG V G G++    DEE+EGD +E G  E E   GEGD E  +GE   +GDG GEE  +    EEG+     EG E  +G+E+E +  E  E 
Subjt:  GESPDVGGGFVLG-GDI----DEEEEGD-QEAGLEEAE---GEGDVELTEGELVGDGDG-GEERVEVAAAEEGEAEELIEGPEGDEGDEEESDGPEGVEA

Query:  AEVVAGAGLEAEMEDEAEGE-EGEEEEEG---DEADGGEVEG
         E   G G E + E E EG+ EGEEE +G   +E DG E EG
Subjt:  AEVVAGAGLEAEMEDEAEGE-EGEEEEEG---DEADGGEVEG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTTCAATTGTTCCCCGGTACACTCCCAGCGGCATTCGACGCCGGCGGCCAAGGAATCGGTGATGGGAACAATGACCAAAATGCCCTCCCCGGCTGCGGCGCACAG
AAACGTACTGAAGAAGACAACAAGACATGATGGTGAAGGCGAGGCCGTAAACCCGAATCCTGAGGGACTTGTTGATGACGAGGGACGCCACTTTCCAGCAAGACAAGAGG
AAGCAGAGCATGTAGGAGACCCCAAATCCGGCGAAGGCAAGGGAGCTGAAGAGAGGGTAGGCGCAGAGGACGGTGCTGTTGCTGTAATCGTGCCTGATCAGAAGGTAGGT
CCGATTGAAGTAGGAGGGAAGGTGGTCGCGGAAGGGAGAGTAGAGAACGATGAGAAGGTGGAGGAAGAGGATGGGGATGGGAGTGAGGAGGACGAGGGCGAGAGCCCGGA
CGTCGGTGGAGGTTTTGTTCTTGGCGGAGACATTGATGAGGAAGAGGAGGGTGATCAGGAAGCCGGGCTGGAGGAAGCCGAGGGAGAGGGCGACGTGGAGCTTACAGAGG
GCGAATTGGTAGGGGATGGGGATGGGGGGGAAGAAAGGGTAGAGGTAGCGGCGGCGGAAGAGGGAGAGGCGGAGGAGCTCATTGAGGGCCCAGAAGGAGATGAAGGAGAC
GAGGAGGAATCGGACGGTCCAGAGGGAGTTGAAGCGGCGGAGGTGGTGGCAGGAGCGGGACTTGAAGCGGAGATGGAAGATGAAGCAGAGGGAGAGGAGGGAGAGGAGGA
GGAGGAGGGCGACGAAGCAGATGGTGGTGAGGTCGAAGGTAGCAGGATCCAGAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGATTTCAATTGTTCCCCGGTACACTCCCAGCGGCATTCGACGCCGGCGGCCAAGGAATCGGTGATGGGAACAATGACCAAAATGCCCTCCCCGGCTGCGGCGCACAG
AAACGTACTGAAGAAGACAACAAGACATGATGGTGAAGGCGAGGCCGTAAACCCGAATCCTGAGGGACTTGTTGATGACGAGGGACGCCACTTTCCAGCAAGACAAGAGG
AAGCAGAGCATGTAGGAGACCCCAAATCCGGCGAAGGCAAGGGAGCTGAAGAGAGGGTAGGCGCAGAGGACGGTGCTGTTGCTGTAATCGTGCCTGATCAGAAGGTAGGT
CCGATTGAAGTAGGAGGGAAGGTGGTCGCGGAAGGGAGAGTAGAGAACGATGAGAAGGTGGAGGAAGAGGATGGGGATGGGAGTGAGGAGGACGAGGGCGAGAGCCCGGA
CGTCGGTGGAGGTTTTGTTCTTGGCGGAGACATTGATGAGGAAGAGGAGGGTGATCAGGAAGCCGGGCTGGAGGAAGCCGAGGGAGAGGGCGACGTGGAGCTTACAGAGG
GCGAATTGGTAGGGGATGGGGATGGGGGGGAAGAAAGGGTAGAGGTAGCGGCGGCGGAAGAGGGAGAGGCGGAGGAGCTCATTGAGGGCCCAGAAGGAGATGAAGGAGAC
GAGGAGGAATCGGACGGTCCAGAGGGAGTTGAAGCGGCGGAGGTGGTGGCAGGAGCGGGACTTGAAGCGGAGATGGAAGATGAAGCAGAGGGAGAGGAGGGAGAGGAGGA
GGAGGAGGGCGACGAAGCAGATGGTGGTGAGGTCGAAGGTAGCAGGATCCAGAAATGA
Protein sequenceShow/hide protein sequence
MDFNCSPVHSQRHSTPAAKESVMGTMTKMPSPAAAHRNVLKKTTRHDGEGEAVNPNPEGLVDDEGRHFPARQEEAEHVGDPKSGEGKGAEERVGAEDGAVAVIVPDQKVG
PIEVGGKVVAEGRVENDEKVEEEDGDGSEEDEGESPDVGGGFVLGGDIDEEEEGDQEAGLEEAEGEGDVELTEGELVGDGDGGEERVEVAAAEEGEAEELIEGPEGDEGD
EEESDGPEGVEAAEVVAGAGLEAEMEDEAEGEEGEEEEEGDEADGGEVEGSRIQK