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MS025839 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS025839
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase
Genome locationscaffold173:148579..150065
RNA-Seq ExpressionMS025839
SyntenyMS025839
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_019150527.1 PREDICTED: uncharacterized protein LOC109147321 [Ipomoea nil]1.2e-0846.58Show/hide
Query:  EEFSEGEEGSFNSDDVQFTKDQWRSFRAPWRSSLIIKVLGRKFGYQFLLRRLLAIWRLKGEFKLISLSNDFFI
        E+ S+ E+       ++ TK++  + RAPWR +LIIKV+GRK GY +LLRRL ++WR KG   LI++ ND+F+
Subjt:  EEFSEGEEGSFNSDDVQFTKDQWRSFRAPWRSSLIIKVLGRKFGYQFLLRRLLAIWRLKGEFKLISLSNDFFI

XP_019182142.1 PREDICTED: uncharacterized protein LOC109177287 [Ipomoea nil]4.0e-0947.95Show/hide
Query:  EEFSEGEEGSFNSDDVQFTKDQWRSFRAPWRSSLIIKVLGRKFGYQFLLRRLLAIWRLKGEFKLISLSNDFFI
        +E S+ EE       ++ TK++  + RAPWR SLI+KV+GRK GY +LLRRL A+W+ KG   LI++ ND+F+
Subjt:  EEFSEGEEGSFNSDDVQFTKDQWRSFRAPWRSSLIIKVLGRKFGYQFLLRRLLAIWRLKGEFKLISLSNDFFI

XP_019183629.1 PREDICTED: uncharacterized protein LOC109178450 [Ipomoea nil]1.8e-0948.65Show/hide
Query:  EEEFSEGEEGSFNSDDVQFTKDQWRSFRAPWRSSLIIKVLGRKFGYQFLLRRLLAIWRLKGEFKLISLSNDFFI
        E+E S+GEE       ++ TK++  + RAPWR++LI+KV G+  GY  LLRRL A+WR KG F+L++L ND+F+
Subjt:  EEEFSEGEEGSFNSDDVQFTKDQWRSFRAPWRSSLIIKVLGRKFGYQFLLRRLLAIWRLKGEFKLISLSNDFFI

XP_019186575.1 PREDICTED: uncharacterized protein LOC109181278 [Ipomoea nil]3.1e-0945.98Show/hide
Query:  ELGASSETGMEE---EFSEGEEGSFNSDDVQFTKDQWRSFRAPWRSSLIIKVLGRKFGYQFLLRRLLAIWRLKGEFKLISLSNDFFI
        E G + E G EE   E S+ E+       ++ TK +  + RAPWR +LIIKV+GRK GY +LLRRL ++W+LKG   LI++ ND+F+
Subjt:  ELGASSETGMEE---EFSEGEEGSFNSDDVQFTKDQWRSFRAPWRSSLIIKVLGRKFGYQFLLRRLLAIWRLKGEFKLISLSNDFFI

XP_031120945.1 uncharacterized protein LOC116024185 [Ipomoea triloba]5.2e-0955.17Show/hide
Query:  VQFTKDQWRSFRAPWRSSLIIKVLGRKFGYQFLLRRLLAIWRLKGEFKLISLSNDFFI
        ++FT  +    RAPWR SLIIKV+GR+ GY +LLRRLL++W  KG  +LI+L ND+F+
Subjt:  VQFTKDQWRSFRAPWRSSLIIKVLGRKFGYQFLLRRLLAIWRLKGEFKLISLSNDFFI

TrEMBL top hitse value%identityAlignment
A0A1R3J823 Reverse transcriptase4.8e-0835.16Show/hide
Query:  EEEFSEGEEGSFNSDDVQFTKDQWRSFRAPWRSSLIIKVLGRKFGYQFLLRRLLAIWRLKGEFKLISLSNDFFISSEAYNSYGKENAERGP
        ++  S+ E+G+ +   V+FT D+ R  R PWR SLI+K+LG+  G++ L  ++  +W++KG++K+I L ND+F+    + S      + GP
Subjt:  EEEFSEGEEGSFNSDDVQFTKDQWRSFRAPWRSSLIIKVLGRKFGYQFLLRRLLAIWRLKGEFKLISLSNDFFISSEAYNSYGKENAERGP

A0A2I0HW72 DUF4283 domain-containing protein (Fragment)2.4e-0740.59Show/hide
Query:  MVMGESMGELGASSETGMEEEFSEGEEGSFNSDD----------VQFTKDQWRSFRAPWRSSLIIKVLGRKFGYQFLLRRLLAIWRLKGEFKLISLSNDF
        MV+G S   + A  +   E++  + +  S + +D            F K   R  RAPW  SLIIK+LGRK GY +L RRL+ +W+ KG+FKLISL +DF
Subjt:  MVMGESMGELGASSETGMEEEFSEGEEGSFNSDD----------VQFTKDQWRSFRAPWRSSLIIKVLGRKFGYQFLLRRLLAIWRLKGEFKLISLSNDF

Query:  F
        +
Subjt:  F

A0A2I0L4T4 uncharacterized protein LOC1161965465.3e-0741.77Show/hide
Query:  EEEFSEGEEGSFNSDD-----VQFTKDQWRSFRAPWRSSLIIKVLGRKFGYQFLLRRLLAIWRLKGEFKLISLSNDFFI
        E + S+ EE   N DD     ++FTK++ +SFRAPW  SL++KVLGR+ GY +L +RL ++WR +     +S  +D+F+
Subjt:  EEEFSEGEEGSFNSDD-----VQFTKDQWRSFRAPWRSSLIIKVLGRKFGYQFLLRRLLAIWRLKGEFKLISLSNDFFI

A0A2I0LF18 Uncharacterized protein (Fragment)4.0e-0746.84Show/hide
Query:  SETGMEEEFSEGEEGSFNSDDVQFTKDQWRSFRAPWRSSLIIKVLGRKFGYQFLLRRLLAIWRLKGEFKLISLSNDFFI
        SE   EEE  E + G     +++F+K+Q   FRAPW  SLI+K+LG++ GY++L +RL  +W  K  FKLISL +DFF+
Subjt:  SETGMEEEFSEGEEGSFNSDDVQFTKDQWRSFRAPWRSSLIIKVLGRKFGYQFLLRRLLAIWRLKGEFKLISLSNDFFI

A0A6N2LZK8 CCHC-type domain-containing protein5.3e-0734.69Show/hide
Query:  VMGESMGELGASSETGMEEEFSEGEEGSFNSDD---VQFTKDQWRSFRAPWRSSLIIKVLGRKFGYQFLLRRLLAIWRLKGEFKLISLSNDFFISSEA
        +MGES        +    +  SE E+   + DD   ++ + ++ +  RAPW+ +LIIK++GRK GY F ++RL  +W+L+G+F L  L N+F+++  A
Subjt:  VMGESMGELGASSETGMEEEFSEGEEGSFNSDD---VQFTKDQWRSFRAPWRSSLIIKVLGRKFGYQFLLRRLLAIWRLKGEFKLISLSNDFFISSEA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTATGGGTGAGTCGATGGGGGAATTGGGTGCTAGTTCTGAGACAGGAATGGAAGAGGAATTCAGCGAAGGAGAAGAGGGATCTTTTAATTCGGATGATGTTCAGTT
TACTAAAGATCAATGGAGGAGTTTTAGGGCACCATGGCGGTCGTCTCTAATCATCAAGGTCCTTGGGAGAAAGTTCGGTTACCAATTCCTTTTGCGCAGACTGTTAGCAA
TCTGGCGTCTGAAAGGGGAGTTTAAGCTAATAAGTCTGAGTAATGATTTCTTTATTAGCAGTGAGGCTTATAACTCATATGGGAAGGAGAATGCGGAAAGAGGACCAAAT
TTGCCACATGACCAGACGAATGGTAAAGGGAAAGTCAGTGATTTTATGAGATTTGGAAGTTCGAAAGGTAGCCAAGACTCAAACATATGGCAGAGCAGGAACAAAGGGAT
TTTTTTTGGAGGTAGAAATAGAGGTTTCGGGTCCCCGTTTGAGAACCCAGAGTTGCTGAAGTTCAATAATAATGGAGGCAGCCGAAATCCTCCATGGATGGTTGGAGATT
TAGATCCAGGAGAATCAAGCTCTGATGAGGGTAATCCCCAAGACCAAGTACATAATTTCAATTTCCGAACTAAGGTTAGCAAAGAGGATTATTCTAAGGGAGACTTTGTG
GACGAGGGACAATGTTCCTCGAAATCTCAGCTGAGGATTTTTATGGAAGATAGGGATGGATTGGAACTAATCAACCAAGAGTCAAACTTGGAAATGGAGCAGATGGACAA
CGAAATTGGCTCAACCATGGAGGAAGTGAGAGAGATTCCCACAGGAAAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTATGGGTGAGTCGATGGGGGAATTGGGTGCTAGTTCTGAGACAGGAATGGAAGAGGAATTCAGCGAAGGAGAAGAGGGATCTTTTAATTCGGATGATGTTCAGTT
TACTAAAGATCAATGGAGGAGTTTTAGGGCACCATGGCGGTCGTCTCTAATCATCAAGGTCCTTGGGAGAAAGTTCGGTTACCAATTCCTTTTGCGCAGACTGTTAGCAA
TCTGGCGTCTGAAAGGGGAGTTTAAGCTAATAAGTCTGAGTAATGATTTCTTTATTAGCAGTGAGGCTTATAACTCATATGGGAAGGAGAATGCGGAAAGAGGACCAAAT
TTGCCACATGACCAGACGAATGGTAAAGGGAAAGTCAGTGATTTTATGAGATTTGGAAGTTCGAAAGGTAGCCAAGACTCAAACATATGGCAGAGCAGGAACAAAGGGAT
TTTTTTTGGAGGTAGAAATAGAGGTTTCGGGTCCCCGTTTGAGAACCCAGAGTTGCTGAAGTTCAATAATAATGGAGGCAGCCGAAATCCTCCATGGATGGTTGGAGATT
TAGATCCAGGAGAATCAAGCTCTGATGAGGGTAATCCCCAAGACCAAGTACATAATTTCAATTTCCGAACTAAGGTTAGCAAAGAGGATTATTCTAAGGGAGACTTTGTG
GACGAGGGACAATGTTCCTCGAAATCTCAGCTGAGGATTTTTATGGAAGATAGGGATGGATTGGAACTAATCAACCAAGAGTCAAACTTGGAAATGGAGCAGATGGACAA
CGAAATTGGCTCAACCATGGAGGAAGTGAGAGAGATTCCCACAGGAAAGTAA
Protein sequenceShow/hide protein sequence
MVMGESMGELGASSETGMEEEFSEGEEGSFNSDDVQFTKDQWRSFRAPWRSSLIIKVLGRKFGYQFLLRRLLAIWRLKGEFKLISLSNDFFISSEAYNSYGKENAERGPN
LPHDQTNGKGKVSDFMRFGSSKGSQDSNIWQSRNKGIFFGGRNRGFGSPFENPELLKFNNNGGSRNPPWMVGDLDPGESSSDEGNPQDQVHNFNFRTKVSKEDYSKGDFV
DEGQCSSKSQLRIFMEDRDGLELINQESNLEMEQMDNEIGSTMEEVREIPTGK