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MS025862 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS025862
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRibonuclease H-like superfamily protein
Genome locationscaffold505:7632..8489
RNA-Seq ExpressionMS025862
SyntenyMS025862
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143317.1 uncharacterized protein LOC111013216 [Momordica charantia]3.6e-0928.28Show/hide
Query:  YFGSVRYTLSYRDYWDEILAISGSPGIIKAIILVWKIWGFRNVVVFGGEQLNQDRLRLLIEKQLNFQAQK-VPKRIIRQSSCNGQAISTDATRRFKLSEN
        ++G+VR   + +D W+ ++ +     +  ++++ W+IW  RN  +F GE +++ +L   I   +N    K       R+S  N   +         L   
Subjt:  YFGSVRYTLSYRDYWDEILAISGSPGIIKAIILVWKIWGFRNVVVFGGEQLNQDRLRLLIEKQLNFQAQK-VPKRIIRQSSCNGQAISTDATRRFKLSEN

Query:  WNPPPHNTWKMNTDASWFEDRQMGALAGL-----WEIQAAWCCKL
        W+ PP N WK+NTDASW E+R++G +  +      EI  A  CK+
Subjt:  WNPPPHNTWKMNTDASWFEDRQMGALAGL-----WEIQAAWCCKL
XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]3.5e-0427.72Show/hide
Query:  KAIILVWKIWGFRNVVVFGGEQLNQDRLRLLIEKQLNFQAQKVPKRIIRQSSCNGQAISTDATRRFKLSEN----WNPPPHNTWKMNTDASWFEDRQMGA
        +++I+ W+IW  RN  +F G       ++L+I++ +   A        R ++  G++ + D     ++ +N    W PP  N+WK+NTDA+W  D   G 
Subjt:  KAIILVWKIWGFRNVVVFGGEQLNQDRLRLLIEKQLNFQAQKVPKRIIRQSSCNGQAISTDATRRFKLSEN----WNPPPHNTWKMNTDASWFEDRQMGA

Query:  L
        +
Subjt:  L
TrEMBL top hitse value%identityAlignment
A0A6J1CQG0 uncharacterized protein LOC1110132161.7e-0928.28Show/hide
Query:  YFGSVRYTLSYRDYWDEILAISGSPGIIKAIILVWKIWGFRNVVVFGGEQLNQDRLRLLIEKQLNFQAQK-VPKRIIRQSSCNGQAISTDATRRFKLSEN
        ++G+VR   + +D W+ ++ +     +  ++++ W+IW  RN  +F GE +++ +L   I   +N    K       R+S  N   +         L   
Subjt:  YFGSVRYTLSYRDYWDEILAISGSPGIIKAIILVWKIWGFRNVVVFGGEQLNQDRLRLLIEKQLNFQAQK-VPKRIIRQSSCNGQAISTDATRRFKLSEN

Query:  WNPPPHNTWKMNTDASWFEDRQMGALAGL-----WEIQAAWCCKL
        W+ PP N WK+NTDASW E+R++G +  +      EI  A  CK+
Subjt:  WNPPPHNTWKMNTDASWFEDRQMGALAGL-----WEIQAAWCCKL
A0A6J1DSV1 uncharacterized protein LOC1110236081.7e-0427.72Show/hide
Query:  KAIILVWKIWGFRNVVVFGGEQLNQDRLRLLIEKQLNFQAQKVPKRIIRQSSCNGQAISTDATRRFKLSEN----WNPPPHNTWKMNTDASWFEDRQMGA
        +++I+ W+IW  RN  +F G       ++L+I++ +   A        R ++  G++ + D     ++ +N    W PP  N+WK+NTDA+W  D   G 
Subjt:  KAIILVWKIWGFRNVVVFGGEQLNQDRLRLLIEKQLNFQAQKVPKRIIRQSSCNGQAISTDATRRFKLSEN----WNPPPHNTWKMNTDASWFEDRQMGA

Query:  L
        +
Subjt:  L
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G29090.1 Ribonuclease H-like superfamily protein4.3e-0532.63Show/hide
Query:  LVWKIWGFRNVVVFGGEQLN-QDRLRL----LIEKQLNFQAQKV-PKRIIRQSSCNGQAISTDATRRFKLSENWNPPPHNTWKMNTDASWFEDRQ
        L+W++W  RN +VF G + N Q+ LR     L E ++  +A+    K  + +SSC                  W PPPH   K NTDA+W  D +
Subjt:  LVWKIWGFRNVVVFGGEQLN-QDRLRL----LIEKQLNFQAQKV-PKRIIRQSSCNGQAISTDATRRFKLSENWNPPPHNTWKMNTDASWFEDRQ

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCCAGAAGCAGACCTCATCTCTCAATTGTCGTTTCCACAATGGGATGCTAATGACAAAATTATTTGGGGTCCAGATAAGAAAGGAAGGAAGAGGAGACATCCGAA
CACCTATTTTGGGAGTGTAAGGTATACGCTATCTTATCGAGACTACTGGGATGAGATCCTAGCTATCAGTGGCAGCCCGGGCATCATAAAAGCTATAATCTTAGTCTGGA
AAATATGGGGATTTAGAAATGTGGTGGTGTTTGGAGGCGAACAACTAAATCAAGATCGACTTAGACTACTAATTGAAAAACAGCTCAACTTCCAAGCACAAAAGGTTCCA
AAGAGGATTATCAGACAGAGTTCTTGCAACGGCCAAGCTATTTCTACAGATGCAACCAGAAGATTCAAGCTTTCAGAAAATTGGAACCCACCACCACACAATACCTGGAA
AATGAACACGGATGCTTCCTGGTTCGAGGACAGACAAATGGGGGCGCTGGCTGGGTTGTGGGAAATTCAAGCGGCATGGTGTTGCAAGCTGGAAATTGCTGCATCAAAGA
TAAAAGAAGTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGCCAGAAGCAGACCTCATCTCTCAATTGTCGTTTCCACAATGGGATGCTAATGACAAAATTATTTGGGGTCCAGATAAGAAAGGAAGGAAGAGGAGACATCCGAA
CACCTATTTTGGGAGTGTAAGGTATACGCTATCTTATCGAGACTACTGGGATGAGATCCTAGCTATCAGTGGCAGCCCGGGCATCATAAAAGCTATAATCTTAGTCTGGA
AAATATGGGGATTTAGAAATGTGGTGGTGTTTGGAGGCGAACAACTAAATCAAGATCGACTTAGACTACTAATTGAAAAACAGCTCAACTTCCAAGCACAAAAGGTTCCA
AAGAGGATTATCAGACAGAGTTCTTGCAACGGCCAAGCTATTTCTACAGATGCAACCAGAAGATTCAAGCTTTCAGAAAATTGGAACCCACCACCACACAATACCTGGAA
AATGAACACGGATGCTTCCTGGTTCGAGGACAGACAAATGGGGGCGCTGGCTGGGTTGTGGGAAATTCAAGCGGCATGGTGTTGCAAGCTGGAAATTGCTGCATCAAAGA
TAAAAGAAGTGTAA
Protein sequenceShow/hide protein sequence
MEPEADLISQLSFPQWDANDKIIWGPDKKGRKRRHPNTYFGSVRYTLSYRDYWDEILAISGSPGIIKAIILVWKIWGFRNVVVFGGEQLNQDRLRLLIEKQLNFQAQKVP
KRIIRQSSCNGQAISTDATRRFKLSENWNPPPHNTWKMNTDASWFEDRQMGALAGLWEIQAAWCCKLEIAASKIKEV