CuGenDBv2

Gene ID	MS025886
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Complex1_LYR domain-containing protein
Genome location	scaffold779:183945..184625
RNA-Seq Expression	MS025886
Synteny	MS025886
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022134018.1 uncharacterized protein LOC111006395 [Momordica charantia]

4.9e-51

99.09

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Query:  MSSEALQVARVYRELLKAVKNHIGKEESKKHFVDYVAQKFRERSGLSEPHSLQQKIKLARDYALLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASV
        MSSEALQVARVYRELLKAVKNHIGKEESKKHFVDYVAQKFRERSGLSEPHSLQQKIKLA DYALLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASV
Subjt:  MSSEALQVARVYRELLKAVKNHIGKEESKKHFVDYVAQKFRERSGLSEPHSLQQKIKLARDYALLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASV

Query:  GLRLPEAYQP
        GLRLPEAYQP
Subjt:  GLRLPEAYQP

XP_022933120.1 uncharacterized protein LOC111439884 [Cucurbita moschata]

2.4e-45

87.27

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Query:  MSSEALQVARVYRELLKAVKNHIGKEESKKHFVDYVAQKFRERSGLSEPHSLQQKIKLARDYALLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASV
        M+SEALQVA+VYR+LLKAVK HIGKEE+KKHFVDYVAQKFRE+S LS+PHS+QQKIKLARDY  LLNSVHHQKDLLFSYNIAIDRS+EMKRILGKSAASV
Subjt:  MSSEALQVARVYRELLKAVKNHIGKEESKKHFVDYVAQKFRERSGLSEPHSLQQKIKLARDYALLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASV

Query:  GLRLPEAYQP
        GL+LPE YQP
Subjt:  GLRLPEAYQP

XP_022967927.1 uncharacterized protein LOC111467294 [Cucurbita maxima]

4.8e-46

88.18

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Query:  MSSEALQVARVYRELLKAVKNHIGKEESKKHFVDYVAQKFRERSGLSEPHSLQQKIKLARDYALLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASV
        M+SEALQVA+VYR+LLKAVKNHIGKEE+KKHFVDYVAQKFRE+S LS+PHS+QQKIKLARDY  LLNSVHHQKDLLFSYNIAIDRS+EMKRILGKSAASV
Subjt:  MSSEALQVARVYRELLKAVKNHIGKEESKKHFVDYVAQKFRERSGLSEPHSLQQKIKLARDYALLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASV

Query:  GLRLPEAYQP
        GL+LPE YQP
Subjt:  GLRLPEAYQP

XP_023544932.1 uncharacterized protein LOC111804382 [Cucurbita pepo subsp. pepo]

1.5e-44

85.45

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Query:  MSSEALQVARVYRELLKAVKNHIGKEESKKHFVDYVAQKFRERSGLSEPHSLQQKIKLARDYALLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASV
        M+SEA QVA+VYR+LLKAVKNHIGKEE+KKHFVDYVAQKFRE S +S+PHS+QQKIKLARDY  LLNSVHHQKDLLFSYNIA+DRS+EMKRILGKSAASV
Subjt:  MSSEALQVARVYRELLKAVKNHIGKEESKKHFVDYVAQKFRERSGLSEPHSLQQKIKLARDYALLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASV

Query:  GLRLPEAYQP
        GL+LPE YQP
Subjt:  GLRLPEAYQP

XP_038889144.1 uncharacterized protein LOC120079034 [Benincasa hispida]

2.6e-44

85.45

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Query:  MSSEALQVARVYRELLKAVKNHIGKEESKKHFVDYVAQKFRERSGLSEPHSLQQKIKLARDYALLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASV
        M+SEALQVA+VYR+LLKAVKNHIGKEESKKHFVDYVAQKFR+++ LS+PHS+QQ+IKLA DY  LLNSVHHQKDLLFSYNIA+DRSEEMKRILGKSAASV
Subjt:  MSSEALQVARVYRELLKAVKNHIGKEESKKHFVDYVAQKFRERSGLSEPHSLQQKIKLARDYALLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASV

Query:  GLRLPEAYQP
        GL+LPE YQP
Subjt:  GLRLPEAYQP

TrEMBL top hits

e value

%identity

Alignment

A0A067DNY7 Uncharacterized protein

8.0e-39

75.45

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Query:  MSSEALQVARVYRELLKAVKNHIGKEESKKHFVDYVAQKFRERSGLSEPHSLQQKIKLARDYALLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASV
        MSSE +Q A+VYR+LLKAVKNHIGKE+ K HF++YV Q+FR+ S LS+P S++QKIKLA DY  LLNSVHH KDLLFSYNIA+DRS+EMKRILGKSAASV
Subjt:  MSSEALQVARVYRELLKAVKNHIGKEESKKHFVDYVAQKFRERSGLSEPHSLQQKIKLARDYALLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASV

Query:  GLRLPEAYQP
        GL+LPE YQP
Subjt:  GLRLPEAYQP

A0A0A0L9E2 Uncharacterized protein

2.2e-44

83.64

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Query:  MSSEALQVARVYRELLKAVKNHIGKEESKKHFVDYVAQKFRERSGLSEPHSLQQKIKLARDYALLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASV
        M+SEALQVA+VYR+LLKAVK H+GKEESKKHFVDYVAQKFR++S LS+PHS+QQ+IKLARDY  LLNSVHHQKDLLFSYNIA+DRS+EMKR+LGKSAASV
Subjt:  MSSEALQVARVYRELLKAVKNHIGKEESKKHFVDYVAQKFRERSGLSEPHSLQQKIKLARDYALLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASV

Query:  GLRLPEAYQP
        GL LPE YQP
Subjt:  GLRLPEAYQP

A0A6J1C0V5 uncharacterized protein LOC111006395

2.4e-51

99.09

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Query:  MSSEALQVARVYRELLKAVKNHIGKEESKKHFVDYVAQKFRERSGLSEPHSLQQKIKLARDYALLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASV
        MSSEALQVARVYRELLKAVKNHIGKEESKKHFVDYVAQKFRERSGLSEPHSLQQKIKLA DYALLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASV
Subjt:  MSSEALQVARVYRELLKAVKNHIGKEESKKHFVDYVAQKFRERSGLSEPHSLQQKIKLARDYALLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASV

Query:  GLRLPEAYQP
        GLRLPEAYQP
Subjt:  GLRLPEAYQP

A0A6J1EY92 uncharacterized protein LOC111439884

1.1e-45

87.27

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Query:  MSSEALQVARVYRELLKAVKNHIGKEESKKHFVDYVAQKFRERSGLSEPHSLQQKIKLARDYALLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASV
        M+SEALQVA+VYR+LLKAVK HIGKEE+KKHFVDYVAQKFRE+S LS+PHS+QQKIKLARDY  LLNSVHHQKDLLFSYNIAIDRS+EMKRILGKSAASV
Subjt:  MSSEALQVARVYRELLKAVKNHIGKEESKKHFVDYVAQKFRERSGLSEPHSLQQKIKLARDYALLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASV

Query:  GLRLPEAYQP
        GL+LPE YQP
Subjt:  GLRLPEAYQP

A0A6J1HS51 uncharacterized protein LOC111467294

2.3e-46

88.18

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Query:  MSSEALQVARVYRELLKAVKNHIGKEESKKHFVDYVAQKFRERSGLSEPHSLQQKIKLARDYALLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASV
        M+SEALQVA+VYR+LLKAVKNHIGKEE+KKHFVDYVAQKFRE+S LS+PHS+QQKIKLARDY  LLNSVHHQKDLLFSYNIAIDRS+EMKRILGKSAASV
Subjt:  MSSEALQVARVYRELLKAVKNHIGKEESKKHFVDYVAQKFRERSGLSEPHSLQQKIKLARDYALLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASV

Query:  GLRLPEAYQP
        GL+LPE YQP
Subjt:  GLRLPEAYQP

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G51960.1 CONTAINS InterPro DOMAIN/s: Complex 1 LYR protein (InterPro:IPR008011); Has 45 Blast hits to 45 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

1.9e-32

61.82

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Query:  MSSEALQVARVYRELLKAVKNHIGKEESKKHFVDYVAQKFRERSGLSEPHSLQQKIKLARDYALLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASV
        MS E +  ARVYR+LLKAV  H+GKE+ K HF+D+V Q+FR+ +         +KI LAR+Y  LLNS+H  KDLLFSYNIA+DR+EEMKR+L KSAASV
Subjt:  MSSEALQVARVYRELLKAVKNHIGKEESKKHFVDYVAQKFRERSGLSEPHSLQQKIKLARDYALLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASV

Query:  GLRLPEAYQP
        GLRLPE Y+P
Subjt:  GLRLPEAYQP

Sequences

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CDS sequence

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ATGAGTTCAGAAGCCCTGCAGGTAGCTCGGGTCTACCGGGAGCTTCTCAAAGCTGTGAAGAACCATATTGGAAAGGAAGAGAGCAAGAAGCATTTTGTGGACTATGTGGC
CCAAAAGTTCAGGGAGAGAAGCGGGCTTTCCGAACCCCATTCTCTACAACAGAAAATTAAGCTTGCGCGCGATTACGCATTGCTACTTAACAGTGTGCACCATCAAAAGG
ATTTGCTGTTCTCTTACAACATTGCTATTGATAGATCAGAGGAAATGAAGAGAATATTAGGCAAGTCTGCGGCAAGCGTGGGGCTTAGACTTCCTGAAGCTTATCAACCC
TGA

mRNA sequence

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Protein sequence

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MSSEALQVARVYRELLKAVKNHIGKEESKKHFVDYVAQKFRERSGLSEPHSLQQKIKLARDYALLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASVGLRLPEAYQP

MS025886 (gene) of Bitter gourd (TR) v1 genome