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MS025922 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS025922
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Genome locationscaffold878:123062..123620
RNA-Seq ExpressionMS025922
SyntenyMS025922
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
YP_009045816.1 orf149b [Batis maritima]4.1e-1082.61Show/hide
Query:  MPISPGAKLSVPTLLNKRQAALMTDTLPWAFVLDRNLISWSAKKLP
        MPISPGAKLS PT L KRQAAL TD LP AFVL RNLISWSAKK P
Subjt:  MPISPGAKLSVPTLLNKRQAALMTDTLPWAFVLDRNLISWSAKKLP
TrEMBL top hitse value%identityAlignment
A0A068BFE0 Orf149b2.0e-1082.61Show/hide
Query:  MPISPGAKLSVPTLLNKRQAALMTDTLPWAFVLDRNLISWSAKKLP
        MPISPGAKLS PT L KRQAAL TD LP AFVL RNLISWSAKK P
Subjt:  MPISPGAKLSVPTLLNKRQAALMTDTLPWAFVLDRNLISWSAKKLP
A0A2N9FRH9 Reverse transcriptase Ty1/copia-type domain-containing protein4.6e-0751.52Show/hide
Query:  GAKLSVPTLLNKRQAALMTDTLPWAFVLDRNLISWSAKKLPPGRLAEVVFFRVDEAAQTRQHDGRA
        GAKLS PT + +RQAAL TD LP AFVL RNLISWSAKK P   L  ++ ++    +Q  +   R+
Subjt:  GAKLSVPTLLNKRQAALMTDTLPWAFVLDRNLISWSAKKLPPGRLAEVVFFRVDEAAQTRQHDGRA
A0A2N9GIJ9 Reverse transcriptase Ty1/copia-type domain-containing protein4.6e-0751.52Show/hide
Query:  GAKLSVPTLLNKRQAALMTDTLPWAFVLDRNLISWSAKKLPPGRLAEVVFFRVDEAAQTRQHDGRA
        GAKLS PT + +RQAAL TD LP AFVL RNLISWSAKK P   L  ++ ++    +Q  +   R+
Subjt:  GAKLSVPTLLNKRQAALMTDTLPWAFVLDRNLISWSAKKLPPGRLAEVVFFRVDEAAQTRQHDGRA
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAACCTATGCCTATATCTCCAGGTGCCAAGCTATCCGTCCCTACTCTACTAAACAAAAGGCAGGCTGCCCTGATGACCGACACTCTACCTTGGGCTTTTGTTCTCGA
TCGGAATCTCATTTCCTGGAGCGCTAAGAAGCTCCCCCCCGGAAGGCTGGCCGAGGTTGTGTTCTTCCGAGTGGACGAGGCAGCTCAGACCCGACAACATGATGGCCGTG
CACGAGACCACTTCGATGTTGAGTCGGGGGATGGGCTTATCTCGAAACCTGTTCCGGATGTGCCTCCGTCAAAAGGACCCATGACGATGAAGGAGAAGAAGGAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCAACCTATGCCTATATCTCCAGGTGCCAAGCTATCCGTCCCTACTCTACTAAACAAAAGGCAGGCTGCCCTGATGACCGACACTCTACCTTGGGCTTTTGTTCTCGA
TCGGAATCTCATTTCCTGGAGCGCTAAGAAGCTCCCCCCCGGAAGGCTGGCCGAGGTTGTGTTCTTCCGAGTGGACGAGGCAGCTCAGACCCGACAACATGATGGCCGTG
CACGAGACCACTTCGATGTTGAGTCGGGGGATGGGCTTATCTCGAAACCTGTTCCGGATGTGCCTCCGTCAAAAGGACCCATGACGATGAAGGAGAAGAAGGAGTAG
Protein sequenceShow/hide protein sequence
MQPMPISPGAKLSVPTLLNKRQAALMTDTLPWAFVLDRNLISWSAKKLPPGRLAEVVFFRVDEAAQTRQHDGRARDHFDVESGDGLISKPVPDVPPSKGPMTMKEKKE