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MS025947 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS025947
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionElaB/YqjD/DUF883 family membrane-anchored ribosome-binding protein
Genome locationscaffold35:459498..460570
RNA-Seq ExpressionMS025947
SyntenyMS025947
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
MBC7228409.1 tetratricopeptide repeat protein [Thermoflexales bacterium]4.7e-0733.11Show/hide
Query:  PVHLRPRARVGSGRPGS--XEWVAVARPTRAG---------VPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAG---------VPEWVAVA
        P  + P A   S  P +   EW+  A P  AG         +PEW+    P  AGVPE      P  A +PEW+    P  AG         +PEW+   
Subjt:  PVHLRPRARVGSGRPGS--XEWVAVARPTRAG---------VPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAG---------VPEWVAVA

Query:  RPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPPEWV
         P   G PE      P    +PEW+  A P  AG PE  A +  PEW+
Subjt:  RPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPPEWV

MBO9310853.1 hypothetical protein [Chloroflexus sp.]7.3e-0831.9Show/hide
Query:  WVAVARPTRAGVPEWV-----AVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWV-----AVARPTRAGVPEWVAVARPTRAGVPEWVAVAR
        W+  A P  + VP+W+     A +  +   VP W+  A P  A  P+W+  A P  + VP+W+     A +  +   VP W+  A P     P W+  A 
Subjt:  WVAVARPTRAGVPEWV-----AVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWV-----AVARPTRAGVPEWVAVARPTRAGVPEWVAVAR

Query:  PTRAGVPEWVAVARPP
        P+ A VP W+  A PP
Subjt:  PTRAGVPEWVAVARPP

MBO9313315.1 hypothetical protein [Chloroflexus sp.]2.1e-0728.32Show/hide
Query:  RARVGSGRPGSXEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVA
        +A  G+    +  W+       A  P+W+  A P  + VP+W+  A      VP W+  A      VP+W+  A      +P+W+  A P  A  P+W+ 
Subjt:  RARVGSGRPGSXEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVA

Query:  VARPTRAGVPEWV
         A P  + VP+W+
Subjt:  VARPTRAGVPEWV

MBQ5409685.1 hypothetical protein [Muribaculaceae bacterium]8.9e-0649.09Show/hide
Query:  PGSXEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAG
        P   E VA A P    VPE VA A P    VPE VA A P    VPE VA A P    VPE VA A P    VPE VA A P    VPE VA A P    
Subjt:  PGSXEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAG

Query:  VPEWVAVARP
        VPE V  A P
Subjt:  VPEWVAVARP

WP_044231697.1 hypothetical protein [Chloroflexus sp. Y-396-1]5.2e-1436.52Show/hide
Query:  EWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEW
        +W+  A P  + VP+W+  A P  A  P+W+  A P  A VP W+  A P     P+W+  A P  A VP W+  A P  A  P+W+  A P  A VP W
Subjt:  EWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEW

Query:  VAVARP-----PEWV
        +  A P     P+W+
Subjt:  VAVARP-----PEWV

TrEMBL top hitse value%identityAlignment
A0A7G5DPY0 Transcriptional regulator6.2e-0535.48Show/hide
Query:  PVHLRPRARVGSGRPGSXEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAG
        P   +P A     +P      A A+P  A  P   A A+P  A  P   A A+P  A  P   A A+P  A  P   A A+PT A  P   A A+P  A 
Subjt:  PVHLRPRARVGSGRPGSXEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAG

Query:  VPEWVAVARPTRAGVPEWVAVARP
         P   A A+PT A  P  +A A+P
Subjt:  VPEWVAVARPTRAGVPEWVAVARP

A0A7G7REB4 Transcriptional regulator1.4e-0432.41Show/hide
Query:  KRTKRRPSCSRTNSFIIILRAPVHLRPRARVGSGRPGSXEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAV
        K    +P+ ++T +       P   +P A     +P      A A+P  A  P   A A+PT A  P   A A+PT A  P   A A+P  A  P   A 
Subjt:  KRTKRRPSCSRTNSFIIILRAPVHLRPRARVGSGRPGSXEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAV

Query:  ARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARP
        A+P  A  P   A A+P  A  P   A A+P  A  P   A A+P
Subjt:  ARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARP

A0A7V9XWB8 ElaB/YqjD/DUF883 family membrane-anchored ribosome-binding protein1.4e-0432.41Show/hide
Query:  KRTKRRPSCSRTNSFIIILRAPVHLRPRARVGSGRPGSXEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAV
        K    +P+ ++T +       P   +P A     +P      A A+P  A  P   A A+PT A  P   A A+PT A  P   A A+P  A  P   A 
Subjt:  KRTKRRPSCSRTNSFIIILRAPVHLRPRARVGSGRPGSXEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAV

Query:  ARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARP
        A+P  A  P   A A+P  A  P   A A+P  A  P   A A+P
Subjt:  ARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARP

A0A7Z0FN85 Uncharacterized protein YjbJ (UPF0337 family)5.3e-0434.68Show/hide
Query:  PVHLRPRARVGSGRPGSXEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAG
        P   +P A     +P      A A+P  A  P   A A+P  A  P   A A+P  A  P   A A+P  A  P   A A+P  A  P   A A+P  A 
Subjt:  PVHLRPRARVGSGRPGSXEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAG

Query:  VPEWVAVARPTRAGVPEWVAVARP
         P   A A+PT A  P   A A+P
Subjt:  VPEWVAVARPTRAGVPEWVAVARP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTAGGTTCGTTTGAACCTTCAATCCATCTACGAAACGAAAAGGTGGAGAGTAGAGCAGAGGGGCGAACTGCCGGAACTTATGCAATGAGCCGACGGGAGACGGATTG
GGGAGGTGGAAAACGAACAAAGAGGAGACCGTCGTGTTCAAGGACTAATTCGTTTATCATAATACTGCGGGCGCCCGTCCACCTGCGCCCGCGTGCCAGAGTGGGTAGCG
GTCGCCCGGGTAGCNCAGAGTGGGTAGCGGTCGCCCGTCCCACCCGCGCCGGCGTGCCAGAGTGGGTAGCGGTCGCCCGTCCCACCCGCGCCGGCGTGCCAGAGTGGGTA
GCGGTCGCCCGTCCCACCCGCGCCGGCGTGCCAGAGTGGGTAGCGGTCGCCCGTCCCACCCGCGCCGGCGTGCCAGAGTGGGTAGCGGTCGCCCGTCCCACCCGCGCCGG
CGTGCCAGAGTGGGTAGCGGTCGCCCGTCCCACCCGCGCCGGCGTGCCAGAGTGGGTAGCGGTCGCCCGTCCCACCCGCGCCGGCGTGCCAGAGTGGGTAGCGGTCGCCC
GTCCGCCAGAGTGGGTAGGAGTGGGTTGCATGGGCCCGTCCACCTGCGTGCGAGAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTAGGTTCGTTTGAACCTTCAATCCATCTACGAAACGAAAAGGTGGAGAGTAGAGCAGAGGGGCGAACTGCCGGAACTTATGCAATGAGCCGACGGGAGACGGATTG
GGGAGGTGGAAAACGAACAAAGAGGAGACCGTCGTGTTCAAGGACTAATTCGTTTATCATAATACTGCGGGCGCCCGTCCACCTGCGCCCGCGTGCCAGAGTGGGTAGCG
GTCGCCCGGGTAGCNCAGAGTGGGTAGCGGTCGCCCGTCCCACCCGCGCCGGCGTGCCAGAGTGGGTAGCGGTCGCCCGTCCCACCCGCGCCGGCGTGCCAGAGTGGGTA
GCGGTCGCCCGTCCCACCCGCGCCGGCGTGCCAGAGTGGGTAGCGGTCGCCCGTCCCACCCGCGCCGGCGTGCCAGAGTGGGTAGCGGTCGCCCGTCCCACCCGCGCCGG
CGTGCCAGAGTGGGTAGCGGTCGCCCGTCCCACCCGCGCCGGCGTGCCAGAGTGGGTAGCGGTCGCCCGTCCCACCCGCGCCGGCGTGCCAGAGTGGGTAGCGGTCGCCC
GTCCGCCAGAGTGGGTAGGAGTGGGTTGCATGGGCCCGTCCACCTGCGTGCGAGAGTAG
Protein sequenceShow/hide protein sequence
MLGSFEPSIHLRNEKVESRAEGRTAGTYAMSRRETDWGGGKRTKRRPSCSRTNSFIIILRAPVHLRPRARVGSGRPGSXEWVAVARPTRAGVPEWVAVARPTRAGVPEWV
AVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPPEWVGVGCMGPSTCVRE