; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS025963 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS025963
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUbiquitin domain-containing protein
Genome locationscaffold35:1998751..1999179
RNA-Seq ExpressionMS025963
SyntenyMS025963
Gene Ontology termsGO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process (biological process)
GO:0005654 - nucleoplasm (cellular component)
GO:0005829 - cytosol (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0031593 - polyubiquitin modification-dependent protein binding (molecular function)
GO:0043130 - ubiquitin binding (molecular function)
GO:0070628 - proteasome binding (molecular function)
InterPro domainsIPR000626 - Ubiquitin-like domain
IPR029071 - Ubiquitin-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6603761.1 Ubiquitin domain-containing protein 7SL RNA1, partial [Cucurbita argyrosperma subsp. sororia]2.1e-3885.15Show/hide
Query:  VSAATSATAGSTGSSKKLKVMVKPKCGSQKIPMEVNASDNVGELKKELQKLQQRLHFHLPQEGFFFIYDRDVMDEDRSFRWHGVAHGDTIEIFNGSVTGG
        V+AAT AT+GS  S  KLKVMV+PK G+ KIPMEVN +DNVGELKKELQKLQQRLHFHLP EGFFFIYDRDVMDEDRSFRWHGVAHGDTIEIFNGSV+GG
Subjt:  VSAATSATAGSTGSSKKLKVMVKPKCGSQKIPMEVNASDNVGELKKELQKLQQRLHFHLPQEGFFFIYDRDVMDEDRSFRWHGVAHGDTIEIFNGSVTGG

Query:  S
        S
Subjt:  S

XP_008439960.1 PREDICTED: uncharacterized protein LOC103484590 [Cucumis melo]1.1e-3786.81Show/hide
Query:  STGSSKKLKVMVKPKCGSQKIPMEVNASDNVGELKKELQKLQQRLHFHLPQEGFFFIYDRDVMDEDRSFRWHGVAHGDTIEIFNGSVTGGS
        ST +S KLKVMVKPKCGS KIPMEVN +DNVGELKKEL+KLQQR+ FHLP EGFFFIYDRDVMDEDRSFRWHGVAHGDTIEIFNG++TGGS
Subjt:  STGSSKKLKVMVKPKCGSQKIPMEVNASDNVGELKKELQKLQQRLHFHLPQEGFFFIYDRDVMDEDRSFRWHGVAHGDTIEIFNGSVTGGS

XP_022142282.1 actin-related protein 8-like [Momordica charantia]1.5e-71100Show/hide
Query:  MIHHLQSQFPIEIDPTKDQIIMESAVVPLNELSDNNSEIEVVSAATSATAGSTGSSKKLKVMVKPKCGSQKIPMEVNASDNVGELKKELQKLQQRLHFHL
        MIHHLQSQFPIEIDPTKDQIIMESAVVPLNELSDNNSEIEVVSAATSATAGSTGSSKKLKVMVKPKCGSQKIPMEVNASDNVGELKKELQKLQQRLHFHL
Subjt:  MIHHLQSQFPIEIDPTKDQIIMESAVVPLNELSDNNSEIEVVSAATSATAGSTGSSKKLKVMVKPKCGSQKIPMEVNASDNVGELKKELQKLQQRLHFHL

Query:  PQEGFFFIYDRDVMDEDRSFRWHGVAHGDTIEIFNGSVTGGS
        PQEGFFFIYDRDVMDEDRSFRWHGVAHGDTIEIFNGSVTGGS
Subjt:  PQEGFFFIYDRDVMDEDRSFRWHGVAHGDTIEIFNGSVTGGS

XP_022950206.1 biquitin domain-containing protein 7SL RNA1-like [Cucurbita moschata]9.5e-3963.06Show/hide
Query:  IHHLQSQFPIEIDPTKDQIIMESAVVPLNELSD----------NNSEIEVV-----SAATSATAGSTGSSK-KLKVMVKPKCGSQKIPMEVNASDNVGEL
        IH + S  PI      + I+++S      EL D           NSE+EV      + +T+A   +TGSSK KLKVMV+PK G+ KIPMEVN +DNVGEL
Subjt:  IHHLQSQFPIEIDPTKDQIIMESAVVPLNELSD----------NNSEIEVV-----SAATSATAGSTGSSK-KLKVMVKPKCGSQKIPMEVNASDNVGEL

Query:  KKELQKLQQRLHFHLPQEGFFFIYDRDVMDEDRSFRWHGVAHGDTIEIFNGSVTGGS
        KKELQKLQQRLHFHLP EGFFFIYDRDVMDEDRSFRWHGVAHGDTIEIFNGSV+GGS
Subjt:  KKELQKLQQRLHFHLPQEGFFFIYDRDVMDEDRSFRWHGVAHGDTIEIFNGSVTGGS

XP_023543067.1 biquitin domain-containing protein 7SL RNA1-like [Cucurbita pepo subsp. pepo]8.1e-3875.63Show/hide
Query:  NELSDNNSEIEVV-----SAATSATAGSTGSSK-KLKVMVKPKCGSQKIPMEVNASDNVGELKKELQKLQQRLHFHLPQEGFFFIYDRDVMDEDRSFRWH
        +E+S+ NSE+EV      + +T+A   +TGSSK KLKVMV+PK G+ KIPMEVN +DNVGELKKELQKLQQRLHFHLP EGFFFIYDRDVMDEDRSFRWH
Subjt:  NELSDNNSEIEVV-----SAATSATAGSTGSSK-KLKVMVKPKCGSQKIPMEVNASDNVGELKKELQKLQQRLHFHLPQEGFFFIYDRDVMDEDRSFRWH

Query:  GVAHGDTIEIFNGSVTGGS
        GVA GDTIEIFNGSV+GGS
Subjt:  GVAHGDTIEIFNGSVTGGS

TrEMBL top hitse value%identityAlignment
A0A1S3AZZ9 uncharacterized protein LOC1034845905.1e-3886.81Show/hide
Query:  STGSSKKLKVMVKPKCGSQKIPMEVNASDNVGELKKELQKLQQRLHFHLPQEGFFFIYDRDVMDEDRSFRWHGVAHGDTIEIFNGSVTGGS
        ST +S KLKVMVKPKCGS KIPMEVN +DNVGELKKEL+KLQQR+ FHLP EGFFFIYDRDVMDEDRSFRWHGVAHGDTIEIFNG++TGGS
Subjt:  STGSSKKLKVMVKPKCGSQKIPMEVNASDNVGELKKELQKLQQRLHFHLPQEGFFFIYDRDVMDEDRSFRWHGVAHGDTIEIFNGSVTGGS

A0A2I4HQE1 ubiquitin domain-containing protein 7SL RNA1-like1.8e-3570.59Show/hide
Query:  ELSDNNSEIEV------VSAATSATAG-STGSSKKLKVMVKPKCGSQKIPMEVNASDNVGELKKELQKLQQRLHFHLPQEGFFFIYDRDVMDEDRSFRWH
        ELSD NS+I+V       +A T+  +G +T  SKKLK+MV PKCG++KIP+EVNASDNVGEL+KELQKLQQRLHFHLP EG+FFIY+++VMD+DRSFRWH
Subjt:  ELSDNNSEIEV------VSAATSATAG-STGSSKKLKVMVKPKCGSQKIPMEVNASDNVGELKKELQKLQQRLHFHLPQEGFFFIYDRDVMDEDRSFRWH

Query:  GVAHGDTIEIFNGSVTGGS
         V +GDTIEIFNGSVTGGS
Subjt:  GVAHGDTIEIFNGSVTGGS

A0A6J1CMB8 actin-related protein 8-like7.1e-72100Show/hide
Query:  MIHHLQSQFPIEIDPTKDQIIMESAVVPLNELSDNNSEIEVVSAATSATAGSTGSSKKLKVMVKPKCGSQKIPMEVNASDNVGELKKELQKLQQRLHFHL
        MIHHLQSQFPIEIDPTKDQIIMESAVVPLNELSDNNSEIEVVSAATSATAGSTGSSKKLKVMVKPKCGSQKIPMEVNASDNVGELKKELQKLQQRLHFHL
Subjt:  MIHHLQSQFPIEIDPTKDQIIMESAVVPLNELSDNNSEIEVVSAATSATAGSTGSSKKLKVMVKPKCGSQKIPMEVNASDNVGELKKELQKLQQRLHFHL

Query:  PQEGFFFIYDRDVMDEDRSFRWHGVAHGDTIEIFNGSVTGGS
        PQEGFFFIYDRDVMDEDRSFRWHGVAHGDTIEIFNGSVTGGS
Subjt:  PQEGFFFIYDRDVMDEDRSFRWHGVAHGDTIEIFNGSVTGGS

A0A6J1GE65 biquitin domain-containing protein 7SL RNA1-like4.6e-3963.06Show/hide
Query:  IHHLQSQFPIEIDPTKDQIIMESAVVPLNELSD----------NNSEIEVV-----SAATSATAGSTGSSK-KLKVMVKPKCGSQKIPMEVNASDNVGEL
        IH + S  PI      + I+++S      EL D           NSE+EV      + +T+A   +TGSSK KLKVMV+PK G+ KIPMEVN +DNVGEL
Subjt:  IHHLQSQFPIEIDPTKDQIIMESAVVPLNELSD----------NNSEIEVV-----SAATSATAGSTGSSK-KLKVMVKPKCGSQKIPMEVNASDNVGEL

Query:  KKELQKLQQRLHFHLPQEGFFFIYDRDVMDEDRSFRWHGVAHGDTIEIFNGSVTGGS
        KKELQKLQQRLHFHLP EGFFFIYDRDVMDEDRSFRWHGVAHGDTIEIFNGSV+GGS
Subjt:  KKELQKLQQRLHFHLPQEGFFFIYDRDVMDEDRSFRWHGVAHGDTIEIFNGSVTGGS

A0A6J1IPZ4 biquitin domain-containing protein 7SL RNA1-like7.4e-3761.73Show/hide
Query:  IHHLQSQFPIEIDPTKDQIIMESAVVPLNELSD----------NNSEIEVV-----SAATSATAGST-----GSSK-KLKVMVKPKCGSQKIPMEVNASD
        IH + S  PI      + I+++S   P  EL D           NSE+EV      + +T+A   +T     GSSK KLKVMV+PK G+ KIPMEVN +D
Subjt:  IHHLQSQFPIEIDPTKDQIIMESAVVPLNELSD----------NNSEIEVV-----SAATSATAGST-----GSSK-KLKVMVKPKCGSQKIPMEVNASD

Query:  NVGELKKELQKLQQRLHFHLPQEGFFFIYDRDVMDEDRSFRWHGVAHGDTIEIFNGSVTGGS
        NVGELKKELQKLQQRLHFHLP EGFFFIYDRDVMDEDRSFRWHGVAHGDTIEIFNGSV+GGS
Subjt:  NVGELKKELQKLQQRLHFHLPQEGFFFIYDRDVMDEDRSFRWHGVAHGDTIEIFNGSVTGGS

SwissProt top hitse value%identityAlignment
Q9ZQZ6 Ubiquitin domain-containing protein 7SL RNA25.7e-1046.75Show/hide
Query:  KLKVMVKP-KCGSQKIPMEVNASDNVGELKKELQKLQQRLHFHLPQEGFFFIYDRDVMDEDRSFRWHGVAHGDTIEI
        K  V VKP +  ++ I +EVNA DNV EL+KEL K+Q+R   +LP E F  +     + E +SF+W+ VA GDTIE+
Subjt:  KLKVMVKP-KCGSQKIPMEVNASDNVGELKKELQKLQQRLHFHLPQEGFFFIYDRDVMDEDRSFRWHGVAHGDTIEI

Q9ZT95 Ubiquitin domain-containing protein 7SL RNA12.2e-0939.09Show/hide
Query:  VVPLNELSDNNSEIEVVSAATSATAGSTGSS-KKLKVMVKP-KCGSQKIPMEVNASDNVGELKKELQKLQQRLHFHLPQEGFFFIYDRDVMDEDRSFRWH
        V P  + S + +  EV+  + S       ++  K  V VKP +  ++ I +EVNA DNV EL+KEL K+Q+R   +LP E F  +     + E +SF+W+
Subjt:  VVPLNELSDNNSEIEVVSAATSATAGSTGSS-KKLKVMVKP-KCGSQKIPMEVNASDNVGELKKELQKLQQRLHFHLPQEGFFFIYDRDVMDEDRSFRWH

Query:  GVAHGDTIEI
         VA GDTIEI
Subjt:  GVAHGDTIEI

Arabidopsis top hitse value%identityAlignment
AT4G02950.1 Ubiquitin family protein1.5e-1034.15Show/hide
Query:  ESAVVPLNELSDNNSEIEVVSAATSATAG-----STGSSKKLKVMVKPKCGSQKIPMEVNASDNVGELKKELQKLQQRLHFHLPQEGFFFI--YDRDVMD
        +S+ V +  + + + E++   ++ S +       +   + K+ VM++P   ++ I +EV A DNV EL+KEL K+Q+R   +LPQ  ++ I  + + V+ 
Subjt:  ESAVVPLNELSDNNSEIEVVSAATSATAG-----STGSSKKLKVMVKPKCGSQKIPMEVNASDNVGELKKELQKLQQRLHFHLPQEGFFFI--YDRDVMD

Query:  EDRSFRWHGVAHGDTIEIFNGSV
        ED+SF  +GVA+GDTI+I  G V
Subjt:  EDRSFRWHGVAHGDTIEIFNGSV

AT4G03350.1 ubiquitin family protein4.0e-1146.75Show/hide
Query:  KLKVMVKP-KCGSQKIPMEVNASDNVGELKKELQKLQQRLHFHLPQEGFFFIYDRDVMDEDRSFRWHGVAHGDTIEI
        K  V VKP +  ++ I +EVNA DNV EL+KEL K+Q+R   +LP E F  +     + E +SF+W+ VA GDTIE+
Subjt:  KLKVMVKP-KCGSQKIPMEVNASDNVGELKKELQKLQQRLHFHLPQEGFFFIYDRDVMDEDRSFRWHGVAHGDTIEI

AT4G03360.1 Ubiquitin family protein8.1e-1240.54Show/hide
Query:  NELSDNNSEIEVVSAATSATAGSTGSSKKLKVMVKPKCGSQKIPMEVNASDNVGELKKELQKLQQRLHFHLPQEGFFFI--YDRDVMDEDRSFRWHGVAH
        N +S  +  +E V   T + A       K+ VMV+P   ++ I +EV A DNV EL+KEL K+Q+R   +LPQ  ++ I  + + V+ ED+SF  +GVA+
Subjt:  NELSDNNSEIEVVSAATSATAGSTGSSKKLKVMVKPKCGSQKIPMEVNASDNVGELKKELQKLQQRLHFHLPQEGFFFI--YDRDVMDEDRSFRWHGVAH

Query:  GDTIEIFNGSV
        GDTI+I  G V
Subjt:  GDTIEIFNGSV

AT4G03370.1 Ubiquitin family protein1.2e-1546.3Show/hide
Query:  SDNNSEIEVVSAA-TSATAGSTGSSKKLKVMVKPKCGSQKIPMEVNASDNVGELKKELQKLQQRLHFHLPQEGFFFIYDRDVMDEDRSFRWHGVAHGDTI
        S ++S  EV++   T A   +     K+ VMV+P   +++I +EVN   NV  L+KEL K+Q+R   +LP EGFFFI+ +DV+ ED+SF  + VA GDTI
Subjt:  SDNNSEIEVVSAA-TSATAGSTGSSKKLKVMVKPKCGSQKIPMEVNASDNVGELKKELQKLQQRLHFHLPQEGFFFIYDRDVMDEDRSFRWHGVAHGDTI

Query:  EIFNGSVT
        EIF G VT
Subjt:  EIFNGSVT

AT4G05230.1 Ubiquitin-like superfamily protein1.3e-3068.13Show/hide
Query:  STGSSKKLKVMVKPKCGSQKIPMEVNASDNVGELKKELQKLQQRLHFHLPQEGFFFIYDRDVMDEDRSFRWHGVAHGDTIEIFNGSVTGGS
        +  + KKL+VMV PK G++KIP++VNA DNVGEL+KEL K+QQR    LPQEG+FFIY ++VMDE+RSFRWH V  GDTIEIFNGSV+GGS
Subjt:  STGSSKKLKVMVKPKCGSQKIPMEVNASDNVGELKKELQKLQQRLHFHLPQEGFFFIYDRDVMDEDRSFRWHGVAHGDTIEIFNGSVTGGS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCCACCATCTCCAATCCCAATTCCCCATCGAGATCGACCCCACCAAAGATCAGATTATTATGGAATCCGCGGTGGTCCCTCTAAACGAGCTGTCCGACAACAATTC
GGAGATTGAGGTGGTCTCGGCCGCCACGTCGGCGACGGCGGGCTCCACAGGGTCGTCGAAGAAGTTGAAAGTGATGGTGAAGCCGAAATGTGGGTCACAGAAGATACCGA
TGGAAGTGAACGCGTCTGACAACGTGGGGGAGCTGAAGAAGGAGCTGCAGAAGCTGCAGCAGAGACTCCATTTTCATCTCCCACAAGAGGGCTTCTTCTTCATTTACGAC
CGTGACGTCATGGACGAGGACCGCTCCTTCCGCTGGCATGGCGTCGCCCACGGCGACACCATCGAGATCTTCAATGGCAGTGTTACCGGCGGATCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGATCCACCATCTCCAATCCCAATTCCCCATCGAGATCGACCCCACCAAAGATCAGATTATTATGGAATCCGCGGTGGTCCCTCTAAACGAGCTGTCCGACAACAATTC
GGAGATTGAGGTGGTCTCGGCCGCCACGTCGGCGACGGCGGGCTCCACAGGGTCGTCGAAGAAGTTGAAAGTGATGGTGAAGCCGAAATGTGGGTCACAGAAGATACCGA
TGGAAGTGAACGCGTCTGACAACGTGGGGGAGCTGAAGAAGGAGCTGCAGAAGCTGCAGCAGAGACTCCATTTTCATCTCCCACAAGAGGGCTTCTTCTTCATTTACGAC
CGTGACGTCATGGACGAGGACCGCTCCTTCCGCTGGCATGGCGTCGCCCACGGCGACACCATCGAGATCTTCAATGGCAGTGTTACCGGCGGATCTTGA
Protein sequenceShow/hide protein sequence
MIHHLQSQFPIEIDPTKDQIIMESAVVPLNELSDNNSEIEVVSAATSATAGSTGSSKKLKVMVKPKCGSQKIPMEVNASDNVGELKKELQKLQQRLHFHLPQEGFFFIYD
RDVMDEDRSFRWHGVAHGDTIEIFNGSVTGGS