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MS026004 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS026004
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionF-box protein SKIP19-like
Genome locationscaffold35:3931064..3931905
RNA-Seq ExpressionMS026004
SyntenyMS026004
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581459.1 F-box protein SKIP19, partial [Cucurbita argyrosperma subsp. sororia]2.9e-0938.98Show/hide
Query:  MAMASKSNP-KCEEQARNWLELPEDITG-----------------------------------------------YDSEKICMQAVDRSRGQLVDINIEH
        MAM S S+P    E+ARNWLELP D+T                                                YD E++C QAVDRS GQL+ INIEH
Subjt:  MAMASKSNP-KCEEQARNWLELPEDITG-----------------------------------------------YDSEKICMQAVDRSRGQLVDINIEH

Query:  FGTDELLHYISQRIKSLR
        FGTD+LL YI+Q    LR
Subjt:  FGTDELLHYISQRIKSLR

XP_022146724.1 putative F-box/LRR-repeat protein 23 [Momordica charantia]6.2e-1243.48Show/hide
Query:  MASKSNPKCEEQARNWLELPEDITGY-----------------------------------------------DSEKICMQAVDRSRGQLVDINIEHFGT
        M S SNP  EE ARNWLELP D T                                                 D EK+CMQAVDRS GQLVDINIE FGT
Subjt:  MASKSNPKCEEQARNWLELPEDITGY-----------------------------------------------DSEKICMQAVDRSRGQLVDINIEHFGT

Query:  DELLHYISQRIKSLR
        DELLHYI+Q    LR
Subjt:  DELLHYISQRIKSLR

XP_022978592.1 F-box protein SKIP19-like [Cucurbita maxima]2.9e-0938.98Show/hide
Query:  MAMASKSNP-KCEEQARNWLELPEDITG-----------------------------------------------YDSEKICMQAVDRSRGQLVDINIEH
        MAM S S+P    E+ARNWLELP D+T                                                YD E++C QAVDRS GQL+ INIEH
Subjt:  MAMASKSNP-KCEEQARNWLELPEDITG-----------------------------------------------YDSEKICMQAVDRSRGQLVDINIEH

Query:  FGTDELLHYISQRIKSLR
        FGTD+LL YI+Q    LR
Subjt:  FGTDELLHYISQRIKSLR

XP_023543623.1 F-box protein SKIP19-like [Cucurbita pepo subsp. pepo]3.4e-1039.83Show/hide
Query:  MAMASKSNP-KCEEQARNWLELPEDITG-----------------------------------------------YDSEKICMQAVDRSRGQLVDINIEH
        MAM S S+P    E+ARNWLELP D+T                                                YD E++C QAVDRS GQL+ INIEH
Subjt:  MAMASKSNP-KCEEQARNWLELPEDITG-----------------------------------------------YDSEKICMQAVDRSRGQLVDINIEH

Query:  FGTDELLHYISQRIKSLR
        FGTD+LLHYI+Q    LR
Subjt:  FGTDELLHYISQRIKSLR

XP_038883784.1 F-box protein SKIP19-like [Benincasa hispida]2.2e-0939.13Show/hide
Query:  MASKSNP-KCEEQARNWLELPEDITG-----------------------------------------------YDSEKICMQAVDRSRGQLVDINIEHFG
        M S SNP   EE++RNWLELP D+                                                 YD E++C QAV RS GQLVDINIEHFG
Subjt:  MASKSNP-KCEEQARNWLELPEDITG-----------------------------------------------YDSEKICMQAVDRSRGQLVDINIEHFG

Query:  TDELLHYISQRIKSL
        TD+LLHYI+Q    L
Subjt:  TDELLHYISQRIKSL

TrEMBL top hitse value%identityAlignment
A0A251PHQ1 F-box domain-containing protein1.8e-0966.67Show/hide
Query:  GYDSEKICMQAVDRSRGQLVDINIEHFGTDELLHYISQR-IKSLRLSH
        GYD EK+C  A+DRS G L+DIN++HFGTDELL YI+ R IK LRL+H
Subjt:  GYDSEKICMQAVDRSRGQLVDINIEHFGTDELLHYISQR-IKSLRLSH

A0A4D9AMJ6 F-box domain-containing protein3.1e-0972.09Show/hide
Query:  YDSEKICMQAVDRSRGQLVDINIEHFGTDELLHYISQRIKSLR
        Y+ +K+C  AVDRS+GQL+DINIE+FGTDELLHYISQR   LR
Subjt:  YDSEKICMQAVDRSRGQLVDINIEHFGTDELLHYISQRIKSLR

A0A6J1CYW9 putative F-box/LRR-repeat protein 233.0e-1243.48Show/hide
Query:  MASKSNPKCEEQARNWLELPEDITGY-----------------------------------------------DSEKICMQAVDRSRGQLVDINIEHFGT
        M S SNP  EE ARNWLELP D T                                                 D EK+CMQAVDRS GQLVDINIE FGT
Subjt:  MASKSNPKCEEQARNWLELPEDITGY-----------------------------------------------DSEKICMQAVDRSRGQLVDINIEHFGT

Query:  DELLHYISQRIKSLR
        DELLHYI+Q    LR
Subjt:  DELLHYISQRIKSLR

A0A6J1ILH5 F-box protein SKIP19-like1.4e-0938.98Show/hide
Query:  MAMASKSNP-KCEEQARNWLELPEDITG-----------------------------------------------YDSEKICMQAVDRSRGQLVDINIEH
        MAM S S+P    E+ARNWLELP D+T                                                YD E++C QAVDRS GQL+ INIEH
Subjt:  MAMASKSNP-KCEEQARNWLELPEDITG-----------------------------------------------YDSEKICMQAVDRSRGQLVDINIEH

Query:  FGTDELLHYISQRIKSLR
        FGTD+LL YI+Q    LR
Subjt:  FGTDELLHYISQRIKSLR

A0A6P6UBH1 putative F-box/LRR-repeat protein 235.3e-0971.11Show/hide
Query:  TGYDSEKICMQAVDRSRGQLVDINIEHFGTDELLHYISQRIKSLR
        + YD EKIC  AVDRS+GQL+DINIE FGTD+LL+YISQR   LR
Subjt:  TGYDSEKICMQAVDRSRGQLVDINIEHFGTDELLHYISQRIKSLR

SwissProt top hitse value%identityAlignment
Q9M0U7 Putative F-box protein At4g054757.6e-0550Show/hide
Query:  YDSEKICMQAVDRSRGQLVDINIEHFGTDELLHYISQR---IKSLRLS
        +D E +C   VD S+G L++INIEHF +D LL YI  R   +KSL +S
Subjt:  YDSEKICMQAVDRSRGQLVDINIEHFGTDELLHYISQR---IKSLRLS

Q9M0U9 F-box protein SKIP195.3e-0653.19Show/hide
Query:  DITGYDSEKICMQAVDRSRGQLVDINIEHFGTDELLHYISQRIKSLR
        D   Y+ E +C  AVDRS+G LVDI I +FGT +LL+YI+ R  +LR
Subjt:  DITGYDSEKICMQAVDRSRGQLVDINIEHFGTDELLHYISQRIKSLR

Q9S9V9 Putative F-box/LRR-repeat protein 233.4e-0546.51Show/hide
Query:  YDSEKICMQAVDRSRGQLVDINIEHFGTDELLHYISQRIKSLR
        YD E +C  AVDRS G L++I I ++GT++L+ YI+ R  +L+
Subjt:  YDSEKICMQAVDRSRGQLVDINIEHFGTDELLHYISQRIKSLR

Arabidopsis top hitse value%identityAlignment
AT4G03630.1 RNI-like superfamily protein4.6e-0553.85Show/hide
Query:  KICMQAVDRSRGQLVDINIEHFGTDELLHYISQRIKSLR
        ++   AV  S+G  V+INIEHFGTD LL YI+ R  +LR
Subjt:  KICMQAVDRSRGQLVDINIEHFGTDELLHYISQRIKSLR

AT4G05460.1 RNI-like superfamily protein3.8e-0753.19Show/hide
Query:  DITGYDSEKICMQAVDRSRGQLVDINIEHFGTDELLHYISQRIKSLR
        D   Y+ E +C  AVDRS+G LVDI I +FGT +LL+YI+ R  +LR
Subjt:  DITGYDSEKICMQAVDRSRGQLVDINIEHFGTDELLHYISQRIKSLR

AT4G05475.1 RNI-like superfamily protein5.4e-0650Show/hide
Query:  YDSEKICMQAVDRSRGQLVDINIEHFGTDELLHYISQR---IKSLRLS
        +D E +C   VD S+G L++INIEHF +D LL YI  R   +KSL +S
Subjt:  YDSEKICMQAVDRSRGQLVDINIEHFGTDELLHYISQR---IKSLRLS

AT5G52480.1 RNI-like superfamily protein1.1e-0650Show/hide
Query:  EKICMQAVDRSRGQLVDINIEHFGTDELLHYISQR---IKSLRLSHDPVDDYDF
        E IC  AVDRS G L++INI  FG+D LL YI++R   ++SLRL    + D  F
Subjt:  EKICMQAVDRSRGQLVDINIEHFGTDELLHYISQR---IKSLRLSHDPVDDYDF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCATGGCGTCGAAATCGAACCCTAAATGTGAAGAGCAAGCGAGGAACTGGCTTGAACTGCCTGAAGACATCACGGGCTACGATTCGGAGAAGATATGTATGCAGGC
TGTTGATCGTAGTCGTGGCCAACTGGTTGACATCAATATCGAGCATTTTGGCACCGATGAGTTGCTCCACTATATCTCTCAGAGGATTAAAAGTTTGCGCCTGTCTCATG
ATCCCGTTGATGACTATGATTTCTCTGTCGATCCCTATATTGATAGCGACTACGAGGAATCATTTTCAAATCCTAGTAATCTGAAACGAAACGGTACGGGCAGTAACTGG
GAGCCAAACCCTAGTTCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCATGGCGTCGAAATCGAACCCTAAATGTGAAGAGCAAGCGAGGAACTGGCTTGAACTGCCTGAAGACATCACGGGCTACGATTCGGAGAAGATATGTATGCAGGC
TGTTGATCGTAGTCGTGGCCAACTGGTTGACATCAATATCGAGCATTTTGGCACCGATGAGTTGCTCCACTATATCTCTCAGAGGATTAAAAGTTTGCGCCTGTCTCATG
ATCCCGTTGATGACTATGATTTCTCTGTCGATCCCTATATTGATAGCGACTACGAGGAATCATTTTCAAATCCTAGTAATCTGAAACGAAACGGTACGGGCAGTAACTGG
GAGCCAAACCCTAGTTCATGA
Protein sequenceShow/hide protein sequence
MAMASKSNPKCEEQARNWLELPEDITGYDSEKICMQAVDRSRGQLVDINIEHFGTDELLHYISQRIKSLRLSHDPVDDYDFSVDPYIDSDYEESFSNPSNLKRNGTGSNW
EPNPSS