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MS026079 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS026079
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold239:2542450..2542791
RNA-Seq ExpressionMS026079
SyntenyMS026079
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PRQ32559.1 putative ribonuclease H-like domain-containing protein [Rosa chinensis]3.6e-0443.24Show/hide
Query:  NFPSCILESDSLSAVQALHSHSEIISEDGTIIKDIKNLAS-FGDSSFRYVSRKANGLAHHLASEAVASNTSLFW
        N    ++E+D L AVQA++S +E +SE G +I DIK L    GD +  +  R+AN +AH LAS +  SN  L W
Subjt:  NFPSCILESDSLSAVQALHSHSEIISEDGTIIKDIKNLAS-FGDSSFRYVSRKANGLAHHLASEAVASNTSLFW

RXH71423.1 hypothetical protein DVH24_018778 [Malus domestica]7.2e-0533.65Show/hide
Query:  AILERIWCIV--HRNFPSCILESDSLSAVQALHSHSEIISEDGTIIKD-IKNLASFGDSSFRYVSRKANGLAHHLASEAVASNTSLFWSNSFPSGLLQEA
        A+  R W +V   R F + ILE DSL  + AL   S  +SE G ++++    +A    +S+ +V R+ANG+AH LA   + +++S +W    P  +L   
Subjt:  AILERIWCIV--HRNFPSCILESDSLSAVQALHSHSEIISEDGTIIKD-IKNLASFGDSSFRYVSRKANGLAHHLASEAVASNTSLFWSNSFPSGLLQEA

Query:  FREA
        F E+
Subjt:  FREA

XP_024156286.1 uncharacterized protein LOC112164301 [Rosa chinensis]2.1e-0436.08Show/hide
Query:  MAILERIWCIVHRNFPSCILESDSLSAVQALHSHSEIISEDGTIIKDIKNLA-SFGDSSFRYVSRKANGLAHHLASEAVASNTSLFWSNSFPSGLLQ
        +A+L  +   +H  F +  +E D+LS +  LH  S+ +S +G II ++K+L  SF   S  +V R+ N +AH LA EA+  +  L    S PS L Q
Subjt:  MAILERIWCIVHRNFPSCILESDSLSAVQALHSHSEIISEDGTIIKDIKNLA-SFGDSSFRYVSRKANGLAHHLASEAVASNTSLFWSNSFPSGLLQ

XP_024178556.2 uncharacterized protein LOC112184522 [Rosa chinensis]2.1e-0440.96Show/hide
Query:  NFPSCILESDSLSAVQALHSHSEIISEDGTIIKDIKNLAS-FGDSSFRYVSRKANGLAHHLASEAVASNTSLFWSNSFPSGLL
        N    ++E+D L AVQA++S +E +SE G +I DIK L    GD +  +  R+AN +AH LAS +  SN  L W    P  +L
Subjt:  NFPSCILESDSLSAVQALHSHSEIISEDGTIIKDIKNLAS-FGDSSFRYVSRKANGLAHHLASEAVASNTSLFWSNSFPSGLL

XP_042972859.1 uncharacterized protein LOC122304666 [Carya illinoinensis]2.7e-0431.25Show/hide
Query:  MAILERIWCIVHRNFPSCILESDSLSAVQALHSHSEIISEDGTIIKDIKNLA-SFGDSSFRYVSRKANGLAHHLASEAVASNTSLFWSNSFPSGLLQEAF
        +A+L  +   V    P  ILESDSL  V  L+ +SE ++E   I++DI+ L   F ++   +V R  NG AH LA  A   +  + W +S PS + Q  +
Subjt:  MAILERIWCIVHRNFPSCILESDSLSAVQALHSHSEIISEDGTIIKDIKNLA-SFGDSSFRYVSRKANGLAHHLASEAVASNTSLFWSNSFPSGLLQEAF

Query:  REASNVAHVAML
         + +++   +++
Subjt:  REASNVAHVAML

TrEMBL top hitse value%identityAlignment
A0A2P6QEG4 Putative ribonuclease H-like domain-containing protein1.7e-0443.24Show/hide
Query:  NFPSCILESDSLSAVQALHSHSEIISEDGTIIKDIKNLAS-FGDSSFRYVSRKANGLAHHLASEAVASNTSLFW
        N    ++E+D L AVQA++S +E +SE G +I DIK L    GD +  +  R+AN +AH LAS +  SN  L W
Subjt:  NFPSCILESDSLSAVQALHSHSEIISEDGTIIKDIKNLAS-FGDSSFRYVSRKANGLAHHLASEAVASNTSLFW

A0A498HHA7 RNase H domain-containing protein2.2e-0433.01Show/hide
Query:  MAILERIWCIVHRNFPSCILESDSLSAVQALHSHSEIISEDGTIIKDIK-NLASFGDSSFRYVSRKANGLAHHLASEAVASNTSLFWSNSFPSGLLQEAF
        +A+ + ++ +V RN P  I++SDSL  VQA+ S  +  S    +++DI+ +L  F DS   YV R  N  AH +A  A++  ++  W    P  L+ E  
Subjt:  MAILERIWCIVHRNFPSCILESDSLSAVQALHSHSEIISEDGTIIKDIK-NLASFGDSSFRYVSRKANGLAHHLASEAVASNTSLFWSNSFPSGLLQEAF

Query:  REA
         E+
Subjt:  REA

A0A498HRE8 RNase H domain-containing protein3.5e-0533.65Show/hide
Query:  AILERIWCIV--HRNFPSCILESDSLSAVQALHSHSEIISEDGTIIKD-IKNLASFGDSSFRYVSRKANGLAHHLASEAVASNTSLFWSNSFPSGLLQEA
        A+  R W +V   R F + ILE DSL  + AL   S  +SE G ++++    +A    +S+ +V R+ANG+AH LA   + +++S +W    P  +L   
Subjt:  AILERIWCIV--HRNFPSCILESDSLSAVQALHSHSEIISEDGTIIKD-IKNLASFGDSSFRYVSRKANGLAHHLASEAVASNTSLFWSNSFPSGLLQEA

Query:  FREA
        F E+
Subjt:  FREA

A0A498K7Q8 Uncharacterized protein (Fragment)6.5e-0434.69Show/hide
Query:  WCIV--HRNFPSCILESDSLSAVQALHSHSEIISEDGTIIKDIKNL-ASFGDSSFRYVSRKANGLAHHLASEAVASNTSLFWSNSFPSGLLQEAFREA
        W ++   + F + ILE DSL  V AL   S        ++KD + L AS  + S+ +V R+ANG+AH LA  A+ S +S  W    P  +L    +E+
Subjt:  WCIV--HRNFPSCILESDSLSAVQALHSHSEIISEDGTIIKDIKNL-ASFGDSSFRYVSRKANGLAHHLASEAVASNTSLFWSNSFPSGLLQEAFREA

A0A803QDP5 Uncharacterized protein1.7e-0437.89Show/hide
Query:  MAILERIWCIVHRNFPSCILESDSLSAVQALHSHSEIISEDGTIIKDIKNLA-SFGDSSFRYVSRKANGLAHHLASEAVASNTSLFWSNSFPSGL
        M I E +  +  +++    +ESDSL  VQA+HS  E+ S  G I+KD K+L  S  + S R+V R AN  AH +A ++      LF  ++ PS L
Subjt:  MAILERIWCIVHRNFPSCILESDSLSAVQALHSHSEIISEDGTIIKDIKNLA-SFGDSSFRYVSRKANGLAHHLASEAVASNTSLFWSNSFPSGL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTATTTTGGAGAGAATTTGGTGTATCGTTCATCGAAACTTCCCTAGTTGCATTCTGGAGTCAGACTCGTTGTCCGCTGTTCAAGCTCTTCATAGCCATTCTGAAAT
CATCAGCGAAGATGGAACGATCATCAAGGATATTAAGAATTTGGCTTCATTTGGTGATTCCTCTTTCAGGTATGTCTCCAGGAAGGCGAATGGCTTAGCTCACCATTTGG
CGTCTGAGGCAGTAGCGTCGAACACATCTTTGTTTTGGTCTAATTCGTTTCCCTCTGGGCTTCTACAAGAGGCTTTTAGAGAAGCATCTAATGTAGCCCACGTGGCAATG
TTATCTATCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTATTTTGGAGAGAATTTGGTGTATCGTTCATCGAAACTTCCCTAGTTGCATTCTGGAGTCAGACTCGTTGTCCGCTGTTCAAGCTCTTCATAGCCATTCTGAAAT
CATCAGCGAAGATGGAACGATCATCAAGGATATTAAGAATTTGGCTTCATTTGGTGATTCCTCTTTCAGGTATGTCTCCAGGAAGGCGAATGGCTTAGCTCACCATTTGG
CGTCTGAGGCAGTAGCGTCGAACACATCTTTGTTTTGGTCTAATTCGTTTCCCTCTGGGCTTCTACAAGAGGCTTTTAGAGAAGCATCTAATGTAGCCCACGTGGCAATG
TTATCTATCTGA
Protein sequenceShow/hide protein sequence
MAILERIWCIVHRNFPSCILESDSLSAVQALHSHSEIISEDGTIIKDIKNLASFGDSSFRYVSRKANGLAHHLASEAVASNTSLFWSNSFPSGLLQEAFREASNVAHVAM
LSI