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MS026084 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS026084
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionvegetative cell wall protein gp1-like
Genome locationscaffold239:3194585..3195052
RNA-Seq ExpressionMS026084
SyntenyMS026084
Gene Ontology termsNA
InterPro domainsIPR044959 - Classical arabinogalactan protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036330.1 hypothetical protein E6C27_scaffold18G001290 [Cucumis melo var. makuwa]6.5e-3367.07Show/hide
Query:  MGFSGVRVVVIFALLAASCLAQSPGPAPSLP---------PAPSPVFFPPAPTPSPNRAPSPAPTPASPSPAPEAPSPTPAAPSPAPTS-TPTPTPI--P
        MGFSGVR VVIFALL   C+AQ+P PAP  P         PAPSPV  PP+PTP+PNRAPSP+PTP SPSPAP+APSP P  P+PAP    PTPTPI  P
Subjt:  MGFSGVRVVVIFALLAASCLAQSPGPAPSLP---------PAPSPVFFPPAPTPSPNRAPSPAPTPASPSPAPEAPSPTPAAPSPAPTS-TPTPTPI--P

Query:  SPSGSPAGAPVPAFPSPPSPAGNGVPVPSPAPQPPPADNPAGAASQIGRAATFGIALAGTLFAVVLA
        +PSG P    VP   SPPSP   G+ VPSPAPQ PPADNPAGAAS IG AAT GIALAGTLFAV+L+
Subjt:  SPSGSPAGAPVPAFPSPPSPAGNGVPVPSPAPQPPPADNPAGAASQIGRAATFGIALAGTLFAVVLA

XP_022950235.1 vegetative cell wall protein gp1-like [Cucurbita moschata]4.7e-2358.01Show/hide
Query:  MGFSGVRVVVIFALLAASCLAQSPGPAPS-------------LPPAPSPVFFPPAPTPSPNRAPSPAPTPASPSPAPEAPSPTPAAPSPAP---------
        MG SGVR+VVIFAL+A  C AQ+P P P+               PAPSPV FPP+P+ SP RAPSP+PT ASPSPA EAPSP P+A +PAP         
Subjt:  MGFSGVRVVVIFALLAASCLAQSPGPAPS-------------LPPAPSPVFFPPAPTPSPNRAPSPAPTPASPSPAPEAPSPTPAAPSPAP---------

Query:  -TSTPTPTPI--PSPSGSPAGAP-VPAFPSPPSPAGNGVPVPSPAPQPPPADNPAGAASQIGRAATFGIALAGTLFAVVLA
         TS PTP P   P PSGSPAGAP VP   SPPSP+ +G   PSP P+ P AD+PAGAAS IG A T GIA+AGTL A+V+A
Subjt:  -TSTPTPTPI--PSPSGSPAGAP-VPAFPSPPSPAGNGVPVPSPAPQPPPADNPAGAASQIGRAATFGIALAGTLFAVVLA

XP_022978568.1 vegetative cell wall protein gp1-like [Cucurbita maxima]1.5e-2460.45Show/hide
Query:  MGFSGVRVVVIFALLAASCLAQSPGPAPSLP---------PAPSPVFFPPAPTPSPNRAPSPAPTPASPSPAPEAPSPTPAAPSPAP----------TST
        MGFSGVR+VVIFAL+A  C AQ+P PA   P         PAPSPV FPP+P+ SP RAPSP+PT ASPSPA EAPSP P+A +PAP          TS 
Subjt:  MGFSGVRVVVIFALLAASCLAQSPGPAPSLP---------PAPSPVFFPPAPTPSPNRAPSPAPTPASPSPAPEAPSPTPAAPSPAP----------TST

Query:  PTPTPI--PSPSGSPAGAP-VPAFPSPPSPAGNGVPVPSPAPQPPPADNPAGAASQIGRAATFGIALAGTLFAVVLA
        PTP P   P PSGSPAGAP VP   SPPSP+ +G   PSP P+ P AD+PAGAAS IG A T GIA+AGTL A+V+A
Subjt:  PTPTPI--PSPSGSPAGAP-VPAFPSPPSPAGNGVPVPSPAPQPPPADNPAGAASQIGRAATFGIALAGTLFAVVLA

XP_023544207.1 vegetative cell wall protein gp1-like [Cucurbita pepo subsp. pepo]1.5e-2459.12Show/hide
Query:  MGFSGVRVVVIFALLAASCLAQSPGPAPS-------------LPPAPSPVFFPPAPTPSPNRAPSPAPTPASPSPAPEAPSPTPAAPSPAP---------
        MGFSGVR+VVIFAL+A  C+AQ+P P P+               PAPSPV FPPAP+ SP RAPSP+PT ASPSPA EAPSP P+A +PAP         
Subjt:  MGFSGVRVVVIFALLAASCLAQSPGPAPS-------------LPPAPSPVFFPPAPTPSPNRAPSPAPTPASPSPAPEAPSPTPAAPSPAP---------

Query:  -TSTPTPTPI--PSPSGSPAGAP-VPAFPSPPSPAGNGVPVPSPAPQPPPADNPAGAASQIGRAATFGIALAGTLFAVVLA
         TS PTP P   P PSGSPAGAP VP   SPPSP+  G   PSP P+ P AD+PAGAAS IG A T GIA+AGTL A+V+A
Subjt:  -TSTPTPTPI--PSPSGSPAGAP-VPAFPSPPSPAGNGVPVPSPAPQPPPADNPAGAASQIGRAATFGIALAGTLFAVVLA

XP_038881138.1 vegetative cell wall protein gp1-like [Benincasa hispida]2.3e-3067.88Show/hide
Query:  MGFSGVRVVVIFALLAASCLAQSPGPAPS-------LP--PAPSPVFFPPAPTPSPNRAPSPAPTPASPSPAPEAPSPTPAAPSPAPTSTPTPTPIPSPS
        MGFSGVR VVIFALL   C+AQ+P PAP        LP  PAPSPV FPP+PTP+PNRAPS +P PASPSPAPEAPSP PA P+PAP +T  PTP PS S
Subjt:  MGFSGVRVVVIFALLAASCLAQSPGPAPS-------LP--PAPSPVFFPPAPTPSPNRAPSPAPTPASPSPAPEAPSPTPAAPSPAPTSTPTPTPIPSPS

Query:  GSPAGAP-VPAFPSPPSPAGNGVPVPSPAPQPPPADNPAGAASQIGRAATFGIALAGTLFAVVLA
         +P+G P VP   SPPSP   G+ VPS APQ P ADNPAGAAS IG AA FGIA+AGTLFAV+LA
Subjt:  GSPAGAP-VPAFPSPPSPAGNGVPVPSPAPQPPPADNPAGAASQIGRAATFGIALAGTLFAVVLA

TrEMBL top hitse value%identityAlignment
A0A0A0KG74 Uncharacterized protein4.0e-2862.2Show/hide
Query:  MGFSGVRVVVIFALLAASCLAQSPGPAPSLP---------PAPSPVFFPPAPTPSPNRAPSPAPTPASPSPAPEAPSPTPAAPSPAPTSTPTPTPIPSPS
        MGFSGVR V+IFALL   C+AQ+P PAP  P         PAPSPV  PP+PTP+PNRAPSP+PTP SPSPAP+A SP PA  +P    TPTP   P+PS
Subjt:  MGFSGVRVVVIFALLAASCLAQSPGPAPSLP---------PAPSPVFFPPAPTPSPNRAPSPAPTPASPSPAPEAPSPTPAAPSPAPTSTPTPTPIPSPS

Query:  GSPAGAPVPAFPSPPSPAGNGVPVPSPAPQPPPADNPAGAASQIGRAATFGIALAGTLFAVVLA
        G P    +P   SPPSP   G+ VPSPAPQ P ADNPAGA S IG AAT GIALAGTLF V+L+
Subjt:  GSPAGAPVPAFPSPPSPAGNGVPVPSPAPQPPPADNPAGAASQIGRAATFGIALAGTLFAVVLA

A0A5D3CNQ6 Uncharacterized protein3.2e-3367.07Show/hide
Query:  MGFSGVRVVVIFALLAASCLAQSPGPAPSLP---------PAPSPVFFPPAPTPSPNRAPSPAPTPASPSPAPEAPSPTPAAPSPAPTS-TPTPTPI--P
        MGFSGVR VVIFALL   C+AQ+P PAP  P         PAPSPV  PP+PTP+PNRAPSP+PTP SPSPAP+APSP P  P+PAP    PTPTPI  P
Subjt:  MGFSGVRVVVIFALLAASCLAQSPGPAPSLP---------PAPSPVFFPPAPTPSPNRAPSPAPTPASPSPAPEAPSPTPAAPSPAPTS-TPTPTPI--P

Query:  SPSGSPAGAPVPAFPSPPSPAGNGVPVPSPAPQPPPADNPAGAASQIGRAATFGIALAGTLFAVVLA
        +PSG P    VP   SPPSP   G+ VPSPAPQ PPADNPAGAAS IG AAT GIALAGTLFAV+L+
Subjt:  SPSGSPAGAPVPAFPSPPSPAGNGVPVPSPAPQPPPADNPAGAASQIGRAATFGIALAGTLFAVVLA

A0A6J1GF55 vegetative cell wall protein gp1-like2.3e-2358.01Show/hide
Query:  MGFSGVRVVVIFALLAASCLAQSPGPAPS-------------LPPAPSPVFFPPAPTPSPNRAPSPAPTPASPSPAPEAPSPTPAAPSPAP---------
        MG SGVR+VVIFAL+A  C AQ+P P P+               PAPSPV FPP+P+ SP RAPSP+PT ASPSPA EAPSP P+A +PAP         
Subjt:  MGFSGVRVVVIFALLAASCLAQSPGPAPS-------------LPPAPSPVFFPPAPTPSPNRAPSPAPTPASPSPAPEAPSPTPAAPSPAP---------

Query:  -TSTPTPTPI--PSPSGSPAGAP-VPAFPSPPSPAGNGVPVPSPAPQPPPADNPAGAASQIGRAATFGIALAGTLFAVVLA
         TS PTP P   P PSGSPAGAP VP   SPPSP+ +G   PSP P+ P AD+PAGAAS IG A T GIA+AGTL A+V+A
Subjt:  -TSTPTPTPI--PSPSGSPAGAP-VPAFPSPPSPAGNGVPVPSPAPQPPPADNPAGAASQIGRAATFGIALAGTLFAVVLA

A0A6J1ITI1 vegetative cell wall protein gp1-like7.1e-2560.45Show/hide
Query:  MGFSGVRVVVIFALLAASCLAQSPGPAPSLP---------PAPSPVFFPPAPTPSPNRAPSPAPTPASPSPAPEAPSPTPAAPSPAP----------TST
        MGFSGVR+VVIFAL+A  C AQ+P PA   P         PAPSPV FPP+P+ SP RAPSP+PT ASPSPA EAPSP P+A +PAP          TS 
Subjt:  MGFSGVRVVVIFALLAASCLAQSPGPAPSLP---------PAPSPVFFPPAPTPSPNRAPSPAPTPASPSPAPEAPSPTPAAPSPAP----------TST

Query:  PTPTPI--PSPSGSPAGAP-VPAFPSPPSPAGNGVPVPSPAPQPPPADNPAGAASQIGRAATFGIALAGTLFAVVLA
        PTP P   P PSGSPAGAP VP   SPPSP+ +G   PSP P+ P AD+PAGAAS IG A T GIA+AGTL A+V+A
Subjt:  PTPTPI--PSPSGSPAGAP-VPAFPSPPSPAGNGVPVPSPAPQPPPADNPAGAASQIGRAATFGIALAGTLFAVVLA

A0A6J1KP28 classical arabinogalactan protein 4-like5.4e-1754.49Show/hide
Query:  MGFSGVRVVVIFALLAASCLAQSPGPAPSLPPAPSPVFFPPAPTPSPNRAPSPAPTPASPSPAPEAPSPTPAAPSPAP-TSTPTPTPIPSPSGSPAGAPV
        MGFSGVR +++ ALLAA+C+AQ+P P P+           PAPT  P++       P  P+PA  APS +PA+P+PAP TSTPTP PI +PSGSPAG PV
Subjt:  MGFSGVRVVVIFALLAASCLAQSPGPAPSLPPAPSPVFFPPAPTPSPNRAPSPAPTPASPSPAPEAPSPTPAAPSPAP-TSTPTPTPIPSPSGSPAGAPV

Query:  PAFPSPPSPAGNGVPVPSPAPQPPPADNPAGAASQIGRAATFGIALAGTLFAVVLA
           P   SP       PS AP+ PPADNP GAASQIGRA T G+A+AG+L AV+LA
Subjt:  PAFPSPPSPAGNGVPVPSPAPQPPPADNPAGAASQIGRAATFGIALAGTLFAVVLA

SwissProt top hitse value%identityAlignment
O10341 Uncharacterized 29.3 kDa protein4.9e-0743.94Show/hide
Query:  LAQSPGPAPSLPPAPSPVFFP---PAPTPSPNRAPSPAPTPASPSPAPEAPSPTPAAPSPAPTSTPTPTPIPSPSGSPAGAPVPAFPSPPSPAGNGVPVP
        L+ +P P+P+L P PSP   P   P+PTPSP   PSP P+P +P+P+P  PSPTP  PSP PT +PTP+P PSP+ +P+  P P     P+P+    P P
Subjt:  LAQSPGPAPSLPPAPSPVFFP---PAPTPSPNRAPSPAPTPASPSPAPEAPSPTPAAPSPAPTSTPTPTPIPSPSGSPAGAPVPAFPSPPSPAGNGVPVP

Query:  SPAPQPPPADNPAGAASQIGRAATFGIALAGT
        +P+P PPP+  P  + S +G    F  ++  T
Subjt:  SPAPQPPPADNPAGAASQIGRAATFGIALAGT

Arabidopsis top hitse value%identityAlignment
AT5G56330.1 alpha carbonic anhydrase 83.0e-0442.42Show/hide
Query:  MGFSGVRVVVIFALLAASCLAQSPGPAPSLP-PAPSPVFFPPAPTPSPN-RAPSPAPTPASPSPAPEAPSPTPAAPSPAPTSTPTPTPIPSPSGSPAG-A
        M  S +  V++   ++ + ++ +P P P  P PAP+P    P PTP+P    P P P P  P P P AP+PTP  P PAP  TP P P P P+ +P    
Subjt:  MGFSGVRVVVIFALLAASCLAQSPGPAPSLP-PAPSPVFFPPAPTPSPN-RAPSPAPTPASPSPAPEAPSPTPAAPSPAPTSTPTPTPIPSPSGSPAG-A

Query:  PVPAFPSPPSPAGNGVPVPSPAPQPPPADNPA
        P PA P+PP P     P P+PAP+P PA  PA
Subjt:  PVPAFPSPPSPAGNGVPVPSPAPQPPPADNPA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGATTCTCCGGCGTTCGAGTGGTTGTTATTTTTGCTTTGTTGGCGGCGTCGTGCTTGGCTCAGTCGCCGGGTCCTGCACCGTCGCTACCTCCGGCGCCTTCTCCGGT
CTTTTTCCCTCCAGCTCCGACTCCATCGCCAAACAGAGCACCATCACCTGCTCCGACTCCGGCATCACCCTCACCTGCTCCGGAAGCTCCTTCGCCGACGCCGGCAGCAC
CTTCCCCAGCTCCAACCTCCACTCCTACTCCTACTCCTATTCCTTCGCCTAGTGGATCTCCCGCCGGTGCTCCTGTTCCAGCTTTCCCTTCTCCTCCTTCACCTGCCGGA
AACGGGGTGCCCGTGCCTTCACCAGCTCCCCAACCACCGCCGGCCGACAACCCAGCTGGAGCGGCGTCGCAAATCGGCCGGGCAGCCACATTCGGTATCGCTCTGGCCGG
AACCCTGTTCGCGGTGGTGTTAGCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGATTCTCCGGCGTTCGAGTGGTTGTTATTTTTGCTTTGTTGGCGGCGTCGTGCTTGGCTCAGTCGCCGGGTCCTGCACCGTCGCTACCTCCGGCGCCTTCTCCGGT
CTTTTTCCCTCCAGCTCCGACTCCATCGCCAAACAGAGCACCATCACCTGCTCCGACTCCGGCATCACCCTCACCTGCTCCGGAAGCTCCTTCGCCGACGCCGGCAGCAC
CTTCCCCAGCTCCAACCTCCACTCCTACTCCTACTCCTATTCCTTCGCCTAGTGGATCTCCCGCCGGTGCTCCTGTTCCAGCTTTCCCTTCTCCTCCTTCACCTGCCGGA
AACGGGGTGCCCGTGCCTTCACCAGCTCCCCAACCACCGCCGGCCGACAACCCAGCTGGAGCGGCGTCGCAAATCGGCCGGGCAGCCACATTCGGTATCGCTCTGGCCGG
AACCCTGTTCGCGGTGGTGTTAGCGTAG
Protein sequenceShow/hide protein sequence
MGFSGVRVVVIFALLAASCLAQSPGPAPSLPPAPSPVFFPPAPTPSPNRAPSPAPTPASPSPAPEAPSPTPAAPSPAPTSTPTPTPIPSPSGSPAGAPVPAFPSPPSPAG
NGVPVPSPAPQPPPADNPAGAASQIGRAATFGIALAGTLFAVVLA