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MS026141 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS026141
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationscaffold739:9398..9889
RNA-Seq ExpressionMS026141
SyntenyMS026141
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050146.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.9e-1138.25Show/hide
Query:  KGAQFPNSGNFNNKSSGNRGRGNRGNN-GDGNFSKGSGGGF---PQNAPPHFNNGPH--GPVDFIQL----ANFLILVAAIIPPISLEV-------VACT
        +G +F ++GN N  SS N    NRG N   G+   GS   F   P +  P++NN      P  F  +       +    +  P    E        + C 
Subjt:  KGAQFPNSGNFNNKSSGNRGRGNRGNN-GDGNFSKGSGGGF---PQNAPPHFNNGPH--GPVDFIQL----ANFLILVAAIIPPISLEV-------VACT

Query:  -------GALDCYNRMNFAFQGRHPPAQLAAIVVNATTPSSSSNTHNNFGYQIVAA-AHVTNDLANLNLVDSYNGEESVTVDN
               GALDCYNRMNF++QGRHPP+QLAA+ VN+     S    NNF         H+TN+LANLNL ++YNGEE+VTV+N
Subjt:  -------GALDCYNRMNFAFQGRHPPAQLAAIVVNATTPSSSSNTHNNFGYQIVAA-AHVTNDLANLNLVDSYNGEESVTVDN

KAA0067173.1 retrotransposon protein [Cucumis melo var. makuwa]1.0e-1239.49Show/hide
Query:  KGAQFPNSGN--FNNK-SSGNRG----RGNRGNNGDGNFSKGSGGGFPQNAPPHFNNGPHGPVDFIQLANFLIL---VAAII-------PPISLEV----
        +G +F ++GN  FN+  +S NRG     G+RG   + NF     G  P +  P++NN  HGP  F+  ++F  +      II       P   LE     
Subjt:  KGAQFPNSGN--FNNK-SSGNRG----RGNRGNNGDGNFSKGSGGGFPQNAPPHFNNGPHGPVDFIQLANFLIL---VAAII-------PPISLEV----

Query:  ---VACT-------GALDCYNRMNFAFQGRHPPAQLAAIVVNATTPSSSSNTHNNF-----GYQIVAAAHVTNDLANLNLVDSYNGEESVTVDNG
           + C        GALDCYN MNF++Q RH P+QLAA+ VN+     SS   NNF     GY +    H+TN+LANLNL ++YNGEE+VTV NG
Subjt:  ---VACT-------GALDCYNRMNFAFQGRHPPAQLAAIVVNATTPSSSSNTHNNF-----GYQIVAAAHVTNDLANLNLVDSYNGEESVTVDNG

RVW77387.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]6.9e-0952Show/hide
Query:  ALDCYNRMNFAFQGRHPPAQLAAIVVNATTPSSSSNTHNNFGYQIVAAAHVTNDLANLNLVDSYNGEESVTVDNG
        ALDCYNRMN+AFQGRHPP +LAA+V  A T  +  N H  +     A  HVT+D ANL +   Y G ++V V NG
Subjt:  ALDCYNRMNFAFQGRHPPAQLAAIVVNATTPSSSSNTHNNFGYQIVAAAHVTNDLANLNLVDSYNGEESVTVDNG

TYK06402.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.9e-1138.25Show/hide
Query:  KGAQFPNSGNFNNKSSGNRGRGNRGNN-GDGNFSKGSGGGF---PQNAPPHFNNGPH--GPVDFIQL----ANFLILVAAIIPPISLEV-------VACT
        +G +F ++GN N  SS N    NRG N   G+   GS   F   P +  P++NN      P  F  +       +    +  P    E        + C 
Subjt:  KGAQFPNSGNFNNKSSGNRGRGNRGNN-GDGNFSKGSGGGF---PQNAPPHFNNGPH--GPVDFIQL----ANFLILVAAIIPPISLEV-------VACT

Query:  -------GALDCYNRMNFAFQGRHPPAQLAAIVVNATTPSSSSNTHNNFGYQIVAA-AHVTNDLANLNLVDSYNGEESVTVDN
               GALDCYNRMNF++QGRHPP+QLAA+ VN+     S    NNF         H+TN+LANLNL ++YNGEE+VTV+N
Subjt:  -------GALDCYNRMNFAFQGRHPPAQLAAIVVNATTPSSSSNTHNNFGYQIVAA-AHVTNDLANLNLVDSYNGEESVTVDN

XP_016902697.1 PREDICTED: uncharacterized protein LOC107991825 [Cucumis melo]3.9e-1237.23Show/hide
Query:  KGAQFPNSGNFNNKSSGNRGRGNRGNN-GDGNFSKGSGGGF---PQNAPPHFNNGPHGPVDFIQLANFL--------ILVAAIIPPISLEVVACTG----
        +G +F ++GN N  SS N    NRG N   G+   GS   F   P +  P++NN  HGP  F+  +NF         I+ +++    S      +G    
Subjt:  KGAQFPNSGNFNNKSSGNRGRGNRGNN-GDGNFSKGSGGGF---PQNAPPHFNNGPHGPVDFIQLANFL--------ILVAAIIPPISLEVVACTG----

Query:  ------------ALDCYNRMNFAFQGRHPPAQLAAIVVNATTPSSSSNTHNNFGYQIVAA-AHVTNDLANLNLVDSYNGEESVTVDNG
                    ALDCYNRMNF++QG+HPP+QL A+ +N+          NNF         H+TN+LANLNL ++YNGEE+VTV NG
Subjt:  ------------ALDCYNRMNFAFQGRHPPAQLAAIVVNATTPSSSSNTHNNFGYQIVAA-AHVTNDLANLNLVDSYNGEESVTVDNG

TrEMBL top hitse value%identityAlignment
A0A1S4E394 uncharacterized protein LOC1079918251.9e-1237.23Show/hide
Query:  KGAQFPNSGNFNNKSSGNRGRGNRGNN-GDGNFSKGSGGGF---PQNAPPHFNNGPHGPVDFIQLANFL--------ILVAAIIPPISLEVVACTG----
        +G +F ++GN N  SS N    NRG N   G+   GS   F   P +  P++NN  HGP  F+  +NF         I+ +++    S      +G    
Subjt:  KGAQFPNSGNFNNKSSGNRGRGNRGNN-GDGNFSKGSGGGF---PQNAPPHFNNGPHGPVDFIQLANFL--------ILVAAIIPPISLEVVACTG----

Query:  ------------ALDCYNRMNFAFQGRHPPAQLAAIVVNATTPSSSSNTHNNFGYQIVAA-AHVTNDLANLNLVDSYNGEESVTVDNG
                    ALDCYNRMNF++QG+HPP+QL A+ +N+          NNF         H+TN+LANLNL ++YNGEE+VTV NG
Subjt:  ------------ALDCYNRMNFAFQGRHPPAQLAAIVVNATTPSSSSNTHNNFGYQIVAA-AHVTNDLANLNLVDSYNGEESVTVDNG

A0A438GZ04 Retrovirus-related Pol polyprotein from transposon TNT 1-943.4e-0952Show/hide
Query:  ALDCYNRMNFAFQGRHPPAQLAAIVVNATTPSSSSNTHNNFGYQIVAAAHVTNDLANLNLVDSYNGEESVTVDNG
        ALDCYNRMN+AFQGRHPP +LAA+V  A T  +  N H  +     A  HVT+D ANL +   Y G ++V V NG
Subjt:  ALDCYNRMNFAFQGRHPPAQLAAIVVNATTPSSSSNTHNNFGYQIVAAAHVTNDLANLNLVDSYNGEESVTVDNG

A0A5A7U7J4 Putative mitochondrial protein9.4e-1238.25Show/hide
Query:  KGAQFPNSGNFNNKSSGNRGRGNRGNN-GDGNFSKGSGGGF---PQNAPPHFNNGPH--GPVDFIQL----ANFLILVAAIIPPISLEV-------VACT
        +G +F ++GN N  SS N    NRG N   G+   GS   F   P +  P++NN      P  F  +       +    +  P    E        + C 
Subjt:  KGAQFPNSGNFNNKSSGNRGRGNRGNN-GDGNFSKGSGGGF---PQNAPPHFNNGPH--GPVDFIQL----ANFLILVAAIIPPISLEV-------VACT

Query:  -------GALDCYNRMNFAFQGRHPPAQLAAIVVNATTPSSSSNTHNNFGYQIVAA-AHVTNDLANLNLVDSYNGEESVTVDN
               GALDCYNRMNF++QGRHPP+QLAA+ VN+     S    NNF         H+TN+LANLNL ++YNGEE+VTV+N
Subjt:  -------GALDCYNRMNFAFQGRHPPAQLAAIVVNATTPSSSSNTHNNFGYQIVAA-AHVTNDLANLNLVDSYNGEESVTVDN

A0A5A7VGG0 Retrotransposon protein5.0e-1339.49Show/hide
Query:  KGAQFPNSGN--FNNK-SSGNRG----RGNRGNNGDGNFSKGSGGGFPQNAPPHFNNGPHGPVDFIQLANFLIL---VAAII-------PPISLEV----
        +G +F ++GN  FN+  +S NRG     G+RG   + NF     G  P +  P++NN  HGP  F+  ++F  +      II       P   LE     
Subjt:  KGAQFPNSGN--FNNK-SSGNRG----RGNRGNNGDGNFSKGSGGGFPQNAPPHFNNGPHGPVDFIQLANFLIL---VAAII-------PPISLEV----

Query:  ---VACT-------GALDCYNRMNFAFQGRHPPAQLAAIVVNATTPSSSSNTHNNF-----GYQIVAAAHVTNDLANLNLVDSYNGEESVTVDNG
           + C        GALDCYN MNF++Q RH P+QLAA+ VN+     SS   NNF     GY +    H+TN+LANLNL ++YNGEE+VTV NG
Subjt:  ---VACT-------GALDCYNRMNFAFQGRHPPAQLAAIVVNATTPSSSSNTHNNF-----GYQIVAAAHVTNDLANLNLVDSYNGEESVTVDNG

A0A5D3C579 Putative mitochondrial protein9.4e-1238.25Show/hide
Query:  KGAQFPNSGNFNNKSSGNRGRGNRGNN-GDGNFSKGSGGGF---PQNAPPHFNNGPH--GPVDFIQL----ANFLILVAAIIPPISLEV-------VACT
        +G +F ++GN N  SS N    NRG N   G+   GS   F   P +  P++NN      P  F  +       +    +  P    E        + C 
Subjt:  KGAQFPNSGNFNNKSSGNRGRGNRGNN-GDGNFSKGSGGGF---PQNAPPHFNNGPH--GPVDFIQL----ANFLILVAAIIPPISLEV-------VACT

Query:  -------GALDCYNRMNFAFQGRHPPAQLAAIVVNATTPSSSSNTHNNFGYQIVAA-AHVTNDLANLNLVDSYNGEESVTVDN
               GALDCYNRMNF++QGRHPP+QLAA+ VN+     S    NNF         H+TN+LANLNL ++YNGEE+VTV+N
Subjt:  -------GALDCYNRMNFAFQGRHPPAQLAAIVVNATTPSSSSNTHNNFGYQIVAA-AHVTNDLANLNLVDSYNGEESVTVDN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTATCTATCAAGGGCGCTCAATTTCCTAATTCTGGAAACTTCAATAATAAAAGCAGTGGCAATCGTGGCAGAGGCAATCGTGGCAATAATGGTGACGGAAATTTTAG
CAAAGGTAGTGGTGGTGGCTTTCCACAAAATGCTCCTCCTCACTTCAACAATGGTCCTCATGGACCTGTGGATTTTATTCAACTGGCCAACTTTCTAATTTTGGTCGCAG
CAATAATTCCTCCAATATCTCTGGAGGTGGTCGCATGTACTGGGGCACTCGATTGCTACAACCGAATGAACTTTGCATTTCAGGGTCGTCACCCTCCCGCTCAACTTGCG
GCCATAGTGGTAAATGCAACGACCCCTTCTTCATCCTCTAATACTCACAATAATTTTGGTTATCAAATAGTGGCTGCAGCACATGTGACCAATGATTTAGCCAATTTGAA
TCTAGTTGATTCTTACAATGGAGAGGAATCCGTCACAGTCGACAATGGATAA
mRNA sequenceShow/hide mRNA sequence
ATGGTATCTATCAAGGGCGCTCAATTTCCTAATTCTGGAAACTTCAATAATAAAAGCAGTGGCAATCGTGGCAGAGGCAATCGTGGCAATAATGGTGACGGAAATTTTAG
CAAAGGTAGTGGTGGTGGCTTTCCACAAAATGCTCCTCCTCACTTCAACAATGGTCCTCATGGACCTGTGGATTTTATTCAACTGGCCAACTTTCTAATTTTGGTCGCAG
CAATAATTCCTCCAATATCTCTGGAGGTGGTCGCATGTACTGGGGCACTCGATTGCTACAACCGAATGAACTTTGCATTTCAGGGTCGTCACCCTCCCGCTCAACTTGCG
GCCATAGTGGTAAATGCAACGACCCCTTCTTCATCCTCTAATACTCACAATAATTTTGGTTATCAAATAGTGGCTGCAGCACATGTGACCAATGATTTAGCCAATTTGAA
TCTAGTTGATTCTTACAATGGAGAGGAATCCGTCACAGTCGACAATGGATAA
Protein sequenceShow/hide protein sequence
MVSIKGAQFPNSGNFNNKSSGNRGRGNRGNNGDGNFSKGSGGGFPQNAPPHFNNGPHGPVDFIQLANFLILVAAIIPPISLEVVACTGALDCYNRMNFAFQGRHPPAQLA
AIVVNATTPSSSSNTHNNFGYQIVAAAHVTNDLANLNLVDSYNGEESVTVDNG