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MS026158 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS026158
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Genome locationscaffold123_2:254150..255768
RNA-Seq ExpressionMS026158
SyntenyMS026158
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039244.1 putative UPF0481 protein [Cucumis melo var. makuwa]3.5e-1329.9Show/hide
Query:  MDELKHLEIKIRSCFDNFLVVGSEALARIMLIDGLFSIQMLAISTDEKDELRSARPDLSLFSISF-----------------------------------
        + +LK L+IKIRSCFDNFL +GSEALA IMLIDGLF IQ+L IS +EKDE R   PDL L    F                                   
Subjt:  MDELKHLEIKIRSCFDNFLVVGSEALARIMLIDGLFSIQMLAISTDEKDELRSARPDLSLFSISF-----------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -----QLSEAAGLLQSLFGLLGRVGSSSSSSSEDMDTPLLIPSAPELKRVRAGTE-----------------KGVLRSQRIAINLFLEVVF
             QLSEAAGL+Q+LFGLLGR GSSSSS+  ++++PLLIPSA EL+RV    E                 K  L    I IN F EVVF
Subjt:  -----QLSEAAGLLQSLFGLLGRVGSSSSSSSEDMDTPLLIPSAPELKRVRAGTE-----------------KGVLRSQRIAINLFLEVVF

XP_008459652.1 PREDICTED: putative UPF0481 protein At3g02645 [Cucumis melo]3.5e-1329.9Show/hide
Query:  MDELKHLEIKIRSCFDNFLVVGSEALARIMLIDGLFSIQMLAISTDEKDELRSARPDLSLFSISF-----------------------------------
        + +LK L+IKIRSCFDNFL +GSEALA IMLIDGLF IQ+L IS +EKDE R   PDL L    F                                   
Subjt:  MDELKHLEIKIRSCFDNFLVVGSEALARIMLIDGLFSIQMLAISTDEKDELRSARPDLSLFSISF-----------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -----QLSEAAGLLQSLFGLLGRVGSSSSSSSEDMDTPLLIPSAPELKRVRAGTE-----------------KGVLRSQRIAINLFLEVVF
             QLSEAAGL+Q+LFGLLGR GSSSSS+  ++++PLLIPSA EL+RV    E                 K  L    I IN F EVVF
Subjt:  -----QLSEAAGLLQSLFGLLGRVGSSSSSSSEDMDTPLLIPSAPELKRVRAGTE-----------------KGVLRSQRIAINLFLEVVF

XP_022156838.1 putative UPF0481 protein At3g02645 isoform X1 [Momordica charantia]5.2e-2537.24Show/hide
Query:  MDELKHLEIKIRSCFDNFLVVGSEALARIMLIDGLFSIQMLAISTDEKDELRSARPDL------------------------------------------
        MDELKHLEIKIRSCFD+FL +GSEALARIMLIDGLF IQ+L ISTDEKDELRSARPDL                                          
Subjt:  MDELKHLEIKIRSCFDNFLVVGSEALARIMLIDGLFSIQMLAISTDEKDELRSARPDL------------------------------------------

Query:  -------------------------------------------------------------------------------SLFSISF--------------
                                                                                       +LF  SF              
Subjt:  -------------------------------------------------------------------------------SLFSISF--------------

Query:  ----QLSEAAGLLQSLFGLLGRVGSSSSSSSEDMDTPLLIPSAPELKRVRA-----------------GTEKGVLRSQRIAINLFLEVVF
            QLSEAAGLLQSLFGLLGRVGSSSSSS EDMD+P LIPSA ELKRVR                   ++K  L    +AIN+F EVVF
Subjt:  ----QLSEAAGLLQSLFGLLGRVGSSSSSSSEDMDTPLLIPSAPELKRVRA-----------------GTEKGVLRSQRIAINLFLEVVF

XP_022156839.1 putative UPF0481 protein At3g02645 isoform X2 [Momordica charantia]5.2e-2537.24Show/hide
Query:  MDELKHLEIKIRSCFDNFLVVGSEALARIMLIDGLFSIQMLAISTDEKDELRSARPDL------------------------------------------
        MDELKHLEIKIRSCFD+FL +GSEALARIMLIDGLF IQ+L ISTDEKDELRSARPDL                                          
Subjt:  MDELKHLEIKIRSCFDNFLVVGSEALARIMLIDGLFSIQMLAISTDEKDELRSARPDL------------------------------------------

Query:  -------------------------------------------------------------------------------SLFSISF--------------
                                                                                       +LF  SF              
Subjt:  -------------------------------------------------------------------------------SLFSISF--------------

Query:  ----QLSEAAGLLQSLFGLLGRVGSSSSSSSEDMDTPLLIPSAPELKRVRA-----------------GTEKGVLRSQRIAINLFLEVVF
            QLSEAAGLLQSLFGLLGRVGSSSSSS EDMD+P LIPSA ELKRVR                   ++K  L    +AIN+F EVVF
Subjt:  ----QLSEAAGLLQSLFGLLGRVGSSSSSSSEDMDTPLLIPSAPELKRVRA-----------------GTEKGVLRSQRIAINLFLEVVF

XP_022156840.1 putative UPF0481 protein At3g02645 isoform X3 [Momordica charantia]5.2e-2537.24Show/hide
Query:  MDELKHLEIKIRSCFDNFLVVGSEALARIMLIDGLFSIQMLAISTDEKDELRSARPDL------------------------------------------
        MDELKHLEIKIRSCFD+FL +GSEALARIMLIDGLF IQ+L ISTDEKDELRSARPDL                                          
Subjt:  MDELKHLEIKIRSCFDNFLVVGSEALARIMLIDGLFSIQMLAISTDEKDELRSARPDL------------------------------------------

Query:  -------------------------------------------------------------------------------SLFSISF--------------
                                                                                       +LF  SF              
Subjt:  -------------------------------------------------------------------------------SLFSISF--------------

Query:  ----QLSEAAGLLQSLFGLLGRVGSSSSSSSEDMDTPLLIPSAPELKRVRA-----------------GTEKGVLRSQRIAINLFLEVVF
            QLSEAAGLLQSLFGLLGRVGSSSSSS EDMD+P LIPSA ELKRVR                   ++K  L    +AIN+F EVVF
Subjt:  ----QLSEAAGLLQSLFGLLGRVGSSSSSSSEDMDTPLLIPSAPELKRVRA-----------------GTEKGVLRSQRIAINLFLEVVF

TrEMBL top hitse value%identityAlignment
A0A1S3CB64 putative UPF0481 protein At3g026451.7e-1329.9Show/hide
Query:  MDELKHLEIKIRSCFDNFLVVGSEALARIMLIDGLFSIQMLAISTDEKDELRSARPDLSLFSISF-----------------------------------
        + +LK L+IKIRSCFDNFL +GSEALA IMLIDGLF IQ+L IS +EKDE R   PDL L    F                                   
Subjt:  MDELKHLEIKIRSCFDNFLVVGSEALARIMLIDGLFSIQMLAISTDEKDELRSARPDLSLFSISF-----------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -----QLSEAAGLLQSLFGLLGRVGSSSSSSSEDMDTPLLIPSAPELKRVRAGTE-----------------KGVLRSQRIAINLFLEVVF
             QLSEAAGL+Q+LFGLLGR GSSSSS+  ++++PLLIPSA EL+RV    E                 K  L    I IN F EVVF
Subjt:  -----QLSEAAGLLQSLFGLLGRVGSSSSSSSEDMDTPLLIPSAPELKRVRAGTE-----------------KGVLRSQRIAINLFLEVVF

A0A5A7T6Y5 Putative UPF0481 protein1.7e-1329.9Show/hide
Query:  MDELKHLEIKIRSCFDNFLVVGSEALARIMLIDGLFSIQMLAISTDEKDELRSARPDLSLFSISF-----------------------------------
        + +LK L+IKIRSCFDNFL +GSEALA IMLIDGLF IQ+L IS +EKDE R   PDL L    F                                   
Subjt:  MDELKHLEIKIRSCFDNFLVVGSEALARIMLIDGLFSIQMLAISTDEKDELRSARPDLSLFSISF-----------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -----QLSEAAGLLQSLFGLLGRVGSSSSSSSEDMDTPLLIPSAPELKRVRAGTE-----------------KGVLRSQRIAINLFLEVVF
             QLSEAAGL+Q+LFGLLGR GSSSSS+  ++++PLLIPSA EL+RV    E                 K  L    I IN F EVVF
Subjt:  -----QLSEAAGLLQSLFGLLGRVGSSSSSSSEDMDTPLLIPSAPELKRVRAGTE-----------------KGVLRSQRIAINLFLEVVF

A0A6J1DRG6 putative UPF0481 protein At3g02645 isoform X32.5e-2537.24Show/hide
Query:  MDELKHLEIKIRSCFDNFLVVGSEALARIMLIDGLFSIQMLAISTDEKDELRSARPDL------------------------------------------
        MDELKHLEIKIRSCFD+FL +GSEALARIMLIDGLF IQ+L ISTDEKDELRSARPDL                                          
Subjt:  MDELKHLEIKIRSCFDNFLVVGSEALARIMLIDGLFSIQMLAISTDEKDELRSARPDL------------------------------------------

Query:  -------------------------------------------------------------------------------SLFSISF--------------
                                                                                       +LF  SF              
Subjt:  -------------------------------------------------------------------------------SLFSISF--------------

Query:  ----QLSEAAGLLQSLFGLLGRVGSSSSSSSEDMDTPLLIPSAPELKRVRA-----------------GTEKGVLRSQRIAINLFLEVVF
            QLSEAAGLLQSLFGLLGRVGSSSSSS EDMD+P LIPSA ELKRVR                   ++K  L    +AIN+F EVVF
Subjt:  ----QLSEAAGLLQSLFGLLGRVGSSSSSSSEDMDTPLLIPSAPELKRVRA-----------------GTEKGVLRSQRIAINLFLEVVF

A0A6J1DRQ0 putative UPF0481 protein At3g02645 isoform X12.5e-2537.24Show/hide
Query:  MDELKHLEIKIRSCFDNFLVVGSEALARIMLIDGLFSIQMLAISTDEKDELRSARPDL------------------------------------------
        MDELKHLEIKIRSCFD+FL +GSEALARIMLIDGLF IQ+L ISTDEKDELRSARPDL                                          
Subjt:  MDELKHLEIKIRSCFDNFLVVGSEALARIMLIDGLFSIQMLAISTDEKDELRSARPDL------------------------------------------

Query:  -------------------------------------------------------------------------------SLFSISF--------------
                                                                                       +LF  SF              
Subjt:  -------------------------------------------------------------------------------SLFSISF--------------

Query:  ----QLSEAAGLLQSLFGLLGRVGSSSSSSSEDMDTPLLIPSAPELKRVRA-----------------GTEKGVLRSQRIAINLFLEVVF
            QLSEAAGLLQSLFGLLGRVGSSSSSS EDMD+P LIPSA ELKRVR                   ++K  L    +AIN+F EVVF
Subjt:  ----QLSEAAGLLQSLFGLLGRVGSSSSSSSEDMDTPLLIPSAPELKRVRA-----------------GTEKGVLRSQRIAINLFLEVVF

A0A6J1DUS9 putative UPF0481 protein At3g02645 isoform X22.5e-2537.24Show/hide
Query:  MDELKHLEIKIRSCFDNFLVVGSEALARIMLIDGLFSIQMLAISTDEKDELRSARPDL------------------------------------------
        MDELKHLEIKIRSCFD+FL +GSEALARIMLIDGLF IQ+L ISTDEKDELRSARPDL                                          
Subjt:  MDELKHLEIKIRSCFDNFLVVGSEALARIMLIDGLFSIQMLAISTDEKDELRSARPDL------------------------------------------

Query:  -------------------------------------------------------------------------------SLFSISF--------------
                                                                                       +LF  SF              
Subjt:  -------------------------------------------------------------------------------SLFSISF--------------

Query:  ----QLSEAAGLLQSLFGLLGRVGSSSSSSSEDMDTPLLIPSAPELKRVRA-----------------GTEKGVLRSQRIAINLFLEVVF
            QLSEAAGLLQSLFGLLGRVGSSSSSS EDMD+P LIPSA ELKRVR                   ++K  L    +AIN+F EVVF
Subjt:  ----QLSEAAGLLQSLFGLLGRVGSSSSSSSEDMDTPLLIPSAPELKRVRA-----------------GTEKGVLRSQRIAINLFLEVVF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGAACTCAAGCACTTAGAGATCAAAATCCGATCTTGTTTCGACAATTTTCTCGTTGTCGGGTCCGAGGCCTTGGCAAGAATCATGCTCATAGATGGGTTGTTCTC
GATTCAGATGCTGGCCATTTCCACCGATGAAAAAGATGAGCTTAGAAGTGCTAGGCCTGATCTGTCTCTCTTCTCCATTTCCTTTCAGCTGAGTGAAGCTGCCGGGTTAC
TTCAAAGCTTGTTTGGTTTGCTTGGGAGAGTCGGGTCGTCGTCTTCTTCCTCGAGTGAGGACATGGACACCCCGCTGTTGATCCCGTCAGCTCCGGAACTTAAAAGGGTT
CGAGCAGGAACCGAAAAAGGTGTCTTGAGATCCCAGAGGATCGCCATTAATCTCTTCTTGGAAGTAGTTTTTGAGAGGAATCCAATATTGAAGGTGATTTTTCTTATTCT
TGTGATTTTGTTCATTGTTGTGGTTGCTCTCGAGTTTTGCATGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATGAACTCAAGCACTTAGAGATCAAAATCCGATCTTGTTTCGACAATTTTCTCGTTGTCGGGTCCGAGGCCTTGGCAAGAATCATGCTCATAGATGGGTTGTTCTC
GATTCAGATGCTGGCCATTTCCACCGATGAAAAAGATGAGCTTAGAAGTGCTAGGCCTGATCTGTCTCTCTTCTCCATTTCCTTTCAGCTGAGTGAAGCTGCCGGGTTAC
TTCAAAGCTTGTTTGGTTTGCTTGGGAGAGTCGGGTCGTCGTCTTCTTCCTCGAGTGAGGACATGGACACCCCGCTGTTGATCCCGTCAGCTCCGGAACTTAAAAGGGTT
CGAGCAGGAACCGAAAAAGGTGTCTTGAGATCCCAGAGGATCGCCATTAATCTCTTCTTGGAAGTAGTTTTTGAGAGGAATCCAATATTGAAGGTGATTTTTCTTATTCT
TGTGATTTTGTTCATTGTTGTGGTTGCTCTCGAGTTTTGCATGTGA
Protein sequenceShow/hide protein sequence
MDELKHLEIKIRSCFDNFLVVGSEALARIMLIDGLFSIQMLAISTDEKDELRSARPDLSLFSISFQLSEAAGLLQSLFGLLGRVGSSSSSSSEDMDTPLLIPSAPELKRV
RAGTEKGVLRSQRIAINLFLEVVFERNPILKVIFLILVILFIVVVALEFCM