CuGenDBv2

Gene ID	MS026219
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	SWIB domain-containing protein
Genome location	scaffold797:312932..314766
RNA-Seq Expression	MS026219
Synteny	MS026219
Gene Ontology terms	GO:0005634 - nucleus (cellular component)
InterPro domains	IPR003121 - SWIB/MDM2 domain IPR019835 - SWIB domain IPR036885 - SWIB/MDM2 domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6571933.1 hypothetical protein SDJN03_28661, partial [Cucurbita argyrosperma subsp. sororia]

1.8e-52

81.16

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Query:  MAFVSTFFSGEPALLVARASA--SSLKHAPQLPPANLRFVRSVTFATASDQATASRRKPRGIMKPRSISPEMQALVGVPEISRTQALKVIWTHIKEHNLQ
        MAFVSTF SGEP+LLVARASA  SS+KH  QLP  NLRF R++TFA+AS+Q TAS R+PRGIMKPR ISPEMQALVG PEISRT+ALKVIWTHIKEHNLQ
Subjt:  MAFVSTFFSGEPALLVARASA--SSLKHAPQLPPANLRFVRSVTFATASDQATASRRKPRGIMKPRSISPEMQALVGVPEISRTQALKVIWTHIKEHNLQ

Query:  RPDNKKIIVCDEKLKKIFGGKDEVGFLDIAGLISPHFL
        +P +KKII+CDEKLKKIFGGKDEVGFL+IAGLIS HFL
Subjt:  RPDNKKIIVCDEKLKKIFGGKDEVGFLDIAGLISPHFL

XP_022148689.1 uncharacterized protein LOC111017291 [Momordica charantia]

1.9e-86

99.42

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Query:  MDFKARSEFRTSRSRSHRFCTFALSVRVTSPQSLAMAFVSTFFSGEPALLVARASASSLKHAPQLPPANLRFVRSVTFATASDQATASRRKPRGIMKPRS
        MDFKARSEFRTSRSRSHRFCTFALSVRVTSPQSLAMAFVSTFFSGEPALLVARASASSLKHAPQLPPANLRFVR VTFATASDQATASRRKPRGIMKPRS
Subjt:  MDFKARSEFRTSRSRSHRFCTFALSVRVTSPQSLAMAFVSTFFSGEPALLVARASASSLKHAPQLPPANLRFVRSVTFATASDQATASRRKPRGIMKPRS

Query:  ISPEMQALVGVPEISRTQALKVIWTHIKEHNLQRPDNKKIIVCDEKLKKIFGGKDEVGFLDIAGLISPHFL
        ISPEMQALVGVPEISRTQALKVIWTHIKEHNLQRPDNKKIIVCDEKLKKIFGGKDEVGFLDIAGLISPHFL
Subjt:  ISPEMQALVGVPEISRTQALKVIWTHIKEHNLQRPDNKKIIVCDEKLKKIFGGKDEVGFLDIAGLISPHFL

XP_022952608.1 uncharacterized protein LOC111455244 [Cucurbita moschata]

1.1e-52

81.16

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Query:  MAFVSTFFSGEPALLVARASA--SSLKHAPQLPPANLRFVRSVTFATASDQATASRRKPRGIMKPRSISPEMQALVGVPEISRTQALKVIWTHIKEHNLQ
        MAFVSTF SGEP+LLVARASA  SS+KH  QLP  NLRF R++TFA+AS+Q TAS R+PRGIMKPR ISPEMQALVG PEISRT+ALKVIWTHIKEHNLQ
Subjt:  MAFVSTFFSGEPALLVARASA--SSLKHAPQLPPANLRFVRSVTFATASDQATASRRKPRGIMKPRSISPEMQALVGVPEISRTQALKVIWTHIKEHNLQ

Query:  RPDNKKIIVCDEKLKKIFGGKDEVGFLDIAGLISPHFL
        +P +KKII+CDEKLKKIFGGKDEVGFL+IAGLIS HFL
Subjt:  RPDNKKIIVCDEKLKKIFGGKDEVGFLDIAGLISPHFL

XP_022989003.1 uncharacterized protein LOC111486197 [Cucurbita maxima]

9.1e-52

78.26

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Query:  MAFVSTFFSGEPALLVARASA--SSLKHAPQLPPANLRFVRSVTFATASDQATASRRKPRGIMKPRSISPEMQALVGVPEISRTQALKVIWTHIKEHNLQ
        MAFVSTF SGE +LL  RASA  SS+KH  Q PP+NL F R+VTFA+ S+QATAS+R+PRGIMKP+ ISPEMQALVGVPEISRTQALKVIW HIKEHNLQ
Subjt:  MAFVSTFFSGEPALLVARASA--SSLKHAPQLPPANLRFVRSVTFATASDQATASRRKPRGIMKPRSISPEMQALVGVPEISRTQALKVIWTHIKEHNLQ

Query:  RPDNKKIIVCDEKLKKIFGGKDEVGFLDIAGLISPHFL
        +P +KK+I+CDEKLK IFGGKDEVGFL+IAGLISPHFL
Subjt:  RPDNKKIIVCDEKLKKIFGGKDEVGFLDIAGLISPHFL

XP_023553864.1 uncharacterized protein LOC111811315 [Cucurbita pepo subsp. pepo]

3.7e-53

81.88

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Query:  MAFVSTFFSGEPALLVARASA--SSLKHAPQLPPANLRFVRSVTFATASDQATASRRKPRGIMKPRSISPEMQALVGVPEISRTQALKVIWTHIKEHNLQ
        MAFVSTF SGEP+LLVARASA  SS+KH  QLP  NLRF R++TFA+AS+Q TAS R+PRGIMKPR ISPEMQALVG PEISRTQALKVIWTHIKEHNLQ
Subjt:  MAFVSTFFSGEPALLVARASA--SSLKHAPQLPPANLRFVRSVTFATASDQATASRRKPRGIMKPRSISPEMQALVGVPEISRTQALKVIWTHIKEHNLQ

Query:  RPDNKKIIVCDEKLKKIFGGKDEVGFLDIAGLISPHFL
        +P++KKII+CDEKLKKIFGGKDEVGFL+IAGLIS HFL
Subjt:  RPDNKKIIVCDEKLKKIFGGKDEVGFLDIAGLISPHFL

TrEMBL top hits

e value

%identity

Alignment

A0A6J1D4Q4 uncharacterized protein LOC111017291

9.4e-87

99.42

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Query:  MDFKARSEFRTSRSRSHRFCTFALSVRVTSPQSLAMAFVSTFFSGEPALLVARASASSLKHAPQLPPANLRFVRSVTFATASDQATASRRKPRGIMKPRS
        MDFKARSEFRTSRSRSHRFCTFALSVRVTSPQSLAMAFVSTFFSGEPALLVARASASSLKHAPQLPPANLRFVR VTFATASDQATASRRKPRGIMKPRS
Subjt:  MDFKARSEFRTSRSRSHRFCTFALSVRVTSPQSLAMAFVSTFFSGEPALLVARASASSLKHAPQLPPANLRFVRSVTFATASDQATASRRKPRGIMKPRS

Query:  ISPEMQALVGVPEISRTQALKVIWTHIKEHNLQRPDNKKIIVCDEKLKKIFGGKDEVGFLDIAGLISPHFL
        ISPEMQALVGVPEISRTQALKVIWTHIKEHNLQRPDNKKIIVCDEKLKKIFGGKDEVGFLDIAGLISPHFL
Subjt:  ISPEMQALVGVPEISRTQALKVIWTHIKEHNLQRPDNKKIIVCDEKLKKIFGGKDEVGFLDIAGLISPHFL

A0A6J1EIX1 uncharacterized protein LOC111434699

4.4e-52

78.26

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Query:  MAFVSTFFSGEPALLVARASA--SSLKHAPQLPPANLRFVRSVTFATASDQATASRRKPRGIMKPRSISPEMQALVGVPEISRTQALKVIWTHIKEHNLQ
        MAFVSTF SGE +LL  RASA  SS+KH  Q PP+NL F R+VTFA+ S+QATAS+R+PRGIMKP+ ISPEMQALVGVPEISRTQALKVIW HIKEHNLQ
Subjt:  MAFVSTFFSGEPALLVARASA--SSLKHAPQLPPANLRFVRSVTFATASDQATASRRKPRGIMKPRSISPEMQALVGVPEISRTQALKVIWTHIKEHNLQ

Query:  RPDNKKIIVCDEKLKKIFGGKDEVGFLDIAGLISPHFL
        +P +KK+I+CDEKLK IFGGKDEVGFL+IAGLISPHFL
Subjt:  RPDNKKIIVCDEKLKKIFGGKDEVGFLDIAGLISPHFL

A0A6J1GL33 uncharacterized protein LOC111455244

5.2e-53

81.16

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Query:  MAFVSTFFSGEPALLVARASA--SSLKHAPQLPPANLRFVRSVTFATASDQATASRRKPRGIMKPRSISPEMQALVGVPEISRTQALKVIWTHIKEHNLQ
        MAFVSTF SGEP+LLVARASA  SS+KH  QLP  NLRF R++TFA+AS+Q TAS R+PRGIMKPR ISPEMQALVG PEISRT+ALKVIWTHIKEHNLQ
Subjt:  MAFVSTFFSGEPALLVARASA--SSLKHAPQLPPANLRFVRSVTFATASDQATASRRKPRGIMKPRSISPEMQALVGVPEISRTQALKVIWTHIKEHNLQ

Query:  RPDNKKIIVCDEKLKKIFGGKDEVGFLDIAGLISPHFL
        +P +KKII+CDEKLKKIFGGKDEVGFL+IAGLIS HFL
Subjt:  RPDNKKIIVCDEKLKKIFGGKDEVGFLDIAGLISPHFL

A0A6J1IAA1 uncharacterized protein LOC111471082

1.7e-51

80.43

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Query:  MAFVSTFFSGEPALLVARASA--SSLKHAPQLPPANLRFVRSVTFATASDQATASRRKPRGIMKPRSISPEMQALVGVPEISRTQALKVIWTHIKEHNLQ
        MAFVSTF SGE +LL+ARASA  SS+KH  QLP  NLRF R++TFA+AS+QATAS R+PRGIMKPR ISPEMQALVG PEISRTQALKVIW HIKEHNLQ
Subjt:  MAFVSTFFSGEPALLVARASA--SSLKHAPQLPPANLRFVRSVTFATASDQATASRRKPRGIMKPRSISPEMQALVGVPEISRTQALKVIWTHIKEHNLQ

Query:  RPDNKKIIVCDEKLKKIFGGKDEVGFLDIAGLISPHFL
        +P +KKII+CDEKLKKIFGGKDEVGFL+IAGLIS HFL
Subjt:  RPDNKKIIVCDEKLKKIFGGKDEVGFLDIAGLISPHFL

A0A6J1JNZ3 uncharacterized protein LOC111486197

4.4e-52

78.26

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Query:  MAFVSTFFSGEPALLVARASA--SSLKHAPQLPPANLRFVRSVTFATASDQATASRRKPRGIMKPRSISPEMQALVGVPEISRTQALKVIWTHIKEHNLQ
        MAFVSTF SGE +LL  RASA  SS+KH  Q PP+NL F R+VTFA+ S+QATAS+R+PRGIMKP+ ISPEMQALVGVPEISRTQALKVIW HIKEHNLQ
Subjt:  MAFVSTFFSGEPALLVARASA--SSLKHAPQLPPANLRFVRSVTFATASDQATASRRKPRGIMKPRSISPEMQALVGVPEISRTQALKVIWTHIKEHNLQ

Query:  RPDNKKIIVCDEKLKKIFGGKDEVGFLDIAGLISPHFL
        +P +KK+I+CDEKLK IFGGKDEVGFL+IAGLISPHFL
Subjt:  RPDNKKIIVCDEKLKKIFGGKDEVGFLDIAGLISPHFL

SwissProt top hits

e value

%identity

Alignment

O74503 Upstream activation factor subunit spp27

5.8e-09

43.64

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Query:  KPRSISPEMQALVGVPEISRTQALKVIWTHIKEHNLQRPDNKKIIVCDEKLKKIF
        KP  +SP++   +G+ ++SR Q +K +W +IK H+LQ P++K+ I+CD+KLK +F
Subjt:  KPRSISPEMQALVGVPEISRTQALKVIWTHIKEHNLQRPDNKKIIVCDEKLKKIF

Q05024 Protein TRI1

7.5e-09

48.15

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Query:  ISPEMQALVGVPEISRTQALKVIWTHIKEHNLQRPDNKKIIVCDEKLKKIFGGK
        +S  +Q  +G  E+ RTQ +K+IW +IKEH+LQ P +++ I+CDEK++ IFG K
Subjt:  ISPEMQALVGVPEISRTQALKVIWTHIKEHNLQRPDNKKIIVCDEKLKKIFGGK

Q08747 Upstream activation factor subunit UAF30

2.2e-08

47.17

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Query:  SISPEMQALVGVPEISRTQALKVIWTHIKEHNLQRPDNKKIIVCDEKLKKIFG
        ++S  + +L+G  E++RT+ ++ +W +IK HNLQ P+NKK I+CDEKL+ I G
Subjt:  SISPEMQALVGVPEISRTQALKVIWTHIKEHNLQRPDNKKIIVCDEKLKKIFG

Arabidopsis top hits

e value

%identity

Alignment

AT1G31760.1 SWIB/MDM2 domain superfamily protein

4.1e-18

44.33

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Query:  RSVTFATASDQATASRRKPRGIMKPRSISPEMQALVGVPEISRTQALKVIWTHIKEHNLQRPDNKKIIVCDEKLKKIFGGKDEVGFLDIAGLISPHF
        R++    A+ +A     + +GI K R +S ++ +  G  E++R  ALK +W ++K HNLQ P NKK I CD+KLK IF GKD+VG  +I  L+SPHF
Subjt:  RSVTFATASDQATASRRKPRGIMKPRSISPEMQALVGVPEISRTQALKVIWTHIKEHNLQRPDNKKIIVCDEKLKKIFGGKDEVGFLDIAGLISPHF

AT2G14880.1 SWIB/MDM2 domain superfamily protein

1.4e-34

65.52

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Query:  SSLKHAPQLPPANLRFVRSVTFATASDQATA-SRRKPRGIMKPRSISPEMQALVGVPEISRTQALKVIWTHIKEHNLQRPDNKKIIVCDEKLKKIFGGKD
        SSL+ A   P A LR VR+VT AT S + TA ++R PRGIMKPR +SPEMQ +V +PEI+RTQALK IW +IKEH+LQ P NK+ I+CDEKLKKIF G+D
Subjt:  SSLKHAPQLPPANLRFVRSVTFATASDQATA-SRRKPRGIMKPRSISPEMQALVGVPEISRTQALKVIWTHIKEHNLQRPDNKKIIVCDEKLKKIFGGKD

Query:  EVGFLDIAGLISPHFL
         VGFL+IA LI PHFL
Subjt:  EVGFLDIAGLISPHFL

AT2G35605.1 SWIB/MDM2 domain superfamily protein

9.1e-18

48.89

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Query:  ASDQATASRRKPRGIMKPRSISPEMQALVGVPEISRTQALKVIWTHIKEHNLQRPDNKKIIVCDEKLKKIFGGKDEVGFLDIAGLISPHF
        AS     + R+  GI+K   +S  +   +G  E+SRT A+K IW +IK +NLQ P NK+ I+CDE+LK IF GKD VGFL+I+ L+S HF
Subjt:  ASDQATASRRKPRGIMKPRSISPEMQALVGVPEISRTQALKVIWTHIKEHNLQRPDNKKIIVCDEKLKKIFGGKDEVGFLDIAGLISPHF

AT3G03590.1 SWIB/MDM2 domain superfamily protein

6.3e-19

42.11

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Query:  FSGEPALL--VARASASSLKHAPQLPPANLRFVRSVTFATASDQATASRRKPR--GIMKPRSISPEMQALVGVPEISRTQALKVIWTHIKEHNLQRPDNK
        F G  +LL   +RA++S +       PA     ++     A   + A ++ PR  GI K   +SP +   +G  E SRT A+K IWT+IK H+LQ P +K
Subjt:  FSGEPALL--VARASASSLKHAPQLPPANLRFVRSVTFATASDQATASRRKPR--GIMKPRSISPEMQALVGVPEISRTQALKVIWTHIKEHNLQRPDNK

Query:  KIIVCDEKLKKIFGGKDEVGFLDIAGLISPHFL
        + I CDE LK IF GKD+VGFL+I+ L+SPHF+
Subjt:  KIIVCDEKLKKIFGGKDEVGFLDIAGLISPHFL

AT4G34290.1 SWIB/MDM2 domain superfamily protein

2.6e-33

59.42

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Query:  FVSTFFSGEPA-LLVARASASSLKHAPQLPPANLRFVRSVTFATA--SDQATASR-RKPRGIMKPRSISPEMQALVGVPEISRTQALKVIWTHIKEHNLQ
        F +TF   + A L  +  S SSL+ +P   P NLR VR+VT A A  SD  T ++ R+PRGIMKPR +S  MQ +VGVPEI RTQALK IW +IKEH+LQ
Subjt:  FVSTFFSGEPA-LLVARASASSLKHAPQLPPANLRFVRSVTFATA--SDQATASR-RKPRGIMKPRSISPEMQALVGVPEISRTQALKVIWTHIKEHNLQ

Query:  RPDNKKIIVCDEKLKKIFGGKDEVGFLDIAGLISPHFL
         P NK+ I+CDEKLKKIF GK+ VGFL+IA LI PHFL
Subjt:  RPDNKKIIVCDEKLKKIFGGKDEVGFLDIAGLISPHFL

Sequences

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CDS sequence

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ATGGATTTTAAGGCGCGTTCAGAATTTCGGACTTCTCGTTCTCGGTCGCACCGCTTCTGCACCTTCGCTCTATCCGTTCGTGTTACCAGTCCTCAGTCTCTGGCCATGGC
TTTCGTCTCCACATTTTTCTCCGGCGAACCGGCGCTGCTCGTCGCCAGAGCTTCCGCCTCCTCCCTCAAGCACGCTCCTCAACTCCCTCCGGCTAATTTGCGCTTTGTCC
GCTCCGTGACCTTCGCCACGGCGTCGGACCAAGCCACTGCCTCCCGCCGGAAGCCTCGAGGCATTATGAAGCCCCGGAGCATATCGCCGGAGATGCAAGCGCTCGTCGGC
GTTCCGGAGATTTCCCGTACCCAAGCCCTCAAGGTCATTTGGACTCACATAAAAGAACACAATCTTCAGAGACCCGACAACAAGAAGATCATAGTTTGCGACGAGAAGCT
GAAGAAAATATTCGGAGGGAAAGATGAAGTCGGGTTTTTGGATATTGCAGGGTTAATAAGTCCCCACTTTCTATAA

mRNA sequence

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Protein sequence

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MDFKARSEFRTSRSRSHRFCTFALSVRVTSPQSLAMAFVSTFFSGEPALLVARASASSLKHAPQLPPANLRFVRSVTFATASDQATASRRKPRGIMKPRSISPEMQALVG
VPEISRTQALKVIWTHIKEHNLQRPDNKKIIVCDEKLKKIFGGKDEVGFLDIAGLISPHFL

MS026219 (gene) of Bitter gourd (TR) v1 genome