; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS026220 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS026220
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionclassical arabinogalactan protein 9-like
Genome locationscaffold797:322552..324013
RNA-Seq ExpressionMS026220
SyntenyMS026220
Gene Ontology termsGO:0005886 - plasma membrane (cellular component)
InterPro domainsIPR044981 - Lysine-rich arabinogalactan protein AGP9/17/18


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8645846.1 hypothetical protein Csa_017309 [Cucumis sativus]5.1e-4677.23Show/hide
Query:  MDRQALLFLSLICIAVAGAGAQAPSSPPTATPAPPTTTPPPATPPPVSAPPPATPTPATPPPATPPPATPPPASPPPASPPPATPPPASPPPATPPPASP
        MD +ALL  +LI IA   A AQ+PSSPPTATP+PPTT    +TPPPVS+PPPA    ATPPPA+PPPA+PPPASPPPA+PPPA+PPPASPPPA+PPPASP
Subjt:  MDRQALLFLSLICIAVAGAGAQAPSSPPTATPAPPTTTPPPATPPPVSAPPPATPTPATPPPATPPPATPPPASPPPASPPPATPPPASPPPATPPPASP

Query:  PPATPPPAS-PPPATPPPAPLASPPVAVPAPAPSKKKSK-AAPAPSPLSSPPAPPVGAPGPTGP-ESPTPSQNDNSGAGKVWRKETVVGSMLIGMGYVLM
        PPATPPPAS PPPATPPPAPLASPP AVPAPAPSKKK K AAP+PSP+SSPPAP V APGP GP +SPTPSQNDNSG  KVWRKE++VGS++IGMGYV +
Subjt:  PPATPPPAS-PPPATPPPAPLASPPVAVPAPAPSKKKSK-AAPAPSPLSSPPAPPVGAPGPTGP-ESPTPSQNDNSGAGKVWRKETVVGSMLIGMGYVLM

Query:  ML
        ML
Subjt:  ML

KAG6571935.1 hypothetical protein SDJN03_28663, partial [Cucurbita argyrosperma subsp. sororia]2.7e-5580Show/hide
Query:  MDRQALLFLSLICIAVAGAGAQAPSSPPTATPAPP--TTTPPPATPPPVSAPPPATPTPATPPPATPPPATPPPAS---------------PPPASPPPA
        MD QAL  L+LI IA A AGAQ PSSPPTATPAPP  TTTPPPATPPPVSAPPPATP PATPPPA+PPPATPPPAS               PPPASPPPA
Subjt:  MDRQALLFLSLICIAVAGAGAQAPSSPPTATPAPP--TTTPPPATPPPVSAPPPATPTPATPPPATPPPATPPPAS---------------PPPASPPPA

Query:  TPPPASPPPATPPPASPPPATPPPASPPPATPPPAPLASPPVAVPAPAPSKKKSKAAPAPSPLSSPPAPPVGAPGPTGPESPTPSQNDNSGAGKVWRKET
        TPPPASPPPATPPPASPPPATPPPA+PPPATPPPAPLASPP AVPAPAPSKKK KAAP P+P+SSPP P    PGP GPESPTPSQNDNSG  K WRKET
Subjt:  TPPPASPPPATPPPASPPPATPPPASPPPATPPPAPLASPPVAVPAPAPSKKKSKAAPAPSPLSSPPAPPVGAPGPTGPESPTPSQNDNSGAGKVWRKET

Query:  VVGSMLIGMGYVLMM
        +VGSMLIGMGYVLMM
Subjt:  VVGSMLIGMGYVLMM

XP_004136948.3 classical arabinogalactan protein 9 [Cucumis sativus]5.1e-4677.23Show/hide
Query:  MDRQALLFLSLICIAVAGAGAQAPSSPPTATPAPPTTTPPPATPPPVSAPPPATPTPATPPPATPPPATPPPASPPPASPPPATPPPASPPPATPPPASP
        MD +ALL  +LI IA   A AQ+PSSPPTATP+PPTT    +TPPPVS+PPPA    ATPPPA+PPPA+PPPASPPPA+PPPA+PPPASPPPA+PPPASP
Subjt:  MDRQALLFLSLICIAVAGAGAQAPSSPPTATPAPPTTTPPPATPPPVSAPPPATPTPATPPPATPPPATPPPASPPPASPPPATPPPASPPPATPPPASP

Query:  PPATPPPAS-PPPATPPPAPLASPPVAVPAPAPSKKKSK-AAPAPSPLSSPPAPPVGAPGPTGP-ESPTPSQNDNSGAGKVWRKETVVGSMLIGMGYVLM
        PPATPPPAS PPPATPPPAPLASPP AVPAPAPSKKK K AAP+PSP+SSPPAP V APGP GP +SPTPSQNDNSG  KVWRKE++VGS++IGMGYV +
Subjt:  PPATPPPAS-PPPATPPPAPLASPPVAVPAPAPSKKKSK-AAPAPSPLSSPPAPPVGAPGPTGP-ESPTPSQNDNSGAGKVWRKETVVGSMLIGMGYVLM

Query:  ML
        ML
Subjt:  ML

XP_022952421.1 classical arabinogalactan protein 9-like [Cucurbita moschata]2.8e-5279.81Show/hide
Query:  MDRQALLFLSLICIAVAGAGAQAPSSPPTATPAPPTTT-PPPATPPPVSAPPPAT---------PTPATPPPATPPPATPPPASPPPASPPPATPPPASP
        MD QAL   +LI +A A AGAQ PSSPPTA   P TTT PPPATPPPVSAPPPAT         P PATPPPA+PPPATPPPASPPPASPPPATPPPASP
Subjt:  MDRQALLFLSLICIAVAGAGAQAPSSPPTATPAPPTTT-PPPATPPPVSAPPPAT---------PTPATPPPATPPPATPPPASPPPASPPPATPPPASP

Query:  PPATPPPASPPPATPPPASPPPATPPPAPLASPPVAVPAPAPSKKKSKAAPAPSPLSSPPAPPVGAPGPTGPESPTPSQNDNSGAGKVWRKETVVGSMLI
        PPATPPPASPPPATPPPA+PPPATPPPAPLASPP AVPAPAPSKKK KAAP P+P+SSPP P    PGP GPESPTPSQNDNSG  K WRKET+VGSMLI
Subjt:  PPATPPPASPPPATPPPASPPPATPPPAPLASPPVAVPAPAPSKKKSKAAPAPSPLSSPPAPPVGAPGPTGPESPTPSQNDNSGAGKVWRKETVVGSMLI

Query:  GMGYVLMM
        GMGYVLMM
Subjt:  GMGYVLMM

XP_023553858.1 classical arabinogalactan protein 9-like [Cucurbita pepo subsp. pepo]5.1e-5481.95Show/hide
Query:  MDRQALLFLSLICIAVAGAGAQAPSSPPTATPAPPTTT--PPPATPPPVSAPPPATPTPATPPPATPPPATPPPASPPPASPPPATPPPASPPPATPPPA
        MD QAL   +LI IA A AGAQ PSSPPTAT APPTTT  PPPATPPPVS+PPPATP PA+PPPATPPPA+PPPA+PPPASPPPATPPPASPPPATPPPA
Subjt:  MDRQALLFLSLICIAVAGAGAQAPSSPPTATPAPPTTT--PPPATPPPVSAPPPATPTPATPPPATPPPATPPPASPPPASPPPATPPPASPPPATPPPA

Query:  SPPPATPPPASPPPATPPPA-----PLASPPVAVPAPAPSKKKSKAAPAPSPLSSPPAPPVGAPGPTGPESPTPSQNDNSGAGKVWRKETVVGSMLIGMG
        SPPPATPPPASPPPATPPPA     PLASPP AVPAPAPSKKK KAAP P+P+SSPP P    PGP GPESPTPSQNDNSG  K WRKET+VGSMLIGMG
Subjt:  SPPPATPPPASPPPATPPPA-----PLASPPVAVPAPAPSKKKSKAAPAPSPLSSPPAPPVGAPGPTGPESPTPSQNDNSGAGKVWRKETVVGSMLIGMG

Query:  YVLMM
        YVLMM
Subjt:  YVLMM

TrEMBL top hitse value%identityAlignment
A0A0A0K6D8 Uncharacterized protein2.5e-4677.23Show/hide
Query:  MDRQALLFLSLICIAVAGAGAQAPSSPPTATPAPPTTTPPPATPPPVSAPPPATPTPATPPPATPPPATPPPASPPPASPPPATPPPASPPPATPPPASP
        MD +ALL  +LI IA   A AQ+PSSPPTATP+PPTT    +TPPPVS+PPPA    ATPPPA+PPPA+PPPASPPPA+PPPA+PPPASPPPA+PPPASP
Subjt:  MDRQALLFLSLICIAVAGAGAQAPSSPPTATPAPPTTTPPPATPPPVSAPPPATPTPATPPPATPPPATPPPASPPPASPPPATPPPASPPPATPPPASP

Query:  PPATPPPAS-PPPATPPPAPLASPPVAVPAPAPSKKKSK-AAPAPSPLSSPPAPPVGAPGPTGP-ESPTPSQNDNSGAGKVWRKETVVGSMLIGMGYVLM
        PPATPPPAS PPPATPPPAPLASPP AVPAPAPSKKK K AAP+PSP+SSPPAP V APGP GP +SPTPSQNDNSG  KVWRKE++VGS++IGMGYV +
Subjt:  PPATPPPAS-PPPATPPPAPLASPPVAVPAPAPSKKKSK-AAPAPSPLSSPPAPPVGAPGPTGP-ESPTPSQNDNSGAGKVWRKETVVGSMLIGMGYVLM

Query:  ML
        ML
Subjt:  ML

A0A1S3BZW9 classical arabinogalactan protein 97.1e-4677.34Show/hide
Query:  RQALLFLSLICIAVAGAGAQAPSSPPTATPAPPTTT--PPPATPPPVSAPPP-ATPTP-ATPPPATPPPATPPPASPPPASPPPATPPPASPPPATPPPA
        R  LL  + I IA A AGAQ+PSSPPTATP+PPTT+  PP +TPPPVS+PPP ATP P ATPPPA+PPPA+PPPASPPPA+PPPA+PPPASPPPA+PPPA
Subjt:  RQALLFLSLICIAVAGAGAQAPSSPPTATPAPPTTT--PPPATPPPVSAPPP-ATPTP-ATPPPATPPPATPPPASPPPASPPPATPPPASPPPATPPPA

Query:  SPPPATPPPASPPPATPPPAPLASPPVAVPAPAPSKKKSK-AAPAPSPLSSPPAPPVGAPGPTGP-ESPTPSQNDNSGAGKVWRKETVVGSMLIGMGYVL
        SPPPA+PPPASPPPA PPPAPLASPP AVPAPAPSKKK K AAP P+P+SSPPAP V APGP GP +SPTPSQNDNSG  KVWRKE++VGS++IGMGYV 
Subjt:  SPPPATPPPASPPPATPPPAPLASPPVAVPAPAPSKKKSK-AAPAPSPLSSPPAPPVGAPGPTGP-ESPTPSQNDNSGAGKVWRKETVVGSMLIGMGYVL

Query:  MML
        +ML
Subjt:  MML

A0A2C9VIZ5 Uncharacterized protein2.3e-3665.77Show/hide
Query:  RQALLFLSLICIAVAGAGAQAPSSPPTATPAPPTTT-------------PPPATPPPVSAPPPATPTPATPPPATPPPATPPPASPPPAS----------
        ++A +F+SLICI +AGAGAQ+P +PPT TPAPPTTT             PPPATPPPVS PPPATP PA+PPPATPPPATPPPASPPPAS          
Subjt:  RQALLFLSLICIAVAGAGAQAPSSPPTATPAPPTTT-------------PPPATPPPVSAPPPATPTPATPPPATPPPATPPPASPPPAS----------

Query:  PPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPAPLASPPVAVPAPAPSKKKSKAAPAPSPLS-SPPAPPVGAPGPT-GPESPTPSQNDNSGAGK
        PPPATPPPASPPPATPPPASPPPATPPPA+PPPATPPPAPLA+PP  VPAPAPSKKK K APAP+PL  SPPAPP GAP P+ G  SP P+  D SGA +
Subjt:  PPPATPPPASPPPATPPPASPPPATPPPASPPPATPPPAPLASPPVAVPAPAPSKKKSKAAPAPSPLS-SPPAPPVGAPGPT-GPESPTPSQNDNSGAGK

Query:  VWRKETVVGSMLIGMGYVLMML
        +     + GS++ G    L +L
Subjt:  VWRKETVVGSMLIGMGYVLMML

A0A5A7SJX5 Classical arabinogalactan protein 97.1e-4677.34Show/hide
Query:  RQALLFLSLICIAVAGAGAQAPSSPPTATPAPPTTT--PPPATPPPVSAPPP-ATPTP-ATPPPATPPPATPPPASPPPASPPPATPPPASPPPATPPPA
        R  LL  + I IA A AGAQ+PSSPPTATP+PPTT+  PP +TPPPVS+PPP ATP P ATPPPA+PPPA+PPPASPPPA+PPPA+PPPASPPPA+PPPA
Subjt:  RQALLFLSLICIAVAGAGAQAPSSPPTATPAPPTTT--PPPATPPPVSAPPP-ATPTP-ATPPPATPPPATPPPASPPPASPPPATPPPASPPPATPPPA

Query:  SPPPATPPPASPPPATPPPAPLASPPVAVPAPAPSKKKSK-AAPAPSPLSSPPAPPVGAPGPTGP-ESPTPSQNDNSGAGKVWRKETVVGSMLIGMGYVL
        SPPPA+PPPASPPPA PPPAPLASPP AVPAPAPSKKK K AAP P+P+SSPPAP V APGP GP +SPTPSQNDNSG  KVWRKE++VGS++IGMGYV 
Subjt:  SPPPATPPPASPPPATPPPAPLASPPVAVPAPAPSKKKSK-AAPAPSPLSSPPAPPVGAPGPTGP-ESPTPSQNDNSGAGKVWRKETVVGSMLIGMGYVL

Query:  MML
        +ML
Subjt:  MML

A0A6J1GK65 classical arabinogalactan protein 9-like1.3e-5279.81Show/hide
Query:  MDRQALLFLSLICIAVAGAGAQAPSSPPTATPAPPTTT-PPPATPPPVSAPPPAT---------PTPATPPPATPPPATPPPASPPPASPPPATPPPASP
        MD QAL   +LI +A A AGAQ PSSPPTA   P TTT PPPATPPPVSAPPPAT         P PATPPPA+PPPATPPPASPPPASPPPATPPPASP
Subjt:  MDRQALLFLSLICIAVAGAGAQAPSSPPTATPAPPTTT-PPPATPPPVSAPPPAT---------PTPATPPPATPPPATPPPASPPPASPPPATPPPASP

Query:  PPATPPPASPPPATPPPASPPPATPPPAPLASPPVAVPAPAPSKKKSKAAPAPSPLSSPPAPPVGAPGPTGPESPTPSQNDNSGAGKVWRKETVVGSMLI
        PPATPPPASPPPATPPPA+PPPATPPPAPLASPP AVPAPAPSKKK KAAP P+P+SSPP P    PGP GPESPTPSQNDNSG  K WRKET+VGSMLI
Subjt:  PPATPPPASPPPATPPPASPPPATPPPAPLASPPVAVPAPAPSKKKSKAAPAPSPLSSPPAPPVGAPGPTGPESPTPSQNDNSGAGKVWRKETVVGSMLI

Query:  GMGYVLMM
        GMGYVLMM
Subjt:  GMGYVLMM

SwissProt top hitse value%identityAlignment
Q9C5S0 Classical arabinogalactan protein 95.5e-1962.69Show/hide
Query:  LSLICIA-VAGAGAQAPSSPPTATPAPPT-TTPPP-ATPPPVSAPPPATPTPATPPPAT--PPPATPPP--ASPPPASPPPATPPPASPPPATPPPASPP
        +++ICI  +AG   QAP+SPPTATPAPPT TTPPP ATPPPVSAPPP T    +PPP T  PPPA PPP  +SPPPASPPPATPPP + PP  PP ASPP
Subjt:  LSLICIA-VAGAGAQAPSSPPTATPAPPT-TTPPP-ATPPPVSAPPPATPTPATPPPAT--PPPATPPP--ASPPPASPPPATPPPASPPPATPPPASPP

Query:  PATPPPASPPPATPPPAPLASPPVAVPAPAPSKKKSKAAPAPSPLSSPPAPPVGAPGP-TGPESPTPSQ---NDNSGAGKVWRKETVVGSMLI
        PATPPP     ATPPPAPLASPP  VPAPAP+ K    +P+PSP SSPP P   APGP T   SP PS    ND +GA K+     V GS+L+
Subjt:  PATPPPASPPPATPPPAPLASPPVAVPAPAPSKKKSKAAPAPSPLSSPPAPPVGAPGP-TGPESPTPSQ---NDNSGAGKVWRKETVVGSMLI

Arabidopsis top hitse value%identityAlignment
AT2G14890.1 arabinogalactan protein 93.9e-2062.69Show/hide
Query:  LSLICIA-VAGAGAQAPSSPPTATPAPPT-TTPPP-ATPPPVSAPPPATPTPATPPPAT--PPPATPPP--ASPPPASPPPATPPPASPPPATPPPASPP
        +++ICI  +AG   QAP+SPPTATPAPPT TTPPP ATPPPVSAPPP T    +PPP T  PPPA PPP  +SPPPASPPPATPPP + PP  PP ASPP
Subjt:  LSLICIA-VAGAGAQAPSSPPTATPAPPT-TTPPP-ATPPPVSAPPPATPTPATPPPAT--PPPATPPP--ASPPPASPPPATPPPASPPPATPPPASPP

Query:  PATPPPASPPPATPPPAPLASPPVAVPAPAPSKKKSKAAPAPSPLSSPPAPPVGAPGP-TGPESPTPSQ---NDNSGAGKVWRKETVVGSMLI
        PATPPP     ATPPPAPLASPP  VPAPAP+ K    +P+PSP SSPP P   APGP T   SP PS    ND +GA K+     V GS+L+
Subjt:  PATPPPASPPPATPPPAPLASPPVAVPAPAPSKKKSKAAPAPSPLSSPPAPPVGAPGP-TGPESPTPSQ---NDNSGAGKVWRKETVVGSMLI

AT2G14890.2 arabinogalactan protein 99.6e-1966.08Show/hide
Query:  LSLICIA-VAGAGAQAPSSPPTATPAPPT-TTPPP-ATPPPVSAPPPATPTPATPPPAT--PPPATPPP--ASPPPASPPPATPPPASPPPATPPPASPP
        +++ICI  +AG   QAP+SPPTATPAPPT TTPPP ATPPPVSAPPP T    +PPP T  PPPA PPP  +SPPPASPPPATPPP + PP  PP ASPP
Subjt:  LSLICIA-VAGAGAQAPSSPPTATPAPPT-TTPPP-ATPPPVSAPPPATPTPATPPPAT--PPPATPPP--ASPPPASPPPATPPPASPPPATPPPASPP

Query:  PATPPPASPPPATPPPAPLASPPVAVPAPAPSKKKSKAAPAPSPLSSPPAPPVGAPGP-TGPESPTPSQND
        PATPPP     ATPPPAPLASPP  VPAPAP+ K    +P+PSP SSPP P   APGP T   SP PS  D
Subjt:  PATPPPASPPPATPPPAPLASPPVAVPAPAPSKKKSKAAPAPSPLSSPPAPPVGAPGP-TGPESPTPSQND


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCGTCAGGCTTTGTTGTTTTTGAGTTTGATCTGCATTGCCGTCGCCGGCGCCGGAGCTCAGGCCCCCTCCAGTCCTCCCACCGCCACCCCCGCTCCTCCCACTAC
CACCCCTCCTCCGGCCACCCCTCCCCCTGTTTCAGCTCCCCCTCCGGCGACTCCCACTCCGGCCACTCCTCCTCCGGCTACTCCTCCTCCGGCCACCCCACCACCTGCTT
CTCCTCCACCGGCCAGCCCTCCTCCTGCAACTCCTCCACCGGCTAGTCCTCCACCGGCAACCCCACCTCCGGCGAGTCCTCCTCCGGCGACCCCGCCTCCGGCTAGTCCT
CCACCGGCTACCCCACCACCTGCGCCACTGGCCTCCCCCCCAGTGGCGGTTCCGGCTCCTGCACCCAGCAAGAAGAAGTCCAAGGCGGCTCCGGCTCCGTCGCCACTGTC
GAGCCCACCTGCGCCGCCTGTCGGAGCTCCGGGACCCACCGGACCGGAATCTCCTACCCCATCTCAGAACGACAATAGTGGAGCGGGAAAAGTGTGGAGAAAGGAGACGG
TGGTGGGGAGCATGTTGATTGGAATGGGATATGTTTTGATGATGCTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATCGTCAGGCTTTGTTGTTTTTGAGTTTGATCTGCATTGCCGTCGCCGGCGCCGGAGCTCAGGCCCCCTCCAGTCCTCCCACCGCCACCCCCGCTCCTCCCACTAC
CACCCCTCCTCCGGCCACCCCTCCCCCTGTTTCAGCTCCCCCTCCGGCGACTCCCACTCCGGCCACTCCTCCTCCGGCTACTCCTCCTCCGGCCACCCCACCACCTGCTT
CTCCTCCACCGGCCAGCCCTCCTCCTGCAACTCCTCCACCGGCTAGTCCTCCACCGGCAACCCCACCTCCGGCGAGTCCTCCTCCGGCGACCCCGCCTCCGGCTAGTCCT
CCACCGGCTACCCCACCACCTGCGCCACTGGCCTCCCCCCCAGTGGCGGTTCCGGCTCCTGCACCCAGCAAGAAGAAGTCCAAGGCGGCTCCGGCTCCGTCGCCACTGTC
GAGCCCACCTGCGCCGCCTGTCGGAGCTCCGGGACCCACCGGACCGGAATCTCCTACCCCATCTCAGAACGACAATAGTGGAGCGGGAAAAGTGTGGAGAAAGGAGACGG
TGGTGGGGAGCATGTTGATTGGAATGGGATATGTTTTGATGATGCTTTAG
Protein sequenceShow/hide protein sequence
MDRQALLFLSLICIAVAGAGAQAPSSPPTATPAPPTTTPPPATPPPVSAPPPATPTPATPPPATPPPATPPPASPPPASPPPATPPPASPPPATPPPASPPPATPPPASP
PPATPPPAPLASPPVAVPAPAPSKKKSKAAPAPSPLSSPPAPPVGAPGPTGPESPTPSQNDNSGAGKVWRKETVVGSMLIGMGYVLMML